ID expr.6.4.exp_090507.CEL expr.6.4.exp_150607.CEL expr.6.5.exp_090507.CEL expr.6.5.exp_150607.CEL expr.6.7.exp_1_040507.CEL expr.6.7.exp_150607.CEL expr.7.2.exp_1_040507.CEL expr.7.2.exp_150607.CEL expr.6.4.3_exp160807.CEL expr.6.4.4_exp160807.CEL expr.6.5.11_exp160807.CEL expr.6.5.2_exp160807.CEL expr.6.5.6_exp160807.CEL expr.6.5.8_exp160807.CEL expr.6.7.19_exp160807.CEL expr.6.7.20_exp160807.CEL expr.6.7.21_exp160807.CEL expr.6.7.22_exp160807.CEL expr.7.2.1_exp160807.CEL se.expr.6.4.exp_090507.CEL se.expr.6.4.exp_150607.CEL se.expr.6.5.exp_090507.CEL se.expr.6.5.exp_150607.CEL se.expr.6.7.exp_1_040507.CEL se.expr.6.7.exp_150607.CEL se.expr.7.2.exp_1_040507.CEL se.expr.7.2.exp_150607.CEL se.expr.6.4.3_exp160807.CEL se.expr.6.4.4_exp160807.CEL se.expr.6.5.11_exp160807.CEL se.expr.6.5.2_exp160807.CEL se.expr.6.5.6_exp160807.CEL se.expr.6.5.8_exp160807.CEL se.expr.6.7.19_exp160807.CEL se.expr.6.7.20_exp160807.CEL se.expr.6.7.21_exp160807.CEL se.expr.6.7.22_exp160807.CEL se.expr.7.2.1_exp160807.CEL Chr ChrList StrandList From.Min From.Max From.Mean start end strand type Note isChr5 isClean IDlist Short.description Currator.summary Description logFC t P.Value adj.P.Val B A M M.se AT3G16670_at 10.5592155823743 10.5663194161630 2.93150681854914 3.12192027237412 3.20985345791683 3.62953667059365 8.57606225971434 8.59862933945175 7.67007749745681 6.31631910295705 3.97923225148292 10.0217103160498 3.07827138274232 3.68835187027739 9.34211807501798 2.46376205428759 4.12215787619764 3.72948424938252 7.02358307422864 0.384159064341538 0.386027975135638 0.377130827350739 0.375592585059119 0.372940861565905 0.372940861565905 0.378233562229264 0.380939082751446 0.387002380490511 0.378447949821754 0.374305830538303 0.383126345600439 0.379310973539665 0.372940861565905 0.379605380602977 0.380375277751615 0.377296215388253 0.385618678472714 0.37635567815129 3 3 + 5681522 5682038 5681774 5681425 5682337 + gene protein_coding_gene FALSE TRUE AT3G16670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16660.1); similar to Phylloplanin precursor (T-phylloplanin) (GB:Q56S59) -4.1510214466759 -43.9748092279122 1.32308814398461e-13 2.08055610641579e-09 14.5733959594696 12.4273617609641 -4.1510214466759 0.079858871763409 AT3G30720_at 6.9772613746156 7.10099786960797 2.39279582304523 2.26603298179379 2.00885616327064 2.37880092855586 3.12236117938497 3.5304100582992 5.60263104984672 7.1974618662006 2.26041671227633 2.02025710192079 2.34082031592579 2.33268847935289 2.22963782382034 2.34302517458122 2.99946355596859 2.49245392745208 6.08101585571018 0.316530467352288 0.307018572945775 0.275813786382732 0.273287500414197 0.273287500414197 0.276583712879485 0.273386730864242 0.273287500414197 0.300305184767423 0.311657937370532 0.286106776035681 0.281940415312989 0.275745672760992 0.287163157821089 0.283837735685383 0.273287500414197 0.27925352169301 0.278673746650763 0.308710970850319 3 0|3 /|+ 12352085 12352180 12352134.3 12351626 12352205 + gene protein_coding_gene FALSE TRUE AT3G30720.1 unknown protein -3.41874684190873 -33.765805219315 2.29865307923822e-12 3.61417223648626e-08 14.3056356363566 8.05771370248737 -3.41874684190873 0.100124133672810 AT3G46370_at 5.8521054481967 5.42107038547599 1.91726629404478 1.41589241214715 1.42044510283032 1.71940334740554 7.84168937340301 7.23653719677045 7.38025023598448 7.50696807664637 3.74293682073483 3.24601906867432 3.59844913175312 4.14221421283802 3.92943163204712 3.08725687954673 3.85794705030851 3.86003812293951 7.04532723772229 0.226325189084703 0.214414666711775 0.216764945365237 0.219024959883329 0.224227463586694 0.214097193799513 0.227063364120092 0.224542717742454 0.231831902784713 0.217025910540892 0.208570287788836 0.209141378114025 0.220748234554625 0.213921812792618 0.208570287788836 0.210196582873392 0.213115061870667 0.215605296006499 0.218197684308768 3 3 + 17065857 17066462 17066232.091 17062940 17066499 + gene protein_coding_gene FALSE TRUE AT3G46370.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46340.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G46420.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46400.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -4.29870535689185 -33.5728654684769 2.4452079776655e-12 3.8443559824857e-08 14.2983161890038 9.59999376085407 -4.29870535689185 0.163511675421749 AT3G05730_at 10.6756367675512 10.5722561031340 4.45616315723792 4.55960712907676 5.82492340837975 5.97057136186083 9.79758620684767 10.0117945773261 7.21501871446633 8.77886736907171 7.91152549913421 10.6248148678154 7.83964605506799 8.46470762149685 10.4124178563509 4.2642676531655 7.52637277465538 7.01241801103469 9.11876144142028 0.196257732356933 0.19656545468432 0.196870151794635 0.20363090894108 0.198872380414233 0.204995530593925 0.199724851447661 0.196361928331462 0.203011065730499 0.20034692226013 0.194894956336762 0.198132007117549 0.19528938346363 0.199610933596376 0.198406180666602 0.199078928012463 0.208820058606045 0.199509593600014 0.194894956336762 3 3|0 +|/ 1696076 1696467 1696346.7 1695982 1696714 + gene protein_coding_gene FALSE TRUE AT3G05730.1 Encodes a defensin-like (DEFL) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05727.1) -2.71268168277762 -31.2396217813323 5.3147065599136e-12 8.35525018284017e-08 14.1998265382559 15.9225192392565 -2.71268168277762 0.0514780962811783 AT2G21650_at 8.58394661310563 8.75838336891464 3.74536061060993 4.01880298415324 3.47117696585657 3.24578434519067 6.59790095022831 6.77200136517199 4.49653801548407 4.7984313892319 3.94056289815735 4.03230220619654 3.60060531095117 3.09495486507761 3.32310104789528 4.77680799399844 2.78583532394799 3.20010516482321 6.40920603155337 0.284176813674068 0.283114132632110 0.272152583712740 0.267779679871143 0.268190727638008 0.27651040099656 0.278580182284626 0.276877320392836 0.277905678435261 0.273023945093634 0.272967982788103 0.267655025716005 0.269055229615359 0.285639651446897 0.267655025716005 0.267655025716005 0.289616772685116 0.272518060312659 0.272638869253992 2 2 + 9266736 9266987 9266845.182 9266663 9267736 + gene protein_coding_gene FALSE TRUE AT2G21650.1 MEE3 (maternal effect embryo arrest 3); DNA binding / transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G39250.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -2.84910882097235 -30.6920120024413 6.42962529673455e-12 1.01067280039370e-07 14.1737219658054 10.0636743988059 -2.84910882097235 0.074697036797757 AT3G23880_at 6.134290892215 6.35439358294645 1.89019843891709 1.80184300500628 2.95015195700558 2.51606549981527 6.64341157503858 7.20805882327944 5.84857077666394 6.02495474186639 3.08613073779153 4.187995415406 4.13318701569483 4.303115636994 3.44094828183205 5.32306709417577 3.06744862258321 2.97532815876326 7.09325091620445 0.236253354575289 0.235085348514399 0.232399710966792 0.244565594990984 0.236040230111197 0.246287314653639 0.238927255133778 0.230912443718473 0.247184300368015 0.234538412373321 0.238039642433765 0.230912443718473 0.230912443718473 0.230912443718473 0.233651054791604 0.236463631024959 0.242248112688815 0.237356162387284 0.232689636015568 3 3 - 8622096 8622549 8622306.091 8621995 8623169 - gene protein_coding_gene FALSE TRUE AT3G23880.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE90596.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE77917.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -3.4015400921785 -30.1011348530483 7.92616201444178e-12 1.24575488380981e-07 14.1441060846446 9.50575743776963 -3.4015400921785 0.129907405034099 AT1G65390_at 5.07231743493853 5.56311916034476 2.55040598195565 2.51822608006681 2.68847164955729 2.65514634135849 4.89908768181382 4.89581787547089 5.04727329245993 5.87934697040412 3.30715249865768 3.67853849104222 2.75349421007093 3.06359437715441 2.8979892515577 3.86953710038732 2.60344214072179 2.69947943793115 4.57786857508867 0.198184358758019 0.197769211439286 0.18774874833066 0.187850400095914 0.189320053168189 0.190009846181737 0.194096994757410 0.192498833824306 0.197564465560318 0.196418541045551 0.187916238920707 0.188657189495970 0.187448737428758 0.188051496598111 0.187943175482115 0.186378027995112 0.190350367602444 0.191365893454186 0.190406068300028 1 1 + 24296340 24298203 24297316.773 24296141 24298294 + gene protein_coding_gene FALSE TRUE AT1G65390.1|AT1G65390.2 ATPP2-A5; transmembrane receptor similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1); similar to Os01g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042077.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08190.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Galactose-binding like; (InterPro:IPR008979)|similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1); similar to TIR; Disease resistance protein [Medicago truncatula] (GB:ABD28631.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -2.28176626622564 -23.7352154951860 1.01438833429600e-10 1.59370551201244e-06 13.693900425435 7.9939822179006 -2.28176626622564 0.0853149220778714 AT1G66100_at 11.9322649545901 12.1891864579261 8.51425836848633 8.81022244730822 9.10022099036216 8.76317795825268 12.8544687214657 12.9937426316114 13.1418941758578 13.2472172957759 12.6694461712648 13.0707957920504 13.2268889644827 12.8639898001231 12.0258875559937 12.7035204073486 11.6821192901113 12.7464280967167 13.3870310037106 0.0885333221497122 0.0856519230472216 0.106109580453512 0.102718241004893 0.093864031162581 0.104202951655540 0.0883761838239716 0.0862748699228861 0.0932313168276047 0.0873976069949868 0.0873688490499009 0.0856519230472216 0.0864157447019019 0.090899456812524 0.0882960437479943 0.0856519230472216 0.0922677107136773 0.0856519230472216 0.0865344503554723 1 1|0 -|/ 24609552 24610044 24609863.9 24609334 24610200 - gene protein_coding_gene FALSE TRUE AT1G66100.1 thionin, putative Identical to Probable thionin-2.4 precursor [Contains: Probable thionin-2.4; Acidic protein] [Arabidopsis Thaliana] (GB:Q9C8D6); similar to THI2.2 (THIONIN 2.2), toxin receptor binding [Arabidopsis thaliana] (TAIR:AT5G36910.1); similar to thionin (GB:AAC41679.1); contains InterPro domain Thionin; (InterPro:IPR001010) -2.16526269949132 -21.9608195794804 2.32514747926009e-10 3.65094657193419e-06 13.5061703490091 23.5858671503551 -2.16526269949132 0.092644652622384 AT2G27420_at 2.48813016608019 2.53279289464733 2.42721483806561 2.39341362839611 2.15553210409893 2.32644088248070 9.18452491763379 8.97877108589041 4.21579140160073 5.27655045773951 4.03588460163611 4.24162414965832 5.01356245825813 4.73554103205853 4.26598034107336 6.12605209712156 5.22102872431009 4.67924234912918 5.55771067596803 0.312045941015251 0.28506136595475 0.293059000136137 0.297108774309131 0.28507464972094 0.287143854401290 0.326651870495280 0.328219143761893 0.29183919700897 0.299836333449262 0.285506871545031 0.28506136595475 0.28506136595475 0.290100734268016 0.28506136595475 0.303186939233996 0.2990664940286 0.28506136595475 0.298173201631679 2 2 - 11733560 11733941 11733740.727 11733222 11734692 - gene protein_coding_gene FALSE TRUE AT2G27420.1 cysteine proteinase, putative similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G49340.1); similar to cysteine proteinase precursor [Ipomoea batatas] (GB:AAL14199.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -1.84861205604151 -21.5067230800546 2.90494269580088e-10 4.56076003240738e-06 13.4518534726530 8.96412688845751 -1.84861205604151 0.0472923064949465 AT2G04160_at 6.50158535152148 6.99108843657158 3.69290154980456 3.45283354886109 3.71846999495844 3.60329219157941 6.51071367777368 6.18297997729206 5.37986261978269 5.03994663489338 3.12234339575787 4.12299681952346 3.05859837365167 3.11697100339992 4.42195656006551 3.89462227963318 3.49075256459017 3.51785363357235 5.19377951272319 0.237559615322723 0.227984674888713 0.229435354828018 0.221238786917346 0.221269907014135 0.227605713255323 0.224825441687276 0.246693670965596 0.231348968609307 0.224128349283224 0.222075942937763 0.221260898913694 0.237319297214667 0.225882727786617 0.221238786917346 0.224182998990751 0.230416890235110 0.235964082969425 0.228060800335269 2 2 - 1401610 1402294 1401935 1401273 1407742 - gene protein_coding_gene FALSE TRUE AT2G04160.1 AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59810.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max] (GB:AAQ23176.1); similar to putative subtilisin-like proteinase [Oryza sativa (japonica cultivar-group)] (GB:BAD35630.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -2.27049264992382 -21.4857759209432 2.93524755482635e-10 4.60804513632188e-06 13.4492793565793 9.48062879999896 -2.27049264992382 0.111874348601354 AT1G01060_at 8.4178727449154 8.92046092042225 6.08124149006185 6.52050513152252 4.95395964268952 6.06655698903061 10.2443091039108 10.5178596505997 9.84596700501523 10.0367421409878 6.91338681609888 7.47018407755012 7.07797716856698 7.49164993908654 5.48100632388683 8.30991487761654 6.05815741041896 6.3104467916084 10.0789875176801 0.228197838830086 0.228197838830086 0.232465031412987 0.236592351789317 0.228354423051079 0.237798923066655 0.233815938140536 0.238444524910888 0.233271035889296 0.230040135725645 0.230306019139558 0.236615629364676 0.228329989511684 0.233109897165061 0.241176410309473 0.228197838830086 0.245118484162831 0.240982847919909 0.236286408036206 1 1|0 -|/ 34174 34636 34419 33379 37840 - gene protein_coding_gene FALSE TRUE AT1G01060.1|AT1G01060.2|AT1G01060.3|AT1G01060.4 LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor|LHY (LATE ELONGATED HYPOCOTYL); DNA binding|LHY (LATE ELONGATED HYPOCOTYL) myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -3.35885079362972 -20.8616677704246 4.01697154652994e-10 6.3058419337427e-06 13.3696608996595 16.15350703256 -3.35885079362972 0.229468799178338 AT1G59930_at 5.93924971086924 6.0339482242812 3.30105066783612 3.95699471661445 4.40263458706319 3.84261469626542 7.0502940109922 6.34128760967702 5.57420565658844 7.00775428943973 3.24354628561623 2.37453471068504 3.11505291432171 4.29829273975221 2.88166859236379 3.27454466134281 3.61484970102123 2.91490017542489 6.85860214386264 0.582312911610962 0.480452979185415 0.480452979185415 0.480452979185415 0.480452979185415 0.508953429910014 0.480452979185415 0.490364298916732 0.508049320574721 0.529278478665006 0.500375766922311 0.480452979185415 0.480452979185415 0.480452979185415 0.491379095294569 0.480452979185415 0.480452979185415 0.484484365294591 0.492775690477471 1 1 - 22064797 22064828 22064812.333 22064748 22065146 - gene protein_coding_gene FALSE TRUE AT1G59930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59920.1); contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF14) -2.86544243137053 -20.0677573139496 6.06682483084599e-10 9.51945484208044e-06 13.2595979874670 9.95593982088132 -2.86544243137053 0.193909488965696 AT1G55260_at 8.14785788378196 8.43906350882582 3.70564628932188 3.75302808036622 5.37196473414414 4.79146378943074 10.0373477669444 9.94288384112963 8.4823354190885 9.42324143620114 10.0015654424387 10.2269718008407 9.8257837676275 9.48877468294975 9.98824393694043 8.55830289581432 8.22853529525262 9.39879422497156 8.95659764405978 0.206160465555143 0.201478710504177 0.226334125260131 0.229208816241255 0.232659311049981 0.223859554462799 0.202753723314616 0.199273075402836 0.215933230687403 0.203058645379978 0.199273075402836 0.199273075402836 0.199273075402836 0.199273075402836 0.200914738363132 0.199978736756109 0.217986445154871 0.206603092621216 0.204799725087797 1 1|0 +|/ 20618474 20619795 20618897.8 20618416 20620102 + gene protein_coding_gene FALSE TRUE AT1G55260.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid transfer protein-related [Arabidopsis thaliana] (TAIR:AT2G44300.1); similar to Protease inhibitor/seed storage/LTP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94168.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -2.11284959372504 -19.8474951961801 6.82081879542072e-10 1.07011826081356e-05 13.2271724219386 15.9829968228952 -2.11284959372504 0.113868197497863 AT1G64390_at 7.73253395515183 7.74413262111152 2.99910768474332 2.98010205784856 5.34949880473972 5.21992970222513 9.2126263306071 9.35332474908405 8.09739252529257 8.36482413702439 9.81141090247656 10.7624978988076 9.32144863915278 9.36411337993725 10.5437252265792 9.52180384901676 7.81117688592884 9.79704557685312 8.80235600550824 0.191290955963578 0.179278967075559 0.193460067914654 0.187885916684986 0.190233759601853 0.206351867102025 0.176201494762119 0.180840194031523 0.204218195321123 0.187352597792714 0.177156354278619 0.17879652625776 0.182315485867178 0.184103661745857 0.185194532877228 0.177760204401725 0.193007878197679 0.17962752510693 0.186397288982643 1 1|0 +|/ 23917560 23918281 23917857.111 23914782 23918892 + gene protein_coding_gene FALSE TRUE AT1G64390.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT4G11050.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G48930.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G32990.1); similar to cellulase [Fragaria x ananassa] (GB:AAC78298.2); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAB43938.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAC94006.