Online Supplement for Szakasits et al. (2008)

These pages contain supplementary material for the manuscript.

The Transcriptome of Syncytia Induced by the Cyst Nematode Heterodera schachtii in Arabidopsis Roots

Dagmar Szakasits,1 Petra Heinen,1 Krzysztof Wieczorek,1 Julia Hofmann,1 Florian Wagner,2 David P. Kreil,3 Peter Sykacek,3 Florian M. W. Grundler1 Holger Bohlmann,1

  1. Institute of Plant Protection, Department of Applied Plant Sciences and Plant Biotechnology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
  2. RZPD, Germany; present address: ATLAS Biolabs GmbH, Berlin, Germany
  3. WWTF Chair of Bioinformatics, Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Vienna, Austria

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These pages provide a comprehensive archive of supplementary data and results for the above journal manuscript. The tables comprise thousands of pages and are provided so that readers can easily search for particular genes in the list of results.

This page lists content sorted by type and in the context of a short description. To complement this, for easier reference by figure and table number (following the order of appearance in the manuscript text), please use the below links:

Appendix S1: Methods

We provide supplementary documents providing further details on the microarray experiments and data analysis methods employed as well as particulars about the performed quantitative real-time and in situ PCR.

Appendix S2: Archive of data and sample description tables

Appendix S3: Low-level microarray analysis and diagnostic plots

Diagnostic plots are provided of the raw, unnormalized data. These have been used to determine an appropriate normalization method. Subsequent diagnostics verify successful normalization and examine data set characteristics for systematic trends and artefacts.

Analysis results

Last updated 4th March, 2008 – D. Kreil

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