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.58918313968191 -19.0293188075118 1.06568551422267e-09 1.67131459195541e-05 13.0988405866223 15.3429954969151 -1.58918313968191 0.0333236696499155 AT4G18970_at 4.74757763109542 5.37333585646004 1.94951738528426 2.00543884379553 2.05046054521002 2.31769552525087 5.56757616996831 5.71294862488816 8.139140843226 6.84320439303591 7.54110084016462 8.76273832268424 6.76950404383561 6.76223347725487 8.61940492790296 7.76015640386641 3.33768180177448 6.77826194300232 8.45960988381988 0.319803751254908 0.324832773125551 0.346580896292077 0.350203205853156 0.34507496614666 0.336889556601854 0.319803751254908 0.319803751254908 0.324449456407177 0.326293276659434 0.319803751254908 0.320790247471946 0.319803751254908 0.322394908258858 0.319803751254908 0.319803751254908 0.32973063739836 0.326687544967996 0.319803751254908 4 4|0 -|/ 10389327 10390073 10389682.1 10389122 10390928 - gene protein_coding_gene FALSE TRUE AT4G18970.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G45670.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -2.02109065784219 -18.5037878648597 1.43321434590871e-09 2.24713677295026e-05 13.0093068145292 11.1432539527881 -2.02109065784219 0.120797640817692 AT3G56370_at 3.37943482101067 3.42119997320550 2.05375149144540 1.96529762118527 2.07582479832403 2.35623582886750 5.54891422521098 5.73973794826997 4.9158618488325 4.70586592260352 4.87998963527635 5.22921368414138 4.16188606370958 4.35288865539678 5.08332513771442 3.59097894372865 2.73409323537575 4.10728227352436 5.49610565602754 0.241817995525436 0.242138755824483 0.252898723606009 0.251121410139833 0.241744274411129 0.250730870434386 0.243018532979324 0.246925857656500 0.253999048724575 0.241744274411129 0.241744274411129 0.241744274411129 0.243910937169432 0.250044448176994 0.247155279827681 0.243977025234885 0.24409720393317 0.241744274411129 0.243705999478529 3 3 - 20910403 20910948 20910724.818 20910078 20913960 - gene protein_coding_gene FALSE TRUE AT3G56370.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G28040.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01367.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB85306.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26311.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.59068245625742 -17.8537231175773 2.09094134229245e-09 3.27775964817764e-05 12.8900295034964 7.97091709482138 -1.59068245625742 0.0610891430700272 AT1G58270_at 7.17238050997467 7.92985011529575 1.12731209954234 1.72920765702943 2.55196819626722 2.14876271965508 6.9360374526056 6.56894697264001 5.02549423877281 5.37022279945979 5.73096080757714 7.42610855100255 6.04323518099098 4.85987690518691 6.22413184457985 2.85236967764124 3.50983888951992 6.13436326660079 4.83425626235997 0.270336242295430 0.260268998886356 0.280572617371642 0.270083584460548 0.268477849474265 0.265734960088548 0.257253431908772 0.263584826472618 0.268886375697188 0.259297750928279 0.258508035053077 0.257253431908772 0.257253431908772 0.265218582268361 0.271150444004624 0.261865873161721 0.257253431908772 0.274758618314992 0.259410044324170 1 1 - 21616082 21616759 21616406.636 21615781 21617782 - gene protein_coding_gene FALSE TRUE AT1G58270.1 ZW9 ZW9 mRNA, complete cds similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28220.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -2.49576911049113 -17.5843867204243 2.45444914794525e-09 3.84685814957459e-05 12.8376288157885 9.73269241900207 -2.49576911049113 0.192189537472483 AT3G02380_at 7.94654308278798 8.12262878402265 7.54319751554318 7.4136227917672 7.50296722670301 6.93366796836307 11.2690145178106 11.1551268668499 10.6472160723365 10.8594338291035 9.11267906087722 9.5664336977250 9.5897682716981 9.38380734965844 9.05972106303457 10.6374714585680 9.66845503112984 9.03073552255896 11.1455935439996 0.188200502804076 0.177398829993930 0.188986751641391 0.198203349050440 0.187873162722318 0.192720546309932 0.170207528134137 0.173132492091624 0.174106074769255 0.173101389424297 0.175686826981208 0.169603552603930 0.170952425170757 0.173115893101114 0.168243634011985 0.172386970416320 0.173268909467830 0.172716924860434 0.173108959252310 3 3|0 -|/ 487446 488103 487759.556 487243 488700 - gene protein_coding_gene FALSE TRUE AT3G02380.1 COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins Identical to Zinc finger protein CONSTANS-LIKE 2 (COL2) [Arabidopsis Thaliana] (GB:Q96502); similar to CO (CONSTANS), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15840.1); similar to Col-2-like protein [Brassica rapa] (GB:AAR90093.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -1.82645582692363 -17.5725150733764 2.47198211193950e-09 3.87409036583159e-05 12.8352769070209 18.680953634424 -1.82645582692363 0.107359161579249 AT3G26320_at 6.54671179754513 7.33121079491056 3.58807121662682 3.69105977523791 3.93758007647459 3.80747294136297 3.90549331597528 3.90528443530409 5.72169368568482 4.6580871586109 2.73927370871738 2.47333550418849 3.00097477431366 3.30815356352975 3.2492730034652 3.18657408647925 2.87343395435115 2.65413117226816 5.26819316912596 0.279944464355539 0.282262064216513 0.266925701356142 0.263978953727120 0.262262578343983 0.262262578343983 0.262262578343983 0.272558431830376 0.280650266188212 0.280089507510792 0.265700856802401 0.265796373924834 0.269176489758401 0.262262578343983 0.266440368351529 0.262262578343983 0.272023042008512 0.262262578343983 0.283851980895457 3 3 - 9645622 9646091 9645833.636 9645620 9647301 - gene protein_coding_gene FALSE TRUE AT3G26320.1 CYP71B36 (cytochrome P450, family 71, subfamily B, polypeptide 36); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B36 (EC 1.14.-.-) (CYP71B36) [Arabidopsis Thaliana] (GB:Q9LIP4); similar to CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26300.1); similar to CYP71B9 (cytochrome P450, family 71, subfamily B, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G02580.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -1.97323835020064 -16.8926617617844 3.74470510992201e-09 5.86645502520383e-05 12.6943245284873 8.66492807354035 -1.97323835020064 0.138764940529763 AT3G13065_at 6.2334248598471 5.75336384783954 4.14653538795061 3.92279052741855 4.53869056979346 4.49172260901356 5.80247905049314 5.1591400717136 5.82422495251733 6.56804239416283 3.88002022950038 3.3487675383901 3.85935858404962 3.24697322350272 3.23874301483706 3.5103784966155 4.08045065104476 3.32121178717676 5.97843418095147 0.32042407411891 0.316610195342497 0.315476950706239 0.321530669258506 0.318131597063706 0.318465092270596 0.325926845689662 0.314782392108746 0.332345180939720 0.327894296976114 0.314782392108746 0.322992356033149 0.319099959678421 0.314782392108746 0.319949991240688 0.315700553163963 0.314782392108746 0.316255650866029 0.320101777292882 3 3|0 +|/ 4189819 4190584 4190207.444 4187768 4190870 + gene protein_coding_gene FALSE TRUE AT3G13065.1 leucine-rich repeat transmembrane protein kinase, putative similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G78980.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91085.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -2.01249820958345 -16.867631062088 3.80353273424762e-09 5.9582340281989e-05 12.6888905825279 9.8481709237671 -2.01249820958345 0.144437042418171 AT4G36410_at 6.83970822287315 7.05951519856064 3.59929946329606 3.82993079446539 3.58450669394029 3.69883143494286 4.39253379677176 4.32351064447711 3.52978864253372 2.87381549331156 1.83008521755972 2.45555931786275 2.22588129892962 1.69012984581159 2.19044097332614 4.43731924726522 2.81327517105287 1.65201161006040 3.81280060369307 0.237414471953275 0.232940243627714 0.231977132276159 0.235724055387219 0.238529585980192 0.244014107241516 0.239343883436242 0.236187697068428 0.239329492370560 0.235869831937178 0.251276194349202 0.236970628612057 0.241162118635909 0.232640325533634 0.238039212831028 0.232841904680698 0.236073695295635 0.247317724410589 0.232949546214214 4 0|4 /|+ 17202114 17202860 17202471 17201925 17202991 + gene protein_coding_gene FALSE TRUE AT4G36410.1 UBC17 (UBIQUITIN-CONJUGATING ENZYME 17); ubiquitin-protein ligase ubiquitin-conjugating enzyme similar to UBC16 (ubiquitin-conjugating enzyme 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G75440.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89644.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -1.48465264014438 -16.7249091698395 4.15878042097742e-09 6.51306601729274e-05 12.6575597198961 7.57463257203907 -1.48465264014438 0.0597828750108433 AT2G37950_at 4.66788988658004 4.83089428795888 2.31018298051923 2.43075197028865 2.76982738705414 2.22747418427284 3.97764834362073 4.28070500027279 4.32675886879901 5.0227564769544 3.10749311965112 3.72319205838863 3.29221717821957 3.68079152208964 3.19522413296656 3.41704298861057 3.04745044202907 2.92398591851119 5.16481028126451 0.258449811844153 0.275465891462017 0.253793102976517 0.252496317791633 0.254353882275651 0.259365141756 0.260578648905638 0.267086744541312 0.264306531218510 0.263261428275483 0.255237734969828 0.255561885639854 0.255674316846923 0.255745355610969 0.25741210850887 0.252496317791633 0.271923635869071 0.268597229345628 0.261757107326295 2 2 - 15889624 15890686 15890312.273 15889566 15891057 - gene protein_coding_gene FALSE TRUE AT2G37950.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to zinc finger protein [Brassica rapa] (GB:ABK56014.1); similar to Os05g0452800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055711.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -1.77220456067770 -16.695105455714 4.23743272824412e-09 6.6358196524303e-05 12.6509417177972 7.50518836126971 -1.77220456067770 0.113095909859157 AT1G04680_at 7.82611221765274 7.86689099044749 4.46234715305103 4.53390341620297 5.46761763752463 5.67704811869893 8.17240956832823 8.45171735078367 9.57686977048674 8.7020417526883 9.92259242645497 10.2172399995576 8.33638858218119 9.3781969757135 9.9418054561083 8.02732527755543 7.1063823469581 9.0160001624176 8.49289205076645 0.213999379611607 0.212923622452976 0.245944772361610 0.237129017762023 0.219936904361839 0.239560441291037 0.209590837706599 0.209590837706599 0.218455102859075 0.209590837706599 0.209590837706599 0.214982371381637 0.214665573747164 0.214456701344083 0.212101266126262 0.21111601025505 0.217781005815425 0.209590837706599 0.214265269696240 1 1|0 -|/ 1304066 1304900 1304487.1 1303528 1307881 - gene protein_coding_gene FALSE TRUE AT1G04680.1 pectate lyase family protein Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13710.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.48737328585623 -16.6475595498776 4.36627954848345e-09 6.83672051701539e-05 12.6403294451667 15.5158437705940 -1.48737328585623 0.0620726528548798 AT4G12970_at 5.58902378407789 5.53666270995512 2.28187050669860 2.74454432115665 3.65168757685038 3.29912318406084 4.95817690895611 4.77163771168485 5.52192380253917 5.75609343405662 4.40900407299755 6.8686550737024 4.58000211529747 4.4263197500858 6.7291595430779 5.00975463392202 2.96412476447800 4.01603681129024 7.02156123458127 0.258626973085521 0.242340401955916 0.261202830084026 0.265281029064954 0.245236740930487 0.242019049337412 0.241388112469918 0.247103244118735 0.242432100373627 0.243315546407916 0.238874591474876 0.246618094350174 0.24059225797471 0.242042146401016 0.243166132574549 0.246320574373472 0.271495343299762 0.238874591474876 0.247927548276188 4 4|0 -|/ 7586264 7586741 7586411.111 7586140 7586846 - gene protein_coding_gene FALSE TRUE AT4G12970.1 similar to Os01g0914400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045180.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75419.1) -1.72202313813140 -16.6439231301520 4.37630817775637e-09 6.85198571391315e-05 12.6395150205129 9.59171163092945 -1.72202313813140 0.106102023600769 AT1G66940_at 7.25764043667215 7.56198510853376 2.02930106889509 1.89893748782764 3.67485952273414 3.00406527580250 4.03718258731735 3.14226812848841 8.6980870600302 5.95635527269681 6.04219611015729 7.63132346561528 4.73556825989944 5.99530375301023 7.06062700753274 5.75156167348567 1.8041503740766 4.78733913220131 7.85341163192038 0.288113351227659 0.280692377887076 0.282210079308753 0.285763592919509 0.272838410632852 0.275955692854943 0.285816337268081 0.285843696367696 0.286919478157051 0.277384842440219 0.274480186793369 0.274191129011476 0.275962264030201 0.282076769690356 0.272838410632852 0.275031438405655 0.287140932792129 0.276085844306872 0.272838410632852 1 1|0 -|/ 24976906 24977914 24977459.222 24976691 24978454 - gene protein_coding_gene FALSE TRUE AT1G66940.1|AT1G66940.2|AT1G66940.3 protein kinase-related similar to kinase [Arabidopsis thaliana] (TAIR:AT1G67000.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78903.1) -2.43729374632827 -16.6054018300329 4.48409681748133e-09 7.01985356776702e-05 12.6308633404302 10.5650933071404 -2.43729374632827 0.201848600301138 AT1G30530_at 6.15986361820738 6.36486641582059 4.58824704576981 4.64819666729322 4.29032898575541 4.23893163808573 7.25895544937577 7.13104227664687 6.75856332357085 7.46677909010817 6.00927754517482 7.68549572031369 6.2279130029999 6.27285482169555 6.81577925471462 6.99744750160631 5.61978871694884 5.87909620743926 6.63200089492579 0.251868739445915 0.243699854386083 0.267965497948535 0.266877924598490 0.251734432748904 0.247739882461477 0.259509750504072 0.260693748985807 0.252527502461483 0.243699854386083 0.251510512009328 0.249480210885953 0.250261826206162 0.248889304466776 0.247399269213484 0.243699854386083 0.250886800112914 0.243842115252911 0.243699854386083 1 1 + 10815788 10816237 10816009.5 10814641 10816565 + gene protein_coding_gene FALSE TRUE AT1G30530.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin Identical to Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol-3-O- rhamnosyltransferase) (UDP glucose:flavonoid 3-O-glucosyltransferase) (UGT78D1) [Arabidopsis Thaliana] (GB:Q9S9P6;GB:Q8LAI9); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17050.1); similar to UDP-glucose:flavonoid 3-O-glucosyltransferase [Vitis vinifera] (GB:BAB41020.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.40062351447996 -16.4183306120723 5.05031293129464e-09 7.9037397374761e-05 12.5882080443245 12.2805061950676 -1.40062351447996 0.0439925144388230 AT4G36360_at 6.52604285607248 7.01374575166459 2.86225719066045 2.78097691314992 2.84188388420248 3.65819439313253 8.57775624171438 8.74442659892409 6.99318276491164 8.2944418949946 8.47049479126979 9.47177632037072 7.64337935403112 8.17959490116177 8.95908114881193 8.27445572208312 6.87729770226364 8.11716242523992 8.19621478531124 0.216763540529865 0.197405972003787 0.224970544322902 0.218736370918228 0.215413022498933 0.22055502053896 0.198913348432707 0.197407799106165 0.208797179708950 0.20221110250332 0.200841892885635 0.204769369031638 0.201318601089754 0.200762916055718 0.197405972003787 0.197405972003787 0.206422303790415 0.201747527303596 0.197405972003787 4 4 - 17176865 17177483 17177175.727 17176345 17181264 - gene protein_coding_gene FALSE TRUE AT4G36360.1|AT4G36360.2 BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Prunus persica] (GB:AAW47739.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91082.1); similar to putative beta-galactosidase [Lycopersicon esculentum] (GB:AAF70825.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -2.12922797644635 -16.3790232875471 5.17891785642176e-09 8.10448855351441e-05 12.5791083811813 13.4142113673867 -2.12922797644635 0.167657949530812 AT1G14840_at 5.26936010444317 5.1776181494805 3.25547473804704 3.28862266907692 4.52441004990395 4.20138079527006 6.92583307164226 6.76873212158342 6.20952807428223 6.07032052815366 5.65710778128124 6.75471486689514 5.56079971791366 5.39046370749772 6.32011110841786 5.73425005743295 4.61119077172681 4.8216498432808 6.72269405796693 0.255575255464297 0.244715737903008 0.247815092289460 0.260792441794294 0.240328037225315 0.251441245315531 0.245424968216683 0.257666717851791 0.249767689488061 0.247040231692650 0.24454274274984 0.244343869794282 0.241842756143197 0.261626659899587 0.242710805099541 0.246851592183204 0.243012929929388 0.245472732013845 0.241972772731062 1 1|0 -|/ 5112424 5113129 5112852 5112079 5115423 - gene protein_coding_gene FALSE TRUE AT1G14840.1 ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G68060.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) -1.47290435185401 -16.3743566732579 5.19442118427885e-09 8.12823026915955e-05 12.5780248591374 10.8966623967343 -1.47290435185401 0.0644135354755062 AT2G40960_at 6.32468530684789 6.06799315176777 5.05287864166291 4.31972413587409 5.19649795427509 4.46019918972248 7.1041048948815 6.52791194075624 6.90031299084891 7.8813560938119 5.11540344502619 4.52603020932022 4.15067888369898 4.48160997838276 4.36905195242684 4.95648136177751 4.87722650305966 3.57156047566952 8.08508409684936 0.239333001642806 0.2426833174151 0.239038659695917 0.249107658198997 0.245652614428772 0.243287649990053 0.261140289116886 0.249999815537008 0.262335311575328 0.243152598064765 0.253577881811425 0.239038659695917 0.242436785429965 0.240341434252089 0.243809144965829 0.239038659695917 0.250465723767442 0.247168614192708 0.251006663587518 2 2|0 +|/ 17103601 17104412 17103960.5 17102600 17104532 + gene protein_coding_gene FALSE TRUE AT2G40960.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G56680.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -2.43254727625644 -16.0984608741160 6.20727665929786e-09 9.70818069514185e-05 12.5127375117246 11.6958776078103 -2.43254727625644 0.210355086100644 AT3G10720_at 8.55371695759896 8.90659417083977 5.35984158849209 5.72880226151038 7.24000670854329 7.1921128721757 9.23256695155512 9.33466052211626 10.0864228293506 9.79655260082006 10.0283730291082 10.4709682533608 9.54129813087984 9.5043141915631 10.1999089789543 9.20823656345817 7.4516832654023 9.52770347908858 10.1362334086711 0.155551810373985 0.159913221222477 0.194148698880566 0.190423083319305 0.167759000376525 0.174022968202811 0.16148529423775 0.161320818060776 0.160117713543844 0.160633469128145 0.158558936491360 0.16248730762631 0.162786890755723 0.160205977235038 0.160502984415569 0.158370915482609 0.169846716058753 0.158828977078804 0.156666449372737 3 3 - 3354667 3355417 3354932.818 3354452 3357619 - gene protein_coding_gene FALSE TRUE AT3G10720.1|AT3G10720.2 pectinesterase, putative similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to pectin methylesterase isoform alpha [Vigna radiata] (GB:AAF35897.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070)|similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042865.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:AAT38097.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -1.57076800132542 -16.0519354460283 6.39835300788554e-09 0.000100063842690322 12.5014854528915 17.4425195954827 -1.57076800132542 0.090481482042516 AT3G54090_at 6.49951755213604 6.52269545351592 5.1291745582439 5.3041228658108 4.87644371713579 4.89099771544895 5.82393734270177 5.98096420174004 5.79390296564174 5.7903676023974 3.52912931962078 4.13169024490119 4.280604306611 3.68962302068829 5.15935277447371 5.54165316913848 5.31961940802993 4.50907126589434 6.61584785092358 0.231964149206638 0.232792431611889 0.231031523062331 0.232583447311654 0.234517350605464 0.240097081420245 0.234255084181964 0.235929474126611 0.237671967178262 0.230959208848130 0.235310189152362 0.231953115502772 0.241131065498354 0.23335899438057 0.235034934250709 0.230407314520507 0.243835892522979 0.242861496699173 0.238711921352038 3 3 + 20040233 20040749 20040541.636 20039102 20040964 + gene protein_coding_gene FALSE TRUE AT3G54090.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G69200.1); similar to Os01g0851000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044818.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT81682.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -1.35160356217405 -15.9479128959975 6.84913413400081e-09 0.000107106759587505 12.4760687478159 10.9218812150036 -1.35160356217405 0.0409570994981291 AT1G54040_at 7.80576187850685 7.98351242379657 4.17276306861514 4.59571286076521 3.52185382602728 4.14885042976965 9.63517493615394 9.6689781739191 8.44600907476172 8.93857697890505 9.63404074451765 9.70314634911075 9.6288030123582 9.3131638792493 9.8112265625119 9.95031101801145 8.93760462012203 9.57912438733096 8.3328098804841 0.170299720685180 0.170817996457469 0.186797722795236 0.196264984046815 0.185692623946433 0.18892968534562 0.170299720685180 0.172681864213592 0.185639016219935 0.175183016290602 0.170299720685180 0.171683407381298 0.171683264839845 0.17615655422825 0.172865838678139 0.171250589821062 0.179556936980501 0.182193375454552 0.176640403794088 1 1 - 20174675 20175221 20174915.545 20174383 20177617 - gene protein_coding_gene FALSE TRUE AT1G54040.1|AT1G54040.2 ESP (EPITHIOSPECIFIER PROTEIN) epithiospecifier protein similar to ATMLP-470 (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470) [Arabidopsis thaliana] (TAIR:AT3G16400.2); similar to epithiospecifier protein [Brassica oleracea var. italica] (GB:AAY53488.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -1.83317477326594 -15.9413414097188 6.87875024901465e-09 0.000107563017643842 12.4744509506277 15.5126473912118 -1.83317477326594 0.134577034211902 AT4G04840_at 5.1789285272795 5.87031154538172 2.63765652694329 2.11362249900054 1.85197999293475 1.91986259414437 6.71487037816612 6.63213257320846 8.17135527671464 7.05548788161633 8.18281665010738 8.67118486903441 8.34689952010457 7.9834781957737 8.61554036023425 8.7807880683328 5.7729082073731 8.13766469987734 8.7564652654091 0.263244217739873 0.262283903642546 0.285079517444178 0.28236191220808 0.274329689837188 0.289762018103964 0.266499396471253 0.257869976890878 0.26154017860911 0.257648345667015 0.258410982749241 0.257648345667015 0.257648345667015 0.257648345667015 0.2680605419148 0.257648345667015 0.276106628045382 0.257991160704539 0.260961338412082 4 4|0 +|/ 2449772 2451249 2450315.5 2449558 2451587 + gene protein_coding_gene FALSE TRUE AT4G04840.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21850.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) -1.9506532113226 -15.9387633299743 6.89040707606212e-09 0.000107738405041307 12.4738158714871 12.1428436859330 -1.9506532113226 0.151269548658350 AT4G13560_at 5.42614089265613 4.76691195497969 3.30512812367626 2.77468973746989 2.41124936225732 2.22162475606822 5.67070914437991 4.78069363854807 7.66501970878934 6.06136341824503 5.0486683909063 4.37973377829028 4.11995724680594 4.00164472551774 4.76859616396164 4.15856224915484 3.84812183580348 4.8296531270861 6.60085085728745 0.279597560990283 0.276504985725385 0.281140981168263 0.284466726846150 0.289798707111695 0.293250707552358 0.273646612074895 0.276145037633970 0.293117506787161 0.286828423652521 0.274769996591603 0.276836754731622 0.275337192539888 0.273646612074895 0.273646612074895 0.278939464787727 0.277906078123639 0.281535979837778 0.286958877289006 4 4|0 -|/ 7879790 7880281 7880003.5 7879557 7880379 - gene protein_coding_gene FALSE TRUE AT4G13560.1 UNE15 (unfertilized embryo sac 15) similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to putative LEA III protein isoform 1 [Corylus avellana] (GB:CAC39160.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -2.43215919226142 -15.8439148299099 7.33457510478191e-09 0.000114668747188160 12.4502949538882 9.50469937682013 -2.43215919226142 0.215036193694284 AT3G29030_at 6.94876489902205 6.73016670553401 3.66084663657951 2.86501838461348 3.90904681955227 4.05720468488855 8.31912864069192 8.24940537582557 8.04488971809467 8.26160143206976 9.47806831326273 9.7257704735738 8.256475264556 8.50427857322108 9.54655771271528 8.21097220569103 6.51167748541991 7.8700268930915 8.80735303011423 0.209100652770142 0.206224475356065 0.220814137276819 0.218149046524584 0.219076355210955 0.233664447863160 0.202248339578325 0.204505946965107 0.211815651749207 0.202248339578325 0.208441810744682 0.215190730865079 0.202248339578325 0.206807396720290 0.213908332660441 0.202248339578325 0.213407331271841 0.207986060561448 0.203169903595616 3 3 - 11012783 11013761 11013335.455 11012545 11014595 - gene protein_coding_gene FALSE TRUE AT3G29030.1 ATEXPA5 (ARABIDOPSIS THALIANA EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A5 precursor (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) (EXPA5) [Arabidopsis Thaliana] (GB:Q38864); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin [Cicer arietinum] (GB:CAC19183.2); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.89857015104737 -15.8434975485178 7.3365967427665e-09 0.000114693016879669 12.4501907994394 14.0345776476472 -1.89857015104737 0.145606744481675 AT3G29670_at 5.82127722713955 5.84181396881485 4.73038909948096 4.97740932968424 5.7176205596475 5.64905779744345 7.00530158558384 6.85897290711928 6.93480403227065 6.7190310708508 5.53430782865483 5.2296336918992 4.85882334749702 5.33455649495858 5.13740077559414 5.80839458492989 5.87638022752042 5.09081788630991 7.12230325284192 0.23534185869402 0.235778677982077 0.229459659465143 0.224655578773879 0.240396252381702 0.236262116927298 0.228033059864527 0.22947105338162 0.228748817960233 0.225247057100262 0.232665774821540 0.224171667137953 0.237141609472801 0.232950957627267 0.229489811071197 0.228517126063 0.239198813646496 0.232222876193845 0.226352034927675 3 3 + 11531213 11531748 11531459.727 11530351 11531829 + gene protein_coding_gene FALSE TRUE AT3G29670.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G29635.1); similar to AT5g39050/MXF12_60 [Medicago truncatula] (GB:ABE91277.1); contains InterPro domain Transferase; (InterPro:IPR003480) -1.33990616145882 -15.4410684277842 9.60061525466994e-09 0.000150000012738963 12.3469111643776 11.9673147126934 -1.33990616145882 0.0512059616049121 AT4G19710_at 7.06640915669294 7.17224283458265 5.20869018259489 5.55049113108519 6.29712961810481 5.88004057842209 8.76061117313047 8.52498967664003 7.17861596621193 8.13517971361646 6.36602634303071 6.97852235796784 6.55978805943278 6.50282186309273 6.70832280035267 6.75185490610015 6.69087451530702 6.85003447763994 7.69036356609887 0.223555015753446 0.217991965943959 0.23589229874886 0.226672175057809 0.220958675948926 0.226552184566308 0.226505534088900 0.220460485408874 0.231943528061739 0.223959798259284 0.217991965943959 0.220591387503326 0.225394725198202 0.222673768562195 0.224002415799824 0.220434809806228 0.223224825671342 0.240325369458639 0.220849608247886 4 4|0 +|/ 10728797 10729522 10729242.4 10724865 10729778 + gene protein_coding_gene FALSE TRUE AT4G19710.1|AT4G19710.2 AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase|AK-HSDH/AK-HSDH II Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. Identical to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) (Beta-aspartyl phosphate homoserine 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (AKHSDH2) [Arabidopsis Thaliana] (GB:O81852;GB:Q3E9Y8); similar to AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I), aspartate kinase/ homoserine dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G31230.1); similar to Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I [Medicago truncatula] (GB:ABE90460.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05981.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05983.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Bifunctional aspartokinase/homoserine dehydrogenase I; (InterPro:IPR011147); contains InterPro domain Homoserine dehydrogenase, NAD-binding; (InterPro:IPR005106); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -1.56949887466003 -15.315311206101 1.04562253840823e-08 0.000163336696724749 12.3134411549165 13.9796174175773 -1.56949887466003 0.103473001744395 AT3G51240_at 3.44520682140693 3.66913321357332 2.80674782189102 2.96886638528981 2.56368118003737 2.86216821384665 7.56724789069537 7.62128361090782 3.81748401666218 5.29030798358147 4.16823986253127 4.67170467448909 4.66049761494776 4.86130188533554 3.9266373177017 4.47429083986864 4.71303994253186 4.63694856304301 4.40086462129436 0.194701601725758 0.189884949369563 0.191991293021036 0.200442868517134 0.194738742008333 0.189884949369563 0.215902333518435 0.219642218121342 0.199770118825579 0.197721842242264 0.189884949369563 0.192661862107641 0.191057827685107 0.194309457509082 0.196994394391366 0.189884949369563 0.217464592021711 0.195406746994526 0.192723896483376 3 3|0 +|/ 19037029 19037609 19037317.8 19036243 19037918 + gene protein_coding_gene FALSE TRUE AT3G51240.1 F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Identical to Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavanone 3- hydroxylase) (Naringenin 3-dioxygenase) (FH3) (TRANSPARENT TESTA 6 protein) (F3H) [Arabidopsis Thaliana] (GB:Q9S818;GB:Q38877;GB:Q9C526;GB:Q9C528;GB:Q9C530;GB:Q9C563;GB:Q9C5V7); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G24530.1); similar to flavanone 3-hydroxylase (GB:AAC49176.1); similar to Naringenin,2-oxoglutarate 3-dioxygenase (Flavonone-3-hydroxylase) (F3H) (FHT) (GB:Q05965); similar to flavanone 3-hydroxylase 1 [Brassica napus] (GB:ABB91635.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -1.38207746841811 -15.0613612562635 1.24481430176367e-08 0.000194327960648326 12.2440389381990 8.69652595624042 -1.38207746841811 0.0710240936298259 AT1G27120_at 4.50113845837557 4.60061465003958 2.76712491004158 3.09214507808825 3.42962635818517 3.52568325448819 7.18550968677409 7.57032115844624 6.31265444701741 7.17427352388057 7.43561913182388 7.9108825698182 6.63048722049306 7.20533722188153 6.86535227991201 6.19722913014305 5.03133254708631 6.08896443765745 7.07463746726931 0.241633926375508 0.243293590457706 0.248357471001774 0.242386156216003 0.243079680314243 0.244829856878135 0.249227600308503 0.23988238921139 0.247811979523688 0.240359442849694 0.242497376010035 0.240196789042869 0.23988238921139 0.242786786149512 0.240651360171254 0.23988238921139 0.24923883188682 0.243576724910351 0.23988238921139 1 1 + 9423096 9423870 9423584.091 9421164 9424056 + gene protein_coding_gene FALSE TRUE AT1G27120.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74800.1); similar to galactosyltransferase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83183.1); similar to galactosyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99414.1); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -1.47197783345595 -15.0469745562458 1.25727340704615e-08 0.000196247806105833 12.2400329183524 11.3462733010087 -1.47197783345595 0.0903935955343577 AT3G15310_at 0.157173015868291 0.445123385783845 1.27077024989214 0.785389230538438 0.432946298271139 1.09246211340814 5.09776673613147 4.81328521358951 3.78179000307437 5.20151406080986 2.75201614037451 2.48217125998538 1.80878338582591 2.74656915544115 1.78523441317862 2.53710790553358 1.84178738439014 1.93677151506397 3.84417386235956 0.452395219191946 0.434277292021991 0.464301155104404 0.454358232285340 0.437691913895636 0.434277292021991 0.485058240771304 0.477693859639498 0.475916368222833 0.465777355717563 0.461896779372844 0.434277292021991 0.445176456460047 0.434277292021991 0.441655097901221 0.459714315949206 0.434277292021991 0.450696610793435 0.467733941769236 3 3 - 5152638 5152849 5152732.8 5152106 5153649 - gene protein_coding_gene FALSE TRUE AT3G15310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966) -1.88623297262812 -15.0288535003984 1.27315993572589e-08 0.000198714802768097 12.2349755380044 5.01793009062975 -1.88623297262812 0.158077738824196 AT4G23300_at 8.0832664090452 8.07080150394336 6.54892353816062 6.19976444728201 7.5829348787301 7.16139937852885 8.5633475326193 8.3543155639818 8.49419342101824 8.38176398808912 7.1174929850989 6.80583694173633 6.66981516103393 7.05495440966677 6.67343831352454 6.624051971338 6.44307716729825 6.60932203244046 8.32522348052241 0.207807732068734 0.209280510175567 0.217107064124138 0.208729154265243 0.201371349411545 0.224919032124754 0.201371349411545 0.204494588732627 0.210816701041652 0.201371349411545 0.206741649181848 0.203249875080869 0.207924440062104 0.204879619885383 0.201371349411545 0.201371349411545 0.209973615748628 0.219306101740454 0.202782871325953 4 4|0 +|/ 12183772 12184498 12184232.9 12181942 12184714 + gene protein_coding_gene FALSE TRUE AT4G23300.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23210.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.52266109941573 -14.9689509253922 1.32724955567082e-08 0.000207143838153545 12.2181655433164 15.1456652828583 -1.52266109941573 0.101418594768820 AT2G29120_at 8.68808962333885 8.80901013510301 7.85419667177982 7.91745885373804 7.95279236444918 7.75679812022477 7.21158490827991 7.00268643225969 7.47653712215153 6.10854911761353 4.40201779329458 3.82049365608291 4.33256915610892 4.91410033030302 3.49393909656342 3.68506538551114 4.38181523184693 4.04916818915882 6.48387904531929 0.235098712316098 0.235098712316098 0.237029856398986 0.236452329039894 0.240298671915662 0.243223297398907 0.237799023741723 0.243073748460203 0.260579037470876 0.235098712316098 0.238365234162297 0.242507078803119 0.243954039711205 0.247657223817941 0.252478324598576 0.251017824047691 0.246416705038860 0.242450824513909 0.235098712316098 2 2 - 12518605 12519233 12518839.727 12518369 12522972 - gene protein_coding_gene FALSE TRUE AT2G29120.1 ATGLR2.7 (Arabidopsis thaliana glutamate receptor 2.7) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GLR2.7) [Arabidopsis Thaliana] (GB:Q8LGN0;GB:O81080;GB:Q8RY02); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.8 (Arabidopsis thaliana glutamate receptor 2.8) [Arabidopsis thaliana] (TAIR:AT2G29110.1); similar to ATGLR2.9 (Arabidopsis thaliana glutamate receptor 2.9) [Arabidopsis thaliana] (TAIR:AT2G29100.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.5 precursor (Ligand-gated ion channel 2.5) (GB:Q9LFN5); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -1.30614513118341 -14.9096606843372 1.38325662822214e-08 0.000215843364267783 12.2013873818848 13.3113527385901 -1.30614513118341 0.054909399695445 AT2G31890_at 6.13322114638065 6.32535618507596 5.40242314685926 5.45972390722494 5.66246510139301 5.68869073625286 6.47956196905174 6.449639826796 5.94424703456545 6.81888764532933 4.05333648338702 4.13235327137548 4.6804944883964 4.18329441820526 5.59369651625351 5.70619197119387 5.67137215309037 4.75117875095122 6.88988929810982 0.170628490529176 0.170628490529176 0.176663294569730 0.17511785175429 0.171604643818861 0.175264570376161 0.172476345618448 0.170628490529176 0.186772648059447 0.180260273262131 0.175880314804989 0.1852624791834 0.170628490529176 0.172092810602589 0.177708792950712 0.173084710978695 0.172926826710149 0.173223701232878 0.179792015950949 2 2|0 -|/ 13564445 13565037 13564768.2 13564008 13566844 - gene protein_coding_gene FALSE TRUE AT2G31890.1 similar to Os03g0425000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP20833.1); contains InterPro domain RAP domain; (InterPro:IPR013584) -1.24906864747757 -14.9014898638299 1.39117446606104e-08 0.000217064951939504 12.1990641747522 11.6488841270167 -1.24906864747757 0.0353736469363549 AT3G10050_at 4.72982620404715 4.48072015934695 3.32932971750333 3.97401263055814 3.67717174180144 3.84972860822778 7.24969217876852 7.78718826141992 5.23809731595469 5.98099732427031 3.8722222597887 4.29906241644294 4.05196715338920 4.19920255660366 4.19565050201557 5.46075711060782 4.98607031363465 4.51282392498998 6.10837350383844 0.225510818991069 0.217984928181843 0.219872681563339 0.219134137285901 0.217984928181843 0.219716898234792 0.218517151080789 0.22866362864684 0.228666856873668 0.221064934245552 0.219531622560706 0.217984928181843 0.220668744546269 0.221339188839150 0.220929953350813 0.223102347048122 0.221687803323211 0.225447768733822 0.218184741128814 3 3|0 -|/ 3099209 3100027 3099514.2 3098730 3101766 - gene protein_coding_gene FALSE TRUE AT3G10050.1 OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase first enzyme in the biosynthetic pathway of isoleucine Identical to Threonine dehydratase biosynthetic, chloroplast precursor (EC 4.3.1.19) (Threonine deaminase) (TD) (OMR1) [Arabidopsis Thaliana] (GB:Q9ZSS6;GB:Q9SPF1); similar to ATSR (ARABIDOPSIS THALIANA SIGNAL-RESPONSIVE), serine racemase [Arabidopsis thaliana] (TAIR:AT4G11640.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74610.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74611.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74612.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Threonine dehydratase, C-terminal; (InterPro:IPR001721); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Threonine dehydratase I; (InterPro:IPR005787) -1.84144960568835 -14.8711186601181 1.42104039224915e-08 0.000221710721998712 12.1904052489713 9.9962298098951 -1.84144960568835 0.154431076146551 AT1G49010_at 6.92544628409203 6.33886770342187 5.49644900755764 5.42824651886908 5.25281293403573 4.92787475978578 7.8558062386768 7.56876450113169 7.41984473177519 7.57588401435126 5.86636963136768 6.26421146568136 5.45996503886172 6.09905971537532 6.72379776318142 6.01504157198354 5.97389095030378 6.74198882469246 7.60233750144405 0.227012217812219 0.218363079318269 0.225482037370654 0.227390590657706 0.222715356850091 0.229918150496289 0.218363079318269 0.225874276182946 0.226594110323275 0.218612632752385 0.221415066198896 0.221578294422066 0.223245986109558 0.228824216594349 0.219787315427846 0.220578082973375 0.230053326713335 0.219842184651096 0.218363079318269 1 0|1 /|+ 18137033 18137384 18137251.5 18136313 18137593 + gene protein_coding_gene FALSE TRUE AT1G49010.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G08520.1); similar to MYB transcription factor MYB109 [Glycine max] (GB:ABH02851.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.6427617528889 -14.7081805642017 1.59364756186278e-08 0.000248577146699357 12.1433116759401 13.0621481781319 -1.6427617528889 0.126779967999788 AT1G75680_at 8.81116957617568 8.92225821085032 6.0487990293504 6.35680156784466 7.74436751155428 7.5959891628669 10.2432613953110 10.2221511983512 10.1847348159714 10.3436304540741 10.7583941917259 10.7618662463329 10.1595911254885 10.1435356757231 10.4072049113262 9.94635794729982 9.39842141245554 10.4858505134335 10.2909598298343 0.167720641578993 0.165533245119049 0.213309115008155 0.206880099708875 0.188715381864749 0.187890003875993 0.164173897928213 0.162334778936696 0.168470345008629 0.165017318431584 0.165653201865728 0.163909585155474 0.167750798981376 0.162671327654088 0.163268520417535 0.162334778936696 0.168871470754863 0.162334778936696 0.162334778936696 1 1 - 28420890 28421544 28421132.545 28420713 28423190 - gene protein_coding_gene FALSE TRUE AT1G75680.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1); similar to Os06g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058583.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE81087.1); similar to Os09g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063771.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.31433819546070 -14.7006050360465 1.60220917280855e-08 0.000249896564682949 12.1410956147141 18.5084802663379 -1.31433819546070 0.0623160264663306 AT2G40100_at 7.97756889678657 8.22327209274438 6.28071121389391 6.69701370939125 6.30704003026707 5.92477488010503 8.9283774849183 8.90797122040076 8.71850105352346 9.69060679415817 8.40450720006062 8.85974838154234 7.13479835546098 8.1889038922276 8.96757784565597 9.00044683744496 7.01269413445778 8.20659096132418 8.73369067463274 0.204276560755922 0.201808076070127 0.213339360507654 0.205820748809569 0.214429309269614 0.226912965957183 0.201059536649086 0.216236231980598 0.220396731435234 0.205735475341003 0.197885249170137 0.204139887447554 0.209952609557206 0.197323314321318 0.195463878570099 0.201085371928108 0.217885939857406 0.211498667154710 0.197897239835880 2 2 + 16753248 16754244 16753831.273 16752881 16754478 + gene protein_coding_gene FALSE TRUE AT2G40100.1 LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidopsis Thaliana] (GB:Q9S7W1;GB:Q8L9J2); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -1.51630176085725 -14.6231569527426 1.69266653806365e-08 0.000263954419945646 12.1183026502805 16.0405951702934 -1.51630176085725 0.106709060048043 AT3G15270_at 1.77758833645446 2.00283725922262 1.49558171782733 1.7039760330642 1.74965657162953 1.97475058176292 2.57507838312371 2.90576326563322 7.60723565739328 4.75995839405872 4.44630178257494 2.88397156371189 2.63406151738985 3.54260339983153 4.10909773414862 2.52860683275294 2.103344830364 2.87313297341335 3.79005747691535 0.235438516809689 0.2431492852788 0.254532510153696 0.242054102548631 0.239446339932400 0.240622048679254 0.240448493723783 0.240053520072254 0.281838904198611 0.264292638593521 0.257870422292626 0.236395558999022 0.242746908094547 0.235438516809689 0.238697001328527 0.239749079459011 0.240044828554659 0.240936561549571 0.24665227709196 3 3|0 -|/ 5140656 5141230 5140959.9 5140372 5141353 - gene protein_coding_gene FALSE TRUE AT3G15270.1 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. Identical to Squamosa promoter-binding-like protein 5 (SPL5) [Arabidopsis Thaliana] (GB:Q9S758;GB:Q9SMW8); similar to SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53160.1); similar to SBP transcription factor [Gossypium hirsutum] (GB:AAV51939.1); contains InterPro domain SBP; (InterPro:IPR004333) -1.41496800760995 -14.6219565282216 1.69411160145197e-08 0.000264162822014406 12.1179473891587 6.28609931295434 -1.41496800760995 0.0872485723471356 AT3G10840_at 6.39249791427727 6.29960054215377 4.48973669514857 4.13028057171425 5.42158166129831 5.03445845945363 8.1297436701025 8.00250125150716 6.63967268868629 7.05884489887291 6.25851144588159 7.18552910617855 6.3006084413726 6.57428633826931 6.77635326076186 6.55341668637619 6.08605924474119 5.8813660241454 7.03397290525369 0.184264263997653 0.181275365381286 0.190244168030815 0.205811654070045 0.177131391066738 0.197242449680318 0.188058893459063 0.181434058577617 0.188102903714055 0.177131391066738 0.194446450499778 0.182205904592441 0.187171523885971 0.177131391066738 0.180380624786249 0.181725456276846 0.186700331515090 0.185268419191519 0.185476694928929 3 3|0 -|/ 3391320 3392032 3391627.8 3391070 3393295 - gene protein_coding_gene FALSE TRUE AT3G10840.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G15490.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95656.1); similar to Os12g0118400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066007.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -1.44794267170580 -14.5437817729098 1.79117000834243e-08 0.000279261316000668 12.0946807977384 12.6689733370753 -1.44794267170580 0.0953990628579198 AT1G15290_at 8.30783052843348 8.34897497140618 6.80009447783294 6.85787844046567 7.6330766816837 8.07668681400028 9.31331223826505 9.41040081386713 9.7644844622953 9.5870919219483 8.34557082808476 9.05916468394208 8.22450324332944 8.13037501799406 8.63997670089034 8.47575324948232 8.04666170767133 8.48206249688174 9.58816464848769 0.167493469737188 0.162470398675997 0.187517543479131 0.185150444662031 0.176204846508877 0.166354093797753 0.169800225426378 0.164398466361715 0.170899601709074 0.164291355165196 0.164790255428338 0.163943162326372 0.167074583582267 0.168930428667619 0.164770178803394 0.164959026411839 0.168085997131749 0.168533663831071 0.16329042199764 1 1 - 5257326 5257894 5257650.091 5257041 5264809 - gene protein_coding_gene FALSE TRUE AT1G15290.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G28080.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G01320.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to H0811D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86110.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.36213369385328 -14.4452848366177 1.92216330394976e-08 0.000299607594186649 12.0649945104861 17.1295762883834 -1.36213369385328 0.0795389041685413 AT4G15430_at 2.12035441263478 1.91478190006776 1.73023320308701 1.95753595833444 1.51166742020449 1.31105296622842 3.25891520161276 2.94446161542693 3.58530774463242 3.64462942771822 1.29821272542423 1.32734753004994 1.91258046308341 2.00567493858083 1.26051929153057 2.22610557157554 1.84997281962909 2.03859513227252 3.34847717040848 0.196323182414596 0.199104019258188 0.196989859677013 0.198261485184324 0.196550571916441 0.197590372682904 0.202206394705813 0.196323182414596 0.216944642491427 0.198959797234314 0.209713001534326 0.2036904177036 0.209130861562785 0.202131269995324 0.196323182414596 0.196323182414596 0.196323182414596 0.196323182414596 0.199255857968986 4 4 + 8830684 8831267 8830965.778 8827876 8831503 + gene protein_coding_gene FALSE TRUE AT4G15430.1 similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G04340.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) -1.35913397535337 -14.2227560154009 2.25813063667359e-08 0.000351884497112846 11.9963658126521 4.72663242133523 -1.35913397535337 0.083543260078854 AT3G47010_at 4.9475057697258 4.51789627265891 2.83666716680355 2.47029235909535 2.95559751429710 3.06917477434779 3.79944218414446 3.42314392934795 5.80032320986506 5.43780840931575 4.24532230062545 4.37341421904091 3.60803706750728 3.30753576034969 4.73044622400352 3.62000310861629 3.6419521204257 3.83225095854451 5.63564558361906 0.218473098806304 0.218743909620852 0.213976700961612 0.235282506770189 0.218719300943613 0.214315780121664 0.213388250955668 0.214088521943268 0.220410512745782 0.217939025676672 0.210513442973047 0.216218788650616 0.216403782965373 0.218656088469261 0.214892056219409 0.211272989678100 0.216369069038841 0.231558330179401 0.227857797466585 3 3|0 -|/ 17327775 17328389 17328009.556 17327638 17330516 - gene protein_coding_gene FALSE TRUE AT3G47010.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47050.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47040.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47000.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to exo-1,3-beta-glucanase [Lilium lon (GB:BAD13764.1); similar to exo-beta-glucanase [Lilium lon (GB:AAR14129.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -1.52189313318873 -14.0240396101805 2.61255331088789e-08 0.000406905178170789 11.9331970207161 8.27469630671384 -1.52189313318873 0.119055444759832 AT4G21870_at 5.8291889062062 6.18294738732054 3.68560406556322 4.19386227336161 6.26055697193356 5.57333953872691 6.07710489571976 6.6106479139949 8.2063344406763 7.74262751767401 5.1298023965281 3.74455519391569 4.50168381500249 5.85330460496567 4.34292995467905 8.64835774972952 5.24815476642367 4.08245981472996 7.4816366108333 0.274465633652742 0.267397131796368 0.270987110437660 0.271366729191996 0.270925832893129 0.279976164200861 0.2738825656502 0.267397131796368 0.291019172994101 0.269376872776394 0.267397131796368 0.270759030217314 0.267397131796368 0.270716060263419 0.268079381771919 0.267397131796368 0.281247245661178 0.273031269355789 0.272109035296541 4 4|0 -|/ 11603770 11604237 11603956.3 11603580 11604343 - gene protein_coding_gene FALSE TRUE AT4G21870.1 26.5 kDa class P-related heat shock protein (HSP26.5-P) similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83716.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -1.93146252473923 -13.9679028531146 2.72332019706500e-08 0.000424102654288932 11.9150210333197 12.0537092741323 -1.93146252473923 0.184804833346873 AT4G35770_at 10.4299616063022 10.2642642529300 7.93792047409326 7.7471066522832 11.1365458343821 10.7298695943552 7.37370276856078 7.55790523836756 9.57987014730848 8.92394865140843 6.357666726034 5.56244723368987 6.56495630959308 6.77777623800285 4.94076701362216 6.53338765483355 6.89945371993787 6.78799224893663 9.98291052736803 0.216226742854804 0.222790124023384 0.221675324532243 0.221351106933649 0.223406507597313 0.225938542911652 0.226697023713906 0.216782207973781 0.228832430427117 0.21606491476043 0.221630045428863 0.226067577199428 0.221329419770133 0.222951282255157 0.246918691034303 0.218275039409299 0.228388443612653 0.227015499224219 0.21606491476043 4 4|0 +|/ 16945085 16945935 16945427.4 16944946 16946197 + gene protein_coding_gene FALSE TRUE AT4G35770.1|AT4G35770.2|AT4G35770.3 SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. similar to senescence-associated family protein [Arabidopsis thaliana] (TAIR:AT5G66040.1); similar to din1 [Raphanus sativus] (GB:BAA20356.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -1.35555918835439 -13.9345429092434 2.79155625113548e-08 0.000434673223864306 11.9041494933285 17.0464757202141 -1.35555918835439 0.0887791747576194 AT1G72040_at 6.54509811160059 6.6349136580353 5.28178220549411 5.58414066838522 5.51040362119331 5.52673617755829 7.38866776163462 7.45147633253917 5.65314458890711 5.88135403303841 4.63910657078597 5.0044573406938 5.17798398389592 4.36267491466335 5.34410136881713 5.35693507271921 5.79902613762289 4.69775908306092 6.32328492871637 0.252333175156924 0.251357169682792 0.246183488564451 0.248116166099487 0.246183488564451 0.258555562852931 0.250875782473123 0.255899304705095 0.250970404910896 0.246814400990321 0.255315766716756 0.248607439281316 0.246183488564451 0.246590639917349 0.254828382451656 0.246183488564451 0.255494527192908 0.250447352807139 0.247778387601848 1 1|0 -|/ 27115861 27116552 27116214 27115556 27118004 - gene protein_coding_gene FALSE TRUE AT1G72040.1 deoxynucleoside kinase family similar to unnamed protein product [Homo sapiens] (GB:BAD18437.1); contains InterPro domain Deoxynucleoside kinase; (InterPro:IPR002624) -1.21705612782479 -13.8626837100077 2.94494081252642e-08 0.000458497835102238 11.8805520210014 11.7405773550149 -1.21705612782479 0.0557276703823336 AT3G21870_at 5.28912821723124 5.61318347970471 4.56781559330098 5.10105827506663 5.16680514057983 5.20940620809503 7.62698194337173 7.65310108815021 7.83074329624097 7.51190632725884 5.45726993810609 6.66500676287579 6.2753850632886 6.19652533118362 6.731662037434 7.2714576588091 6.32696636184987 5.66736320534741 7.69908920925255 0.255485499504954 0.247253344387141 0.255421540687176 0.25890810552502 0.256514318714252 0.259149802222362 0.243360381770287 0.246904525176138 0.252912398556045 0.251000666921388 0.241982833616125 0.245871592264473 0.249739212773662 0.247571259219540 0.250508724276256 0.241982833616125 0.258930929008356 0.241982833616125 0.252100116923780 3 3 - 7703944 7704720 7704391 7703873 7704836 - gene protein_coding_gene FALSE TRUE AT3G21870.1 CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase similar to CYCP3,1 (cyclin p3,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G45080.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -1.44547622195475 -13.8578115252966 2.95566730634641e-08 0.000460138286252010 11.8789431338154 12.7807020710772 -1.44547622195475 0.108329542344494 AT2G47630_at 2.78653877425 2.47249435757664 1.48556940627239 1.72414285636555 1.87330831330277 1.81957599118977 3.44552093659749 3.87111802506881 5.40333853621922 4.70202692396374 3.60604894772734 4.86892363368639 3.20513956456249 3.40218921994077 4.38789994944512 3.10182275985292 2.18995891766692 4.17312555647730 4.92161525773064 0.258475540863222 0.253682671038588 0.261637086613649 0.257022773642773 0.260782790374422 0.256938604206091 0.256010138886292 0.255224577477259 0.272060446118367 0.268801136633561 0.253682671038588 0.263112752729883 0.259020557812847 0.261153777987461 0.255730997846227 0.253682671038588 0.256330995263652 0.256463662775897 0.259541411364059 2 2 + 19543309 19543957 19543743.909 19541573 19544084 + gene protein_coding_gene FALSE TRUE AT2G47630.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G62860.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -1.40518694277929 -13.8427845437325 2.98901877843020e-08 0.000465300553238229 11.8739737559540 6.74772465323181 -1.40518694277929 0.100842210635547 AT2G38010_at 7.35473511209733 7.67415583906969 4.80740279382217 5.10948173292452 5.33369140546641 5.09398902371177 7.45215737705307 7.73426986182403 7.64875338769702 7.48445842760681 7.23586463926536 8.1740635884398 6.74726378476669 7.44207562635971 7.7047871917198 7.06883469333965 6.29034273598177 7.03008974031955 7.4341847106127 0.20506061635699 0.204256432037543 0.224254825678575 0.214377739189827 0.211277869457489 0.217519298845073 0.206719236984177 0.209651571218281 0.211811203321933 0.208594161259611 0.204256432037543 0.204256432037543 0.207137185852003 0.209678208088336 0.210706310338418 0.207123696962125 0.221634366592344 0.204256432037543 0.205653428824535 2 2 + 15916258 15916915 15916654.818 15913940 15917009 + gene protein_coding_gene FALSE TRUE AT2G38010.1|AT2G38010.2 ceramidase family protein Identical to Neutral ceramidase precursor (EC 3.5.1.23) (NCDase) (N-CDase) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase) [Arabidopsis Thaliana] (GB:Q304B9;GB:Q3EBK8;GB:Q7XJQ9); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823)|similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823) -1.38924428357231 -13.7537517579983 3.19520850595155e-08 0.00049723834769618 11.8443068305995 13.6870507725776 -1.38924428357231 0.0994614231087677 AT1G75250_at 5.99944624848954 6.71811567929458 4.82760466122302 5.31888797763852 5.54012590362734 5.45450922820855 7.55073900408267 7.9443755057719 6.46629441882779 6.70126379328296 4.43842872903218 5.78174916400175 5.90152133021625 6.00681689951035 3.42362677937279 6.08836054499876 5.09933671969946 3.77501626431614 7.36154856797683 0.222383084840447 0.220934303922672 0.242624025934305 0.223198407504317 0.222644715875866 0.236033945145856 0.221580133217544 0.237857355714520 0.232748873774626 0.222327597613997 0.226296156215427 0.222362391217035 0.219623956752931 0.221938875811179 0.244373347995287 0.229889181071970 0.231769260218379 0.234994488286732 0.224901858045753 1 1 - 28248810 28249074 28248968.636 28248009 28249114 - gene protein_coding_gene FALSE TRUE AT1G75250.1|AT1G75250.2 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus (GB:2CJJ); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.77328285310219 -13.7237743050550 3.26807209257948e-08 0.000508512017605367 11.8342309846820 12.12292184967 -1.77328285310219 0.165999474622963 AT1G08840_at 3.04522518521854 3.07518544192334 2.34148229930260 2.17553450998371 2.45716705024787 2.51693971005879 3.7574742266464 3.98701541993223 4.04538747409648 3.66255969173616 3.10991238962333 3.13601400938657 2.94697119120737 2.49471200554045 2.45122110117 2.99089219050158 2.53167053845427 2.3790214192053 4.40342571800215 0.20811961233387 0.205765272902698 0.210200532473067 0.207638992757127 0.217169517990802 0.206913325369652 0.200529276135768 0.212000207791573 0.204523809206545 0.204916562014303 0.204709745000085 0.205054041324351 0.206804647010383 0.213381628602561 0.199460767234189 0.200398516896143 0.205314864334125 0.200299134228220 0.205639187313922 1 1 - 2829638 2830830 2830117.545 2829582 2838372 - gene protein_coding_gene FALSE TRUE AT1G08840.1 EMB2411 (EMBRYO DEFECTIVE 2411); ATP-dependent DNA helicase similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G03270.1); similar to OSJNBb0016D16.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE04326.1); similar to hypothetical protein MG02491.4 [Magnaporthe grisea 70-15] (GB:XP_365789.1); similar to Os04g0588200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053694.1); contains InterPro domain UvrD/REP helicase; (InterPro:IPR000212) -1.18775830750369 -13.7163792714411 3.28632300162543e-08 0.000511318995822901 11.8317386233892 6.31559105553804 -1.18775830750369 0.0503640260077507 AT2G34640_at 6.69743337220223 6.68668166530552 5.367732796093 5.77565812598059 6.02990761918353 5.89943787923564 6.86075468871911 6.92157940241727 6.19093395872758 6.93531343898762 4.92652323222206 5.83770021514083 5.27593974401508 5.10647440740264 5.27301347517845 5.53154110147385 4.98418064647845 5.08903233742341 7.1461791787173 0.20396743416408 0.207057197393453 0.227632337389309 0.210823055650070 0.209738023238833 0.201288127873984 0.211697095804796 0.201288127873984 0.215149870911085 0.207296799482204 0.208101682504490 0.201847118837984 0.209427859131546 0.218270823811712 0.214556849485245 0.205695502016857 0.224157086872751 0.216607988206236 0.201730533105034 2 2|0 -|/ 14589159 14589893 14589478.222 14588965 14591778 - gene protein_coding_gene FALSE TRUE AT2G34640.1 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to hypothetical protein MtrDRAFT_AC144478g3v1 [Medicago truncatula] (GB:ABE93314.1) -1.26392652879925 -13.6075703384859 3.56807080775984e-08 0.000554977733438965 11.7947534298177 12.2851612788393 -1.26392652879925 0.0748830292238073 AT1G23090_at 5.78199463566354 6.57775694959863 4.27846735910313 4.36951547630534 3.27333977893682 2.92915738051154 4.7628517612157 5.16015522502731 6.13417187790816 5.30330181505361 4.15105618379127 4.01165276857616 3.06103013917276 3.91432062940787 3.24166440970188 4.20737153484428 3.33868094471773 4.06812847131106 4.77167207927434 0.264426639916187 0.245754618681373 0.245903339045436 0.252328364527223 0.249761267647565 0.251330688794263 0.251084947217305 0.257119157649534 0.275187810631033 0.258071264109906 0.245754618681373 0.245754618681373 0.254492667634895 0.250918628868277 0.256658813660898 0.245754618681373 0.251627745271569 0.247767739329419 0.245754618681373 1 1 - 8185230 8186248 8185866.727 8184941 8189053 - gene protein_coding_gene FALSE TRUE AT1G23090.1 AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G15990.1); similar to SULTR3,2 (SULFATE TRANSPORTER 3,2), sulfate transporter [Arabidopsis thaliana] (TAIR:AT4G02700.1); similar to SULTR3,1 (SULFATE TRANSPORTER 1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G51895.1); similar to plasma membrane sulphate transporter [Brassica oleracea var. acephala] (GB:CAG28416.1); similar to sulphate transporter protein [Sporobolus stapfianus] (GB:CAA65536.1); similar to Sulphate transporter [Medicago truncatula] (GB:ABE80289.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -1.75594004985854 -13.5998087612697 3.58914888530316e-08 0.0005582203261312 11.7920926261465 9.21779818376313 -1.75594004985854 0.165793140558345 AT1G78180_at 5.14040530220439 4.99012041016207 3.84600549673503 3.80898103194792 4.20969261424239 4.20485327526819 6.23241815937531 5.97512817294228 6.0416775674614 6.38982917314596 5.39140043999323 5.97528020158905 5.60331172364358 5.55623157011741 5.93113003825712 5.5985702767762 4.34638396553416 5.54588898946976 6.43751004649951 0.266054132943493 0.252123405637866 0.274150340941746 0.281418587630415 0.252673218465977 0.271821793570329 0.251491124153907 0.261528351842278 0.258882658111694 0.251722823804819 0.252057204935837 0.253602775558789 0.257923915849963 0.260565064552083 0.251491124153907 0.255668782179995 0.275998520167244 0.256412113591189 0.255802577172781 1 1|0 +|/ 29422602 29423231 29422991.8 29421806 29423533 + gene protein_coding_gene FALSE TRUE AT1G78180.1 binding similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G64970.1); similar to 80C09_21 [Brassica rapa subsp. pekinensis] (GB:AAZ41832.1); similar to Os03g0191100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049231.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -1.18164125915951 -13.5911770625735 3.61274902730133e-08 0.000561854728725903 11.7891299739838 10.6925490143805 -1.18164125915951 0.0519676891560299 AT3G09580_at 7.63307229843207 7.78527251779125 5.91071988385082 6.08495543876081 7.35725132455923 6.90723268536692 8.2247404360773 8.31055249636904 9.28639770855893 8.41604134837697 7.62937316135614 7.68393627801742 7.29284569577578 7.37101768045684 8.19740777754558 7.89062621619534 7.26450086767239 7.37688156170824 8.70688565040284 0.169179555435093 0.174758340204222 0.195473895217381 0.196779466595914 0.182999237407027 0.188837516112529 0.169028118685173 0.182978453751118 0.189182890612129 0.170763913018595 0.17135039256516 0.173901644725749 0.169028118685173 0.178070276056225 0.169028118685173 0.174907406155986 0.186849811848686 0.172570376376212 0.174917255567095 3 3 - 2942692 2943183 2942897.727 2942509 2944083 - gene protein_coding_gene FALSE TRUE AT3G09580.1 amine oxidase family protein similar to HEMG2/MEE61 (maternal effect embryo arrest 61), oxidoreductase/ protoporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT5G14220.1); similar to putative oxidoreductase, FAD-binding [Oryza sativa (japonica cultivar-group)] (GB:BAC07074.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -1.31907709248579 -13.5577744122462 3.70567808588771e-08 0.000576232942355539 11.7776298197862 15.4724405804612 -1.31907709248579 0.0888165732970663 AT4G24700_at 5.9330520124483 6.32641343346508 5.64877417772423 5.78887434824707 6.02074409589892 6.11780964053144 8.91577078530335 8.85836934496528 8.01637606491716 8.46956338765344 7.65286571722556 7.59092644106587 7.5392116939358 7.4670373231708 6.85478799854862 8.59246258234113 7.56722717259657 6.98522850520557 8.76973814014589 0.241510215942305 0.243372897684491 0.257229846137819 0.266266195388260 0.247700328570994 0.268543399631584 0.244951324657737 0.24661517291571 0.259199112579001 0.247347668231162 0.242722897929396 0.238454592409263 0.24399630431051 0.240535932809834 0.261230814951118 0.238454592409263 0.261288401059941 0.249535376774562 0.254734858418837 4 4 - 12744826 12745154 12744975.182 12744632 12745323 - gene protein_coding_gene FALSE TRUE AT4G24700.1 similar to Os02g0595200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047311.1) -1.25084579837800 -13.4681404713609 3.96813690877903e-08 0.000616886563838788 11.7464897797702 14.6761147932397 -1.25084579837800 0.0748504754680812 AT4G34250_at 4.25766926485441 4.80938394124717 1.13874816025489 1.15073544023271 1.64473728298482 2.25157276297596 3.44795516678368 3.72232502189651 2.42919589000331 2.29126682433521 1.79492554676304 2.09425199775678 1.82368760836201 1.97494255842435 2.38417079168947 1.80813800406332 1.669005959691 1.79437459645437 3.28963305448059 0.254976426347076 0.245612159624374 0.229066429908154 0.233824257803113 0.230033005045916 0.233146079319619 0.242816599560176 0.240639746071663 0.232307339653651 0.230006183268505 0.238893174803531 0.224124675570919 0.227813779983557 0.224333758802695 0.227009559351923 0.224124675570919 0.231053312380152 0.229307401781760 0.224916546772725 4 4 + 16395651 16396158 16395886.182 16394712 16396497 + gene protein_coding_gene FALSE TRUE AT4G34250.1 fatty acid elongase, putative Identical to 3-ketoacyl-CoA synthase 16 precursor (EC 2.3.1.-) (KCS-16) (Very-long- chain fatty acid condensing enzyme 16) (VLCFA condensing enzyme 16) (KCS16) [Arabidopsis Thaliana] (GB:Q9SYZ0); similar to FAE1 (FATTY ACID ELONGATION1), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G34520.1); similar to fatty acid elongase, putative [Arabidopsis thaliana] (TAIR:AT2G15090.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to beta-ketoacyl-CoA synthase [Brassica napus] (GB:AAK64213.1); similar to beta-ketoacyl-CoA synthase [Isatis tinctoria] (GB:AAX58615.1); similar to 3-ketoacyl-CoA synthase [Physaria fendleri] (GB:AAU05611.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -1.63248986356125 -13.4182635117248 4.12287962033649e-08 0.000640860408185104 11.7289833235067 5.09687540807389 -1.63248986356125 0.149675867730788 AT4G01460_at 6.28407101795878 7.18591150954952 2.9117373398041 3.53043621391894 5.23547733340778 4.81262203363804 6.95703842857777 7.25381220635393 7.05678544861389 6.84192995182385 6.39743040128207 7.88241578881578 5.87725126286501 5.61452103847437 6.89118007847945 6.15968672028656 4.13028616531399 5.55169798586592 8.020017978397 0.233037793280101 0.233668707385727 0.24962160084609 0.237866449427939 0.230199140747491 0.235580878042269 0.230199140747491 0.235367747530316 0.247157993682158 0.234891046827324 0.233744117083102 0.23622965202657 0.230199140747491 0.236393923552344 0.232336176310746 0.230199140747491 0.246737160683458 0.237499035886972 0.230199140747491 4 4|0 +|/ 621717 622632 622147.7 620759 622943 + gene protein_coding_gene FALSE TRUE AT4G01460.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G61950.1); similar to Os10g0376900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064473.1); similar to helix-loop-helix DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19748.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -2.02041291992824 -13.4181449732027 4.12325510607114e-08 0.000640877541136637 11.7289415640321 12.2060398302933 -2.02041291992824 0.209316454883625 AT3G63200_at 4.28743540484176 4.1602632810201 2.05165491982949 2.08373848313411 2.36973663829269 2.49122013785217 6.89932401363372 7.18757641861816 5.29822494489544 6.48593517800987 7.41787990673905 8.42194517386584 6.98927879308979 7.14768731262792 7.71510623357394 5.6797804935832 5.24251923556541 6.42218164132294 5.78673510498404 0.256717100338033 0.262265702252463 0.273167386309865 0.273483757011729 0.276018612517669 0.276035390045143 0.257566358910707 0.266306164230428 0.261452821259526 0.256717100338033 0.264029760307559 0.268009027592551 0.258134190742221 0.256717100338033 0.266015705992590 0.256717100338033 0.256717100338033 0.256717100338033 0.256717100338033 3 3 + 23357678 23358313 23357986.182 23356877 23358539 + gene protein_coding_gene FALSE TRUE AT3G63200.1 PLA IIIB/PLP9 (Patatin-like protein 9); nutrient reservoir similar to PLA IIB/PLP6 (Patatin-like protein 6), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT2G39220.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) -1.18098998095921 -13.3441427204321 4.36508471344206e-08 0.000678290513621762 11.7027286744208 10.3096248745323 -1.18098998095921 0.0586983955140735 AT1G69200_at 4.5882929874556 4.89696458273027 3.85743006790266 3.60275614010691 3.78136751743526 3.56603053729184 5.18392738340164 5.34160621081023 3.99353010681285 4.12426579254159 2.80014897234784 2.90710117420044 2.70796241092728 2.21130466812602 3.60423308621889 3.65245278858876 3.77982954977083 2.90682001808611 4.82536472393385 0.224249878480142 0.223549663306461 0.223203251600743 0.227704620093461 0.216534390217512 0.221609006416615 0.230732062228437 0.221877714507764 0.223504215239719 0.225353004527077 0.232269481871859 0.227629851342361 0.219806614648243 0.230761097188333 0.216534390217512 0.216534390217512 0.220848947428427 0.222162968201921 0.216534390217512 1 1|0 +|/ 26021346 26021906 26021578.8 26019687 26022156 + gene protein_coding_gene FALSE TRUE AT1G69200.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G54090.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT81682.1); contains InterPro domain PfkB; (InterPro:IPR011611) -1.27197850815571 -13.3242454137344 4.43270594464254e-08 0.000688665195559665 11.6956317480282 8.04510615737315 -1.27197850815571 0.0832408386925125 AT1G30520_at 6.97454186341517 6.82429103025578 5.60954972760206 5.35340962993066 6.06513851637159 6.20211146988274 7.66138866725985 7.49767011941188 8.93739258697582 8.37312353575444 7.82343945158165 8.35843781780372 6.75597244558503 7.47502388398534 8.63260604134265 7.49752350835749 6.70358703703156 7.33497412204452 8.25257011656563 0.185296866282138 0.175205771857561 0.181917696920716 0.179170897918513 0.190182514181673 0.180047642216647 0.176776513191471 0.180935892893938 0.174860171278863 0.180090958589540 0.176527412765218 0.177981884958662 0.181295350181043 0.183704074361755 0.174946089429104 0.174860171278863 0.177643957824459 0.174860171278863 0.179802550534196 1 1 + 10812769 10813503 10813094.545 10810966 10813613 + gene protein_coding_gene FALSE TRUE AT1G30520.1 acyl-activating enzyme 14 (AAE14) similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT4G19010.1); similar to Acyl-CoA synthetase (ISS) [Ostreococcus tauri] (GB:CAL50517.1); similar to Os08g0130400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060922.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -1.19012689605219 -13.2740812272598 4.60829635773377e-08 0.00071576059028321 11.6776464293909 14.5703747704654 -1.19012689605219 0.0632889121315438 AT2G34300_at 4.84106252038342 5.04613380381078 3.26015586756993 3.04946823695079 3.07304498841879 3.5825521550806 6.17677118424607 6.1271930616474 6.82242045623105 6.64398048104042 6.8860866931033 7.07534473402876 5.7579946978046 6.74646411159523 6.80163587262465 6.07910806791891 4.69085594867052 6.62106355313894 6.70814552684281 0.220885267766233 0.215536481034511 0.218726381312407 0.223249817084215 0.223467338202191 0.218670967087 0.217638663973983 0.215049456199505 0.228544933727570 0.212021931314603 0.212054249644197 0.215381963596168 0.216768378997594 0.220630568081543 0.216554697203696 0.212021931314603 0.224468178307906 0.213576829515895 0.214039113093137 2 2 - 14480998 14481669 14481317.818 14480744 14484509 - gene protein_coding_gene FALSE TRUE AT2G34300.1|AT2G34300.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G51070.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G29470.2); similar to dehydration-responsive protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96619.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22395.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.34950722101385 -13.2312489360925 4.76421230747059e-08 0.000739834529227107 11.6621838517411 10.9231317428795 -1.34950722101385 0.102160758468118 AT2G36050_at 4.421355312604 4.40297136451846 1.75952944961165 2.34428234618422 2.60478484965356 2.57298622415769 2.85805532621156 2.59066116123137 6.94479257842801 4.25368214827539 5.53727269354698 4.20393155651483 3.01019882179185 3.78524685114184 3.91467515840068 3.49095678261163 2.23177384722303 4.27839174059555 4.80291750174034 0.283498461636461 0.277198362904675 0.269776074937745 0.274562070500352 0.280998159220216 0.272851110985674 0.268711397431696 0.277378569859412 0.303237360971483 0.268711397431696 0.278454788141105 0.269510074195208 0.273661797211276 0.268711397431696 0.269270293378646 0.271556929442355 0.283245617475466 0.268711397431696 0.270067747594751 2 2 - 15142962 15143377 15143205.545 15142651 15143828 - gene protein_coding_gene FALSE TRUE AT2G36050.1 ATOFP15/OFP15 (Arabidopsis thaliana ovate family protein 15) similar to ATOFP18/OFP18 (Arabidopsis thaliana ovate family protein 18) [Arabidopsis thaliana] (TAIR:AT3G52540.1); similar to H0913C04.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86167.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) -1.38755327587126 -13.1508281241578 5.07266873659282e-08 0.0007875825480434 11.6328853356378 7.51450492475133 -1.38755327587126 0.111453748160325 AT2G45470_at 7.40986110661013 8.03121502488739 3.26220818497912 3.23848491585202 4.20773995985814 4.51537847173425 8.11516324745913 8.44796145124454 8.03186919530525 8.28510138002297 9.98123207699634 10.3268758929010 9.21210243067927 9.43384357222761 10.3538621325747 9.14442710793312 7.39972976787266 9.188184953975 8.25425546474476 0.188985392217788 0.192699867281444 0.216042904860091 0.202774604392925 0.199034060129245 0.223165412303731 0.177913294836711 0.185018769542823 0.190433016980424 0.18278177154852 0.178304209678510 0.183568242045024 0.179187171152631 0.191475117410526 0.183822261822077 0.177913294836711 0.200554998019002 0.177971916434410 0.184401727619902 2 2 - 18749979 18750374 18750172.909 18749614 18751185 - gene protein_coding_gene FALSE TRUE AT2G45470.1 FLA8 (Arabinogalactan protein 8) Identical to Fasciclin-like arabinogalactan protein 8 precursor (AtAGP8) (FLA8) [Arabidopsis Thaliana] (GB:O22126;GB:Q56ZW9;GB:Q8L9B1;GB:Q9FR46); similar to FLA10 (fasciclin-like arabinogalactan-protein 10) [Arabidopsis thaliana] (TAIR:AT3G60900.1); similar to fasciclin-like protein FLA5 [Triticum aestivum] (GB:ABI95395.1); similar to Os04g0574200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053617.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.50273688128689 -13.1375327706702 5.1257223208251e-08 0.00079571713308489 11.6280078824939 14.6887220062877 -1.50273688128689 0.133155368332178 AT1G51270_at 5.61535943862754 5.33144074114202 4.17170576789421 3.86580273859993 3.72077334793375 3.65009015432399 5.84779854779261 4.77529584191266 4.76558827403388 5.28612552414667 3.10390808167533 2.47680617428346 3.27684108072358 2.81111445533255 2.58565168420081 3.24849343972731 3.42915048164271 2.53798387490338 5.60582429406246 0.184837469048332 0.183600779035034 0.184608694959247 0.181973371815128 0.181111735403018 0.184827212063143 0.190119026241651 0.184102546452866 0.183521190537705 0.200553562287012 0.180774156570961 0.182292977746935 0.182078847422555 0.180435642811673 0.182145163476051 0.182093009491933 0.181924702516061 0.191800217504862 0.197655866330589 1 1|0 +|/ 19012189 19013973 19013276 19011656 19014379 + gene protein_coding_gene FALSE TRUE AT1G51270.1|AT1G51270.2 structural molecule| similar to vesicle-associated membrane protein, putative / VAMP, putative [Arabidopsis thaliana] (TAIR:AT2G45140.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Major sperm protein; (InterPro:IPR000535)|similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G45000.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Major sperm protein; (InterPro:IPR000535) -1.9129081726003 -13.1372520422296 5.12684901533012e-08 0.000795840772649694 11.6279047923299 8.69874483384941 -1.9129081726003 0.199534703331235 AT1G70985_at 3.39946704627672 3.40870760705892 3.19560628539192 3.40931281351524 2.74221417109899 3.08253207997308 6.46913802432775 6.87729807536698 4.55390026878207 5.29142118570641 4.04251298509242 4.29783352634545 5.1869946607289 4.60681181074516 3.50617787199846 4.79463025623838 5.61473595547756 4.01500287549923 5.76371877983156 0.267179964361017 0.258550185834476 0.262739339778461 0.263487614003954 0.258581924756119 0.26408771582156 0.300789953114662 0.293712716458881 0.27095463717314 0.262151357565332 0.258550185834476 0.258550185834476 0.260231135090839 0.262369868561981 0.261293186337926 0.259573774293191 0.268922020648843 0.259897199010005 0.272004790323911 1 1 - 26768449 26768812 26768632.545 26768334 26768947 - gene protein_coding_gene FALSE TRUE AT1G70985.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G23050.1); similar to Os01g0112000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041810.1); similar to OJ1116_C07.3 [Oryza sativa (japonica cultivar-group)] (GB:BAC00686.1); similar to Os09g0332100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062903.1) -1.31308113471855 -13.0148940879846 5.64453654644795e-08 0.000875862735912329 11.5825599596192 8.92858496497905 -1.31308113471855 0.0991358220585357 AT3G16660_at 9.6020008611594 9.87358921055506 6.63629353444025 6.76431791089439 8.13516354656569 7.68765029889835 8.4846068307346 8.89645891322664 8.90722305668959 7.71779120133742 6.92749843203216 7.90413704558208 7.20618798259946 7.73067081718095 8.32795099222886 6.41433984119907 7.36604938209827 7.43367887260255 8.27884684382203 0.268215518213849 0.262079463603444 0.268556561087703 0.250393369643876 0.267558715090177 0.271554537921646 0.280708843733976 0.261726256188227 0.268183871581420 0.260556706280649 0.250393369643876 0.250393369643876 0.250393369643876 0.261081039674321 0.250393369643876 0.26539066326081 0.250393369643876 0.265587985413005 0.250393369643876 3 3 + 5676929 5677103 5677024.143 5676835 5677921 + gene protein_coding_gene FALSE TRUE AT3G16660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16670.1); similar to phylloplanin [Nicotiana tabacum] (GB:ABE03627.1) -1.39789024723926 -12.9619219974314 5.8860434716587e-08 0.000913219644627847 11.5626712344937 16.1175607406293 -1.39789024723926 0.117376577993747 AT2G30150_at 5.48237553774139 5.98786591239016 3.74418093634739 3.92030719346257 4.33282786969205 4.05754270738519 6.97555231013552 7.55805389892016 5.44768476351625 6.9146012798031 6.03427062127353 6.3041584465179 5.9079580675439 5.91444962944651 6.30209328093239 6.45772542447378 4.98793105634005 4.95043964964417 6.9403611864149 0.217520862954888 0.214936863442537 0.215838783126903 0.214678937053131 0.21540691767614 0.220009056935635 0.228614675783533 0.227653486627748 0.217521765566762 0.218156836896418 0.215747407518188 0.21710269894771 0.215109047039249 0.216457888757693 0.219079293785635 0.215446056374368 0.219447441953806 0.220906304083774 0.217957744613898 2 2 + 12882666 12883152 12882955.455 12881783 12883199 + gene protein_coding_gene FALSE TRUE AT2G30150.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30140.1); similar to Os01g0805400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044560.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); similar to Os05g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055920.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.53204235464911 -12.8158677505883 6.61203505041167e-08 0.00102552663631885 11.5070121106617 11.4031353033924 -1.53204235464911 0.144956499280777 AT3G55120_at 4.81870199595159 5.18941771129931 3.66725959281191 3.53486969794829 3.66839879358647 4.16389475364677 6.8222933135766 6.98426591938276 4.99649490250551 5.90271206869571 4.91165798827588 4.86947615873647 4.59540594045678 4.67050881919538 4.55056804353843 3.99186162841984 5.18895256374416 4.79646560622186 4.67741181478667 0.269070488523763 0.266926540732661 0.272818619222174 0.27453642667764 0.262525821740915 0.262525821740915 0.275509349439266 0.272355666444419 0.267305054002502 0.269242112825326 0.262525821740915 0.267760307140574 0.266836668105134 0.271279057696940 0.263896969396175 0.262525821740915 0.268250951083831 0.262525821740915 0.262525821740915 3 3|0 -|/ 20441326 20442121 20441762.667 20441091 20442447 - gene protein_coding_gene FALSE TRUE AT3G55120.1 TT5 (TRANSPARENT TESTA 5); chalcone isomerase Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Identical to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase) (TRANSPARENT TESTA 5 protein) (CHI) [Arabidopsis Thaliana] (GB:P41088;GB:Q8W532;GB:Q9LE13;GB:Q9LF74;GB:Q9LF75); similar to chalcone isomerase [Arabidopsis thaliana] (TAIR:AT5G66220.1); similar to Chalcone--flavonone isomerase (Chalcone isomerase) (GB:O22651); contains InterPro domain Chalcone-flavanone isomerase; (InterPro:IPR003466) -1.34520409698828 -12.6749441423641 7.40556412708275e-08 0.00114771432841528 11.4521411730628 9.80067190006024 -1.34520409698828 0.113044387361574 AT1G23140_at 7.36497127746583 7.48841724098084 5.598382740432 5.9643714867114 6.17959297655704 5.68492999063379 6.2263540966779 5.79637616252728 5.91025665044344 5.64312999992233 3.42668708319267 3.53757912830115 4.07133484915240 3.76646344113371 2.72433413680201 3.60373931911055 3.97158113051382 3.59603590518884 5.19641762742159 0.242003674533235 0.256862047959810 0.243680018274327 0.258427886828409 0.247178328833155 0.254365332696318 0.246907014762757 0.248870088526177 0.261242862496366 0.25717262852177 0.244728273267757 0.245491494659198 0.249045526634401 0.250653544423539 0.253182104589083 0.244042466149060 0.255315430946839 0.242003674533235 0.245953536799082 1 1 - 8202360 8203132 8202758.364 8202250 8203204 - gene protein_coding_gene FALSE TRUE AT1G23140.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70810.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -1.4291295571254 -12.5644253279243 8.10029036364208e-08 0.00125513999184634 11.4082878147688 10.8731682298834 -1.4291295571254 0.131653450953493 AT2G46830_at 8.84687726158981 8.89584368396 8.4410582698701 8.61230926553668 8.7929103818504 8.63900600654938 11.0343121323706 10.9464436854735 10.8223101065335 10.7755765521629 9.78732612026596 9.85629889201495 10.0945150543115 10.0951905036133 9.23183852670394 10.7263369354112 10.4063888875811 9.87417858397695 10.9221800657152 0.0930768951351176 0.0901452232095899 0.100285580779612 0.0924355829166995 0.0873115547566062 0.0953289295623914 0.0875711380530044 0.0877211691933198 0.0904787911069474 0.0873014315753382 0.0855038829530511 0.0876817734697402 0.0855038829530511 0.0900615803177937 0.0907083722853324 0.0859722469535864 0.086268465483138 0.087834221213446 0.0855038829530511 2 2|0 +|/ 19255138 19255711 19255375 19252746 19255983 + gene protein_coding_gene FALSE TRUE AT2G46830.1|AT2G46830.2 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); transcription factor encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of ARABIDOPSIS. similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1) -1.07028063169126 -12.5601769601694 8.12837189022676e-08 0.00125940994067173 11.4065874565708 19.7006108006278 -1.07028063169126 0.0434818688098222 AT3G49160_at 3.16541478745356 3.42519089564717 2.776172579723 3.14363935769421 1.48816393581929 1.56163058791653 4.25866175960885 4.26815203104462 2.93259005306667 2.79363572723521 2.77828370810906 1.94417027383586 1.84527408158505 1.89735284032823 2.08496800854610 2.22842563757426 2.20149676190180 2.89977794484816 3.42602237885949 0.232953684925878 0.222845829492033 0.222845829492033 0.226974212500565 0.222845829492033 0.225150941161877 0.230462154054811 0.243382592447913 0.243800854545256 0.230668352841231 0.227728484881696 0.227904587062582 0.223098952003234 0.222845829492033 0.233563603214392 0.222845829492033 0.232958764240362 0.224957995884611 0.229929744112832 3 3|0 -|/ 18233118 18233748 18233481.5 18232979 18235870 - gene protein_coding_gene FALSE TRUE AT3G49160.1 pyruvate kinase family protein similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase family protein [Marinobacter aquaeolei VT8] (GB:ZP_00817592.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -1.17636699122317 -12.5003862071107 8.53500659327535e-08 0.00132215787136428 11.3825408739318 5.6537372636025 -1.17636699122317 0.0789256151239632 AT3G30775_at 5.33619034752402 5.58205080425951 3.9424237308462 3.91853294699338 5.27073642271071 5.19810432505049 6.06615449922078 6.23228884493424 6.0314764314466 3.79899750600294 3.54618747176347 4.14676166697008 3.3389559759152 3.37857769298128 4.09598541196143 4.68573384990067 3.86736354780595 3.59358499135115 4.52146564780408 0.257574861027541 0.257574861027541 0.262323853384210 0.264711911954702 0.263676300451503 0.276802630360201 0.260433154627679 0.257803209433779 0.271632615104939 0.257574861027541 0.25920193122956 0.258388042556934 0.262650661538029 0.259041690820402 0.272648160490124 0.257958867584346 0.264581726352949 0.270638603524094 0.263133245057054 3 3|0 -|/ 12451492 12452107 12451839.4 12451115 12453727 - gene protein_coding_gene FALSE TRUE AT3G30775.1 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. Identical to Proline oxidase, mitochondrial precursor (EC 1.5.99.8) (Osmotic stress-induced proline dehydrogenase) (POX) [Arabidopsis Thaliana] (GB:P92983;GB:P92945;GB:Q96281); similar to proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G38710.1); similar to proline dehydrogenase [Glycine max] (GB:AAR86686.1); contains InterPro domain Proline dehydrogenase; (InterPro:IPR002872) -1.08702890162725 -12.4692509225415 8.75546118743263e-08 0.00135622093793331 11.3699326253532 9.5011220841086 -1.08702890162725 0.0530276811070184 AT1G80050_at 7.30129194850853 7.04599497887093 4.29680457638287 4.37857861838077 5.906211161731 6.28098433099255 7.13470861065374 7.13665082320146 7.06233161449423 7.75812963698257 6.97729585911101 8.403051121587 6.53422997774129 6.14769841849181 7.8902414566143 7.92724534525517 6.14936072511873 7.02374203226853 7.78735664973298 0.227559776468171 0.225307190377146 0.254392316635776 0.257944611684983 0.231231844670002 0.239975161679941 0.226373191337907 0.224791245082922 0.232988889043748 0.239901724283583 0.229286992217053 0.244343867245274 0.2261734276267 0.240042099695345 0.237399476236697 0.233927527521188 0.259785132520442 0.233443221156299 0.256723604838254 1 0|1 /|- 30116632 30117904 30117254.333 30116407 30118217 - gene protein_coding_gene FALSE TRUE AT1G80050.1 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. Identical to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT 2) (APT2) [Arabidopsis Thaliana] (GB:Q42563;GB:Q39004); similar to APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G11160.1); similar to Os04g0504000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053244.1); similar to Os02g0613900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047421.1); similar to putative adenine phosphoribosyltransferase form 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD19719.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -1.17167405090832 -12.4172252811752 9.13775539964097e-08 0.00141534693385039 11.3487318133600 13.5189268398036 -1.17167405090832 0.0797408845405297 AT2G30010_at 5.65263836024408 6.12417466178945 2.44226855002694 2.58791064159446 3.14204059202600 3.01023617507376 3.99087791102844 4.41733420922132 7.15720839115285 6.46090908381225 7.63613987059498 7.9411544520421 6.46957655058861 6.71668696976521 7.84489444630943 7.49112777391418 3.53075413246826 6.18219105927438 7.7732285179547 0.316367789537539 0.316367789537539 0.362952921315925 0.344057832882239 0.334160916862586 0.330435937556225 0.317891136896681 0.325959007043312 0.32409996842074 0.316367789537539 0.316367789537539 0.316367789537539 0.31668241793948 0.319386934664752 0.316367789537539 0.316367789537539 0.33904627246575 0.316367789537539 0.316367789537539 2 2 + 12814749 12816254 12815591.364 12812801 12816463 + gene protein_coding_gene FALSE TRUE AT2G30010.1 similar to PMR5 (POWDERY MILDEW RESISTANT 5) [Arabidopsis thaliana] (TAIR:AT5G58600.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); similar to Os03g0290900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049797.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.32726265166374 -12.4087222786470 9.20194281966005e-08 0.00142519690390895 11.3452508720097 10.8494422982137 -1.32726265166374 0.115155556394780 AT4G37190_at 6.18821552636506 6.37458941485313 4.47324646911594 4.64636054225441 5.04027996791358 5.32360988632635 5.89031665328792 5.89274980705458 3.08258649437212 4.48669396639855 2.13912712448168 2.38299694497068 2.99867821129731 2.39001663852216 2.74505771903876 2.99250648686714 3.55381246559659 3.04348084257921 3.8260851721392 0.235432445809905 0.226853097712061 0.230735799927690 0.236110582032318 0.228626537744322 0.239670640816504 0.238510857758105 0.237051225827165 0.226853097712061 0.23468715970921 0.231357804044657 0.231914969670076 0.226853097712061 0.241407175917711 0.22866445192309 0.230508730558880 0.243516700939647 0.230428821868206 0.233028660011218 4 4 + 17508910 17509471 17509180.545 17507044 17509741 + gene protein_coding_gene FALSE TRUE AT4G37190.1|AT4G37190.2 similar to Os03g0240900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049512.1); similar to Os12g0586400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067157.1); similar to tubulin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC84426.1)|similar to Os03g0240900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049512.1); similar to Os12g0586400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067157.1); similar to tubulin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC84426.1); contains domain FAMILY NOT NAMED (PTHR13391); contains domain Tubulin/Dihydroxyacetone kinase nucleotide-binding domain (SSF52490); contains domain gb def: Tubulin-like protein (PTHR13391:SF4) -1.11666964539418 -12.3600308168734 9.57906398825325e-08 0.00148331805858102 11.3252310217271 8.76825341596594 -1.11666964539418 0.0658939513109624 AT4G25100_at 11.8629879330831 11.9504330727010 11.1311118881557 11.1435825016195 11.1050174481880 11.1817084646165 12.7852961378684 12.9843059833402 12.5097533284049 12.6542786020662 11.2273932381746 12.0044222907478 12.0687291574543 11.6372952629941 9.43685728063295 11.6397573056278 12.2013779335354 11.8353586052090 11.8596121881683 0.0766577561029613 0.075404832816657 0.0754700628589142 0.0769270654217318 0.0754855076689146 0.0795953504102223 0.0761353766185659 0.0770784451283419 0.082796086108669 0.0766583613506933 0.0774230266116883 0.0760875861859644 0.0765615601233328 0.0779555740997201 0.0861130697572772 0.0753017383277127 0.0765631004464494 0.0783302668438094 0.0753017383277127 4 0|4 /|- 12884677 12885605 12885283 12884310 12886831 - gene protein_coding_gene FALSE TRUE AT4G25100.1|AT4G25100.2|AT4G25100.3|AT4G25100.4 FSD1 (FE SUPEROXIDE DISMUTASE 1); iron superoxide dismutase Fe-superoxide dismutase Identical to Superoxide dismutase [Fe], chloroplast precursor (EC 1.15.1.1) (SODB) [Arabidopsis Thaliana] (GB:P21276;GB:Q9FE21;GB:Q9SW16); similar to FSD2 (FE SUPEROXIDE DISMUTASE 2), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT5G51100.1); similar to Fe-superoxide dismutase (GB:AAA32791.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -1.0451082640097 -12.3573282532874 9.6004817127918e-08 0.00148653858840868 11.3241155062695 23.6918622239516 -1.0451082640097 0.0399484984608692 AT3G06770_at 4.58957012217591 5.21398314243638 3.32721190835525 2.81414500387417 3.39064078941312 3.56209663011845 6.91241128511308 6.98865388803737 7.70203593248025 7.2821118935509 8.6313172666123 8.2878178218012 7.41447717776302 8.05582238834536 8.63441137385202 6.732932023541 5.17281342790168 7.13279169264275 8.34859525135073 0.266900145689675 0.260373839268389 0.271960895329906 0.276683037590642 0.271264325447474 0.268915040667519 0.262259477815128 0.263031482399701 0.268040140127494 0.26078528162744 0.268609509006864 0.260286069235399 0.268443621237364 0.263157208756322 0.271079956402808 0.265577139905746 0.276736058996839 0.261834576328249 0.260225325018322 3 3 - 2135172 2135692 2135427.818 2134806 2137234 - gene protein_coding_gene FALSE TRUE AT3G06770.1|AT3G06770.2|AT3G06770.3 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Arabidopsis thaliana] (TAIR:AT5G49215.2); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334)|similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G49215.1); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.46120707786849 -12.2863815638582 1.01817542128417e-07 0.0015761355521479 11.2946670731761 12.2425285573662 -1.46120707786849 0.143576907053620 AT4G31590_at 3.70167356106221 4.07028088498077 1.97531279862068 1.95670067266431 2.76841931241026 2.59728756745038 6.02842098198236 6.142407869366 3.80484065736092 5.34938621519602 5.84589569213002 6.89097800012918 5.24090522456279 5.06609031224215 6.15332910287604 5.34742821318234 3.70003167946595 4.91385316135095 5.84562539535788 0.256162519785676 0.254181226835693 0.268284565190913 0.266008636209283 0.254181226835693 0.262148944781113 0.257185295940655 0.264637252540315 0.258026166324881 0.263778244350842 0.258114790844966 0.258399146052885 0.256810906728094 0.259656494508091 0.259015302337076 0.254181226835693 0.26823111140132 0.262242374729755 0.261855252937975 4 4 - 15309948 15310438 15310246.273 15309512 15312597 - gene protein_coding_gene FALSE TRUE AT4G31590.1 ATCSLC05 (Cellulose synthase-like C5); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC04 (Cellulose synthase-like C4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G28180.1); similar to putative glucosyltransferase [Cicer arietinum] (GB:CAB88664.1); similar to TPA: TPA_exp: cellulose synthase-like C3 [Oryza sativa (japonica cultivar-group)] (GB:DAA01751.1); similar to TPA: TPA_exp: cellulose synthase-like C2 [Oryza sativa (indica cultivar-group)] (GB:DAA01750.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.13320128464530 -12.2688054482954 1.03315909580251e-07 0.00159912364848313 11.2873224070227 8.85244529567414 -1.13320128464530 0.0731136713756039 AT3G15400_at 3.19558942656399 3.28873829749023 2.52296816074502 2.17702082209159 2.26607566119325 2.15650847788728 3.91273624934642 4.88213118366189 3.50762353798510 4.77068433583944 2.68562500342572 2.52113203684274 2.49826803656049 2.50809272933807 2.28604878304252 2.12964599236914 2.57110191928398 2.21368774448163 4.35326188960261 0.214391661806865 0.209825301305466 0.211201568500577 0.212724917297622 0.214017223671047 0.209825301305466 0.216915910033591 0.220595999734268 0.219733959295031 0.227971193996705 0.215789822324150 0.212166567852126 0.211049386246034 0.224519552702838 0.21239454674766 0.214069086879111 0.220028926024766 0.212407296488516 0.223318410933460 3 3 + 5202535 5202907 5202733.182 5201651 5203204 + gene protein_coding_gene FALSE TRUE AT3G15400.1|AT3G15400.2 ATA20 (Arabidopsis thaliana anther 20) Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Os05g0226800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054964.1); similar to ovarian fibroin-like substance-1 [Cyprinus carpio] (GB:AAG25716.1) -1.66148924129701 -12.2297614633158 1.06730801103088e-07 0.00165176587787139 11.2709363563067 6.36883280244434 -1.66148924129701 0.179850990590697 AT1G48570_at 6.63453805665542 6.73999853091554 6.09253730752031 5.81328280780445 4.95126679048738 4.89242222480127 7.11832671470187 6.75773429958438 4.65836427342527 5.37692389255785 3.89223129556184 3.96538491809658 3.66338611175236 3.71232248088638 4.19282760401239 4.46901106809005 4.73961964278361 4.36698290080844 5.15766146500956 0.250807905089328 0.248737072476651 0.245826482416751 0.246097534448813 0.245826482416751 0.245826482416751 0.264729708832291 0.255723151126396 0.2581199980377 0.250319995038428 0.250372178128624 0.245826482416751 0.246804082618121 0.24669588181256 0.248597861930957 0.245826482416751 0.249672449596944 0.246545824781107 0.249370440574401 1 1|0 -|/ 17959127 17960357 17959793.444 17958946 17961387 - gene protein_coding_gene FALSE TRUE AT1G48570.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G70650.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE26599.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -1.15718395436311 -12.1865118033734 1.10657209494793e-07 0.00171219900251293 11.2526711719877 10.7197819897654 -1.15718395436311 0.0816470656738313 AT3G12610_at 7.22692068465374 7.8234753550959 3.54176765664347 3.60534481092580 6.24498455298851 6.25491240179004 7.89279037882412 8.08688980236647 7.58972549139599 7.54463525224499 8.77901404617336 8.91113561015958 8.24976665423373 8.12777742628307 9.157847464723 7.8890234714161 6.11807303770552 7.95516752251121 8.42141275375608 0.197707637435093 0.198421390832853 0.227603032986361 0.213066269240046 0.206981584479455 0.216053986607546 0.197707637435093 0.207945504186052 0.223154851750595 0.204149873513528 0.198531465481634 0.200622708904147 0.197707637435093 0.197943954418979 0.213229081133203 0.206464348690611 0.215735918071898 0.203188270657507 0.200178269354747 3 3 - 4006715 4007231 4006966.727 4006406 4007814 - gene protein_coding_gene FALSE TRUE AT3G12610.1 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;GB:Q9LHK0); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G20820.1); similar to leucine rich repeat protein [Cicer arietinum] (GB:CAE76632.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.27460777231488 -12.1837708359791 1.10911278709583e-07 0.00171601930419466 11.2515095460750 14.3348357820525 -1.27460777231488 0.109133254202961 AT4G22560_at 3.56244555664228 3.43260194441988 2.53757784297722 2.85598165040805 2.56507933147641 2.47218742635097 4.14871230434000 4.55671744703064 4.38288277177165 4.80155743066664 3.94945221448862 5.06503841846017 3.78674905166061 3.61980977450267 4.65697431916954 3.43931984985402 2.77410921081058 3.36706353925388 5.58542360074288 0.263592449553397 0.272588885999712 0.269102085567292 0.261083480028644 0.264037987386255 0.27344035604301 0.273445550687883 0.268690622842928 0.273831076906013 0.26858445853841 0.277499757543114 0.264271168488788 0.267470393466771 0.262086644895066 0.261083480028644 0.261083480028644 0.266802003600552 0.263713350870353 0.288494884946167 4 4 + 11880423 11880926 11880681.455 11880130 11881083 + gene protein_coding_gene FALSE TRUE AT4G22560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G12450.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25627.1); contains domain ADP-ribosylation (SSF56399) -1.20419306871188 -12.1669911735572 1.12480513863984e-07 0.00174007354947583 11.2443877085739 7.64421417879005 -1.20419306871188 0.0937275067918285 AT2G30420_at 5.31190330831412 6.03127143466467 2.99330992207578 2.98011574854536 3.83581494823430 3.78968226263967 5.96071594044243 6.05856132377919 5.24514868801816 5.69919838887216 5.48668104672357 6.01629412072077 6.21505649816747 6.01373840621005 4.73742777681669 5.65230348346594 4.35242094803886 4.48603130856828 5.94019123622636 0.304100000527957 0.295093057106842 0.296442642600576 0.301283694703042 0.29222120331302 0.309003496211649 0.29222120331302 0.29222120331302 0.310742004558349 0.297468521973754 0.293921986990112 0.29222120331302 0.298318513174739 0.29222120331302 0.29222120331302 0.302952402328723 0.306424143491833 0.30347612064476 0.299225522698995 2 2 - 12968060 12968968 12968589.75 12967961 12969239 - gene protein_coding_gene FALSE TRUE AT2G30420.1 myb family transcription factor similar to TRY (TRIPTYCHON), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G53200.1); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G30432.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.34953376027147 -12.1221254311974 1.16796006635858e-07 0.00180660063064346 11.2252554343948 10.1192586792342 -1.34953376027147 0.125910383848375 AT2G40300_at 6.55656783160109 6.37348613331707 5.5906682477811 5.48619329146287 3.17427565957818 3.64285071346817 6.46539092197417 6.82162330070254 3.59528662389429 3.63148034396837 3.78821763032149 3.10249314292067 3.11050873045787 2.7865770222059 3.13796205392025 2.91199807749632 3.19717138741225 3.77313789979197 3.76174631639389 0.284164175050979 0.297991512556927 0.291109085530576 0.288140704804007 0.281269483252465 0.295126748128655 0.292692525863384 0.289045286899946 0.289221640324903 0.283295655660151 0.282366165811349 0.281269483252465 0.292682301721727 0.292657897078260 0.300216062571892 0.281269483252465 0.285581130217712 0.282536718552856 0.282006402253502 2 2|0 -|/ 16838768 16840087 16839762.556 16838375 16840358 - gene protein_coding_gene FALSE TRUE AT2G40300.1 ATFER4 (FERRITIN 4); ferric iron binding Identical to Ferritin-4, chloroplast precursor (EC 1.16.3.1) (FER4) [Arabidopsis Thaliana] (GB:Q9S756;GB:Q8WHW5); similar to ATFER3 (FERRITIN 3), ferric iron binding [Arabidopsis thaliana] (TAIR:AT3G56090.1); similar to ferritin [Chorispora bungeana] (GB:ABB22752.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) -1.25879979358957 -12.0739978328754 1.21625963407634e-07 0.00188082389813565 11.2045859472707 8.958305014728 -1.25879979358957 0.1081969552911 AT3G46670_at 4.68706320067925 4.76639554754012 4.13197644891862 3.8927382980885 4.14376388287347 4.29430364310937 7.38419770099311 7.30143265275676 6.37316671206242 7.10635758306197 6.31651129973382 6.84933224883581 6.37850911774846 6.27242379081244 6.86757181166812 6.71506425089857 5.80697597978979 6.61758554946275 6.50175588837711 0.207758267968935 0.205864684462567 0.218821037649578 0.212059490339630 0.205041119811089 0.206827490093916 0.214774101715592 0.213283101594064 0.211852407659313 0.20768995778281 0.209083009848964 0.205763891112033 0.203569883397603 0.213383078478566 0.204907037865036 0.206834689639795 0.205838676091198 0.203569883397603 0.203569883397603 3 3 - 17203792 17204322 17204104.455 17203574 17205382 - gene protein_coding_gene FALSE TRUE AT3G46670.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46660.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.05075333947997 -12.0605929980306 1.23009539625388e-07 0.00190197350168775 11.1988018126141 11.6444456638462 -1.05075333947997 0.0527861508965054 AT2G40150_at 3.35014346722201 3.66828470219373 1.90800501309869 1.89955439960503 2.05767324116011 2.24477155994802 5.49989560449173 5.60153087764367 4.02093410511344 4.67362292811905 5.25250163414994 6.01625943558238 4.65713857865002 5.25116364282367 5.55228268555075 4.68054374355161 3.5524346699383 4.49764937892659 5.08258951532036 0.283291814511833 0.275351477280063 0.304604683130936 0.304513066950347 0.289960847506407 0.291489194984031 0.286023752278836 0.291401410400555 0.280225583676271 0.275351477280063 0.276361082811075 0.283375200754306 0.278131464861667 0.287617141895679 0.275351477280063 0.275351477280063 0.281032082772014 0.277438387013795 0.280533834571709 2 0|2 /|+ 16783703 16784155 16783965.5 16782520 16784321 + gene protein_coding_gene FALSE TRUE AT2G40150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55990.1); similar to Os03g0291800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049800.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95402.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.08117403556956 -11.9539662245914 1.34643352451133e-07 0.00208118229883716 11.1523676317493 8.04117181016917 -1.08117403556956 0.066264519455454 AT1G12010_at 2.89075605391559 3.36884804848064 2.14020496172563 2.18057542760862 2.24992290176251 2.69620334503109 4.59103618750116 4.43206859119652 3.3428065328851 4.13774831618648 2.80298055294925 2.82720103996540 2.83092388533719 2.33500381867212 2.44762839538739 2.81641250803964 2.91579057048197 2.73060571697033 3.82396971567693 0.243945716644151 0.234761054910286 0.236671410601742 0.238461225101982 0.232249464871601 0.239265553693862 0.255282705397996 0.253917257263992 0.23502031353767 0.240643492353256 0.236620118538488 0.244563200684744 0.240175395043697 0.237062621103768 0.246038045937666 0.231683933518944 0.241524174722193 0.231683933518944 0.238435606777639 1 1 + 4056989 4057638 4057310 4056205 4057931 + gene protein_coding_gene FALSE TRUE AT1G12010.1 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase similar to ACO2 (ACC OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT1G62380.1); similar to ACC oxidase [Brassica oleracea] (GB:CAA57285.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -1.27940355259114 -11.8937026534704 1.41742827037139e-07 0.00219035190620491 11.1257861452954 6.30944852259851 -1.27940355259114 0.116685392051229 AT2G43820_at 8.8565869948057 9.16368128394352 7.71110631526809 7.80652556755607 9.11618804452739 8.95317410880503 6.95055923947403 6.87021473509319 8.2036174133378 7.64012294316765 3.87422003008521 3.69005433948825 4.87200513489193 5.01707485084701 5.43110629891838 6.96129011421597 6.53477254258713 5.97620854611447 7.74183130123738 0.220853462089748 0.219747396051776 0.214472321016907 0.214741030156751 0.21912237372509 0.227556797572444 0.213991008220225 0.215074593125653 0.216103237058721 0.213306582692247 0.218055534708463 0.226064589739860 0.212888231952477 0.221923759028391 0.235104891985646 0.212730233566609 0.215540503123562 0.213544080543367 0.216184537195722 2 2 + 18160193 18160711 18160331.545 18159304 18160985 + gene protein_coding_gene FALSE TRUE AT2G43820.1 GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G43840.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.06538889569701 -11.8609705810065 1.45768370170176e-07 0.00225241285586956 11.1112450134132 14.7567288868797 -1.06538889569701 0.0639226820897445 AT3G22840_at 4.27359432274342 4.76803007854587 2.72748893357074 2.96630722799242 2.41923821547627 2.47407878980568 4.65246622775922 4.73177715217807 2.67612824862926 3.75600297807867 2.37911881836295 2.70897377979832 2.64934103007359 2.84062494437672 2.27334163954838 3.19516036603619 3.23808317823426 2.41039642206885 2.90957714681235 0.29824961119826 0.297607666149801 0.285756915064819 0.269627382035911 0.276773031143716 0.297903711723859 0.304771854618237 0.285018121472227 0.276571464789860 0.269627382035911 0.271239592559801 0.271547931896122 0.273156599308506 0.269627382035911 0.295605631803171 0.272346522381018 0.274934199548876 0.275397556839593 0.276982957881284 3 3 - 8084653 8085412 8084993.909 8084471 8085567 - gene protein_coding_gene FALSE TRUE AT3G22840.1 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding Encodes an early light-inducible protein. similar to ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT4G14690.1); similar to ELIP [Brassica rapa subsp. pekinensis] (GB:AAR11456.1); contains domain EARLY LIGHT-INDUCED PROTEIN (PTHR14154:SF1); contains domain UPF0041 BRAIN PROTEIN 44-RELATED (PTHR14154) -1.18085571122819 -11.8158171409631 1.51526572575140e-07 0.00234078249314077 11.0910652281523 6.53951402525188 -1.18085571122819 0.0964767886248376 AT4G32710_at 1.96843424447951 1.94159355389225 0.831609392279279 0.667495408244173 1.46746097470453 1.35463372347915 2.43095826131715 2.49082418907794 2.81216146517172 2.93455633957336 2.19884096411805 2.05688613411126 1.46224612658946 1.8850061529353 2.33278756225462 1.81542263525505 1.59108919030101 2.42582949171701 2.72713942574425 0.229517752106663 0.233517428254029 0.240192132396765 0.248232351577053 0.228123795433145 0.233269648225996 0.244074391931638 0.242307884087721 0.263753545187256 0.234304015900181 0.232504612785023 0.23201555413411 0.238956086743151 0.244192376486809 0.236827657444923 0.233233927217980 0.240969794807659 0.234936001800649 0.233083464854547 4 4|0 +|/ 15782232 15783201 15782694.889 15781051 15783466 + gene protein_coding_gene FALSE TRUE AT4G32710.1 kinase similar to ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G24550.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.990629116092242 -11.7981028451560 1.53852622459869e-07 0.00237640760651513 11.0831100536816 4.04194252292925 -0.990629116092242 0.0362869428873206 AT3G03770_at 4.04927014116183 4.1454089863935 4.00475480338569 3.84753830274266 3.579714505971 3.30711045179883 7.43570165020416 7.12519794972311 4.94180839160804 7.00383289654675 5.92135173452823 6.17215518222618 5.47578272829223 5.20171912714976 5.70646254424171 6.43650974385053 5.39292861438437 5.72659612807935 5.92803295350114 0.250951095328366 0.247892218610681 0.246915038290972 0.246915038290972 0.246915038290972 0.250954035141863 0.254328169454261 0.249651474999729 0.267890185679356 0.247713551433428 0.248929303512082 0.251504632956925 0.251605965597567 0.259185919005470 0.253676200699947 0.249111318602856 0.258891569925858 0.251788580959434 0.259405324001443 3 3|0 -|/ 945460 946279 945774.5 945146 949045 - gene protein_coding_gene FALSE TRUE AT3G03770.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G14210.1); similar to putative brassinosteroid LRR receptor kinase protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07439.1); similar to transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAQ01159.1); similar to Protein kinase [Medicago truncatula] (GB:ABD28527.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -1.10390917721869 -11.7546950106042 1.59717955463251e-07 0.00246588551439714 11.0635243583888 10.5428769185373 -1.10390917721869 0.0782936525604936 AT1G72970_at 3.91864138506623 4.41320797550834 2.11483346133123 1.97439830719847 2.48316821018221 2.55790032252929 6.40102864724889 6.92931212551502 6.50489922286398 6.40348620779088 7.93495112846258 8.81684699574064 6.51206970708973 7.11160618201283 8.16891298762429 6.89559324355166 4.23104063303482 6.52111437787642 6.6473409140045 0.278857368568287 0.274754622140408 0.308083003399176 0.295149961578171 0.275713067789586 0.287034568767242 0.272103660850362 0.278468802391047 0.275237208888349 0.275218695256298 0.273246261161723 0.272103660850362 0.272103660850362 0.276172051799998 0.272103660850362 0.272103660850362 0.276393151840761 0.278087561604210 0.277275099359586 1 1 + 27458766 27459191 27458990.091 27456427 27459625 + gene protein_coding_gene FALSE TRUE AT1G72970.1 HTH (HOTHEAD); aldehyde-lyase Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. Identical to Protein HOTHEAD precursor (Protein ADHESION OF CALYX EDGES) (HTH) [Arabidopsis Thaliana] (GB:Q9S746;GB:Q9SXZ3); similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12570.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os09g0363900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062996.1); similar to putative mandelonitrile lyase [Oryza sativa] (GB:AAF65820.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) -1.31376549965999 -11.6993327124487 1.67553322998178e-07 0.00258551532718488 11.0383538270804 10.6203574818944 -1.31376549965999 0.128222466683990 AT1G03870_at 6.00841684718571 6.36950198794542 4.10670032022447 4.70738092586233 5.06039576202304 5.30814156234905 7.23170508634415 7.56816184626922 9.43315991445768 8.32886431190072 9.70358517518997 8.02210240229435 8.71947284986216 9.04683063765363 8.67770975984959 7.9934760504079 6.16728612025233 8.29966860507386 9.45568837651017 0.248414523201624 0.240381973371032 0.254357679202698 0.243611013019253 0.243645806253013 0.251829432444283 0.235930546261572 0.240268596648698 0.249169766699698 0.235214126616907 0.235214126616907 0.235214126616907 0.239377466418571 0.235214126616907 0.238727186342264 0.239755655476848 0.241970407843482 0.245164811106185 0.235547024211341 1 1 - 982693 983186 982915.273 982508 983539 - gene protein_coding_gene FALSE TRUE AT1G03870.1 FLA9 (FLA9) fasciclin-like arabinogalactan-protein 9 (Fla9) Identical to Fasciclin-like arabinogalactan protein 9 precursor (FLA9) [Arabidopsis Thaliana] (GB:Q9ZWA8;GB:Q8H794); similar to fasciclin-like arabinogalactan-protein, putative [Arabidopsis thaliana] (TAIR:AT5G44130.1); similar to unknown [Brassica rapa] (GB:ABK78690.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.37129810843564 -11.6329740575963 1.77499058072870e-07 0.00273827796889017 11.0078989093293 14.4957192011233 -1.37129810843564 0.141204631542089 AT4G12390_at 6.96827730697238 7.41962982867782 5.52738391062655 5.76358712149604 5.20386285063069 6.11788224501433 7.98521285471395 8.55306932459363 7.98965514439174 8.5593774488435 6.86247006050363 7.03572841427103 7.27069462320546 6.91889687500197 6.98325470798024 7.4402595522851 6.89090241386169 6.15303459260582 8.4278655360168 0.211585798563333 0.209950447722322 0.216165602720005 0.207690587492295 0.215002225995917 0.206589786761549 0.217779841890630 0.214873554680625 0.207812607509934 0.207525646505311 0.205601375324 0.205788343953156 0.205601375324 0.205601375324 0.211418899333867 0.208006981134668 0.218354170828814 0.212064667012866 0.209125999659657 4 4 + 7336653 7337145 7336882.364 7336494 7337353 + gene protein_coding_gene FALSE TRUE AT4G12390.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -1.72979792579193 -11.6173741985943 1.79929001909961e-07 0.00277558478346306 11.0006939791103 14.3273821126982 -1.72979792579193 0.206029806783323 AT2G22170_at 3.56093381751457 3.41228816625263 0.921385885121865 1.13935691965626 0.845948560471202 1.20605521704407 3.35293541987294 3.70359519736673 4.96750589935192 5.05978397617853 6.69170481082713 7.98331512098418 4.39523808340373 5.91692185345727 7.14581979563099 2.95640000499182 1.76051453364693 5.84411759419537 5.50278744698535 0.29610383925285 0.293008725643553 0.303965173913427 0.305468297788636 0.303465323679895 0.304638856282960 0.287228704306738 0.287228704306738 0.299056237877026 0.302818508542853 0.303754122009471 0.29950200419234 0.290499265315163 0.299915916280881 0.296850541033416 0.287338917473899 0.293703081030703 0.296559299156506 0.288637266453573 2 0|2 /|- 9434100 9434526 9434265.6 9433929 9434897 - gene protein_coding_gene FALSE TRUE AT2G22170.1 lipid-associated family protein similar to lipid-associated family protein [Arabidopsis thaliana] (TAIR:AT4G39730.1); similar to dehydration stress-induced protein [Brassica napus] (GB:AAK01359.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976) -1.15959498543739 -11.5305605497763 1.94128274849316e-07 0.002994040383001 10.9602789603158 7.52453560565292 -1.15959498543739 0.0982374465811921 AT1G19640_at 2.32602103321430 2.43153025000437 2.59372473546009 2.49257549895555 1.79496055397394 1.51346180340264 6.09247727810376 6.05628924732951 2.26615400137154 3.10471326434513 2.21613752906524 2.10249554861065 3.01473982062455 3.36515699145805 1.7260471900367 4.51009201405806 3.7791155172445 1.64436088852597 2.68476958809797 0.235338827657496 0.237730062416229 0.242580942905575 0.236451916159224 0.242410696039618 0.245178486372348 0.263858626396335 0.270605270260474 0.244845115199330 0.245180650621834 0.242251847770213 0.235338827657496 0.239305941840552 0.236443054480375 0.244192976862452 0.249796072037018 0.242220267447642 0.247717932559216 0.240763995715857 1 1 - 6789169 6790391 6789686.091 6788876 6791837 - gene protein_coding_gene FALSE TRUE AT1G19640.1 JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment. Identical to Jasmonate O-methyltransferase (EC 2.1.1.141) (S-adenosyl-L- methionine:jasmonic acid carboxyl methyltransferase) (JMT) [Arabidopsis Thaliana] (GB:Q9AR07;GB:Q9FWR8); similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G11480.1); similar to jasmonic acid carboxyl methyltransferase [Capsicum annuum] (GB:ABB02661.1); similar to Jasmonate O-methyltransferase (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) (GB:Q9AR07); similar to Jasmonate O-methyltransferase (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) (Floral nectary-specific protein 1) (GB:Q9SBK6); contains InterPro domain SAM dependent carboxyl methyltransferase; (InterPro:IPR005299) -1.00917145068342 -11.5094850356601 1.97755868937658e-07 0.00304959325488762 10.9503852278479 5.90262028608444 -1.00917145068342 0.0552460536557897 AT2G28950_at 8.67712239170964 9.05290194017597 3.84223756435726 4.63249332704158 6.60103557272927 7.07195076403176 8.21528064284877 8.76394042525436 9.95368305863783 9.4194527388608 9.95431160372488 10.6497085036960 9.35607366337541 9.69261216088842 10.5102989388365 9.45393962588908 7.2604415877022 9.57536497711249 9.7566471717174 0.160878091507663 0.156937506569897 0.186590397113976 0.208085383202493 0.196401923744876 0.181421766403894 0.170253898305491 0.156937506569897 0.158123007739175 0.159302143740000 0.159527312988419 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.195689740803465 0.156937506569897 0.161784880812647 2 2|0 -|/ 12438961 12440063 12439533.7 12438418 12440672 - gene protein_coding_gene FALSE TRUE AT2G28950.1 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A6 precursor (AtEXPA6) (Alpha-expansin-6) (At-EXP6) (AtEx6) (Ath-ExpAlpha-1.8) (EXPA6) [Arabidopsis Thaliana] (GB:Q38865;GB:O81065;GB:Q8LDV8); similar to ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) [Arabidopsis thaliana] (TAIR:AT2G39700.1); similar to Expansin [Brassica napus] (GB:CAA04385.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.64685790835472 -11.4322731718054 2.11687557254119e-07 0.00326295200751499 10.9138610291363 16.7403810980478 -1.64685790835472 0.196438244429977 AT4G28780_at 3.46598527279005 3.54290630929388 1.29014768259584 0.755239797383294 1.99549179345811 1.97429850557423 5.09758953565109 4.22180769564790 5.80365393703828 4.7747675172266 6.18403615106542 6.69635480925077 3.39346264952001 5.24842869774873 7.08340808836924 2.89683149125296 2.11059555601110 3.65686405860216 4.90854070612648 0.254994109689462 0.253668686706906 0.256427549707896 0.269553692062091 0.260152264572748 0.251608014994614 0.260864339368201 0.259749076761248 0.260956767977279 0.255227649487539 0.251551383278102 0.256268686381423 0.254508570142432 0.258018515798236 0.251551383278102 0.251551383278102 0.252175973029679 0.252307218392028 0.256127251598353 4 4 + 14216418 14217021 14216722 14215551 14217585 + gene protein_coding_gene FALSE TRUE AT4G28780.1 GDSL-motif lipase/hydrolase family protein similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -1.54092539549788 -11.4126624084955 2.15393205788456e-07 0.00331964008761168 10.9045144046911 7.7034675279783 -1.54092539549788 0.178127501443517 AT1G74560_at 7.6394733732648 7.47405076250732 7.13212511666284 7.32787722538585 6.69070065075581 6.88797672054953 8.49102543959449 8.55011649187743 5.30190467484322 6.81093343070513 4.50168675682874 4.93631466907314 5.30503357153988 4.80197921011591 5.88944164564325 4.5316326335669 6.69679329386338 4.97822627300736 6.40158780348165 0.222218198520603 0.213521627189907 0.21557391754735 0.220049963234434 0.215804556751996 0.213521627189907 0.214213386950614 0.218251023532255 0.229040488026655 0.222486697765938 0.216348420819813 0.226946988424581 0.223631052739496 0.227355781702682 0.214256866565535 0.217918973861568 0.229184057288768 0.217067392723780 0.227705976920279 1 1|0 -|/ 28021817 28022892 28022456.556 28021245 28023710 - gene protein_coding_gene FALSE TRUE AT1G74560.1|AT1G74560.2|AT1G74560.3 NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding|NRP1 (NAP1-RELATED PROTEIN 1); DNA binding|NRP1 (NAP1-RELATED PROTEIN 1) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. similar to NRP2 (NAP1-RELATED PROTEIN 2), DNA binding / chromatin binding / histone binding [Arabidopsis thaliana] (TAIR:AT1G18800.1); similar to Os02g0576700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047218.1); similar to nucleosome/chromatin assembly factor A [Zea mays] (GB:AAK67146.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.99766669238884 -11.3282706640655 2.32162546967039e-07 0.00357669619857420 10.8639657300179 13.2124751274322 -0.99766669238884 0.0568960807203581 AT1G16350_at 6.42590491381645 6.50151419294823 5.08541527122434 5.3782857956839 5.11114934774608 5.69670295569551 6.90068854731032 7.29612272653837 5.19832923806846 6.9654836629358 4.67812510342419 5.75151261806892 5.10903056627318 4.65366913808836 5.81099153215299 5.67021225826157 5.0735436380753 5.09332105963892 6.90664845856691 0.234985238501568 0.233806348522073 0.240646633885758 0.243224122566148 0.232482314836222 0.235740677058133 0.229926497572028 0.233747796295674 0.244759463713209 0.229445797783519 0.233465114164 0.232966386729822 0.229146638764067 0.236503661144987 0.238877507467259 0.230659797374723 0.242700738628605 0.235219084630575 0.232573278447511 1 1|0 +|/ 5592005 5592825 5592341.625 5590945 5593001 + gene protein_coding_gene FALSE TRUE AT1G16350.1 inosine-5'-monophosphate dehydrogenase, putative Identical to Probable inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD) [Arabidopsis Thaliana] (GB:Q9SA34); similar to inosine-5'-monophosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79470.1); similar to inosine monophosphate dehydrogenase [Glycine max] (GB:CAB38030.1); similar to inosine monophosphate dehydrogenase [Vigna unguiculata] (GB:AAO40253.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain IMP dehydrogenase; (InterPro:IPR005990); contains InterPro domain IMP dehydrogenase/GMP reductase; (InterPro:IPR001093) -1.29496948325417 -11.3273835170057 2.32346183336956e-07 0.00357929295430581 10.8635366358928 11.8429085650896 -1.29496948325417 0.133008144510308 AT2G04030_at 7.79199870386452 7.80066875953718 7.56962958780232 7.27571887163819 7.01747979018949 6.45218297055431 8.60616710814667 8.40083364002675 7.86437846502581 8.49619715424055 6.36451207281658 6.64662823593848 7.00981451798831 6.29223192731603 7.48916300672063 7.41485439515238 7.76348721119589 6.5955001280296 8.55279529890308 0.175352018155507 0.182528050072235 0.179485260582136 0.180997464210994 0.178738729493558 0.179439232234789 0.185302400564898 0.178343237139807 0.181407459366984 0.183751198408317 0.185272408352904 0.175609411050023 0.187743779224082 0.182440473123143 0.187991453330919 0.188309275988013 0.186166886058378 0.183976112654238 0.178380928150382 2 2|0 +|/ 1285130 1285878 1285436 1281838 1286101 + gene protein_coding_gene FALSE TRUE AT2G04030.1|AT2G04030.2 CR88 (EMBRYO DEFECTIVE 1956); ATP binding Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. similar to ATP binding [Arabidopsis thaliana] (TAIR:AT3G07770.1); similar to heat shock protein 90C [Chlamydomonas reinhardtii] (GB:AAU10511.1); similar to heat-shock protein [Secale cereale] (GB:CAA82945.1); similar to Hsp90 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22030.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -1.21429864183806 -11.3233071364338 2.33192007883336e-07 0.00359208968943491 10.8615642148623 15.2400753837789 -1.21429864183806 0.115853732913922 AT1G33770_at 3.35564039269338 3.38670391870553 2.60015487983058 2.49022375746888 2.5181138285431 2.67001291414815 3.53826583213265 3.56764669854498 5.39415966463485 4.72727636311741 4.45381512776407 3.87516371268210 3.64381345817702 4.24495158115267 4.29515030178945 4.05189597505533 3.20141055944549 4.17052538446468 4.85044404856227 0.217272706960878 0.209380446048952 0.213396980166570 0.209753922303533 0.209028692738576 0.21818076239315 0.208697152091437 0.209893483938240 0.21763020482097 0.208920837879214 0.209143598360625 0.206184841421308 0.206184841421308 0.212262029361358 0.206184841421308 0.206184841421308 0.211906143875785 0.214399159351381 0.212706477677618 1 1 + 12243722 12244375 12244058.091 12242106 12244442 + gene protein_coding_gene FALSE TRUE AT1G33770.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10010.1); similar to transposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96101.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.945486897529975 -11.3223581021001 2.33389405807545e-07 0.00359466362824781 10.8611048298052 7.507204005094 -0.945486897529975 0.0332815937405643 AT1G78570_at 9.20158903438035 9.38862873380222 8.85502900939578 8.64456922065605 7.71604417923354 7.58759609822802 9.93002989101427 10.0655416053341 8.79201274262734 9.15429192454645 8.02916824485632 8.87313335193836 8.52311964485811 8.0975851491882 7.82003821540363 8.03742450053737 8.15556213037353 8.96390797773583 8.643500170512 0.167139053297423 0.170848517243882 0.182365252074074 0.188134869467899 0.184720068821244 0.178614247606601 0.172600358874729 0.171965877780958 0.179031408500994 0.167498035554306 0.174601912904493 0.172067793625196 0.173124704132129 0.180186836857259 0.178588262538217 0.170309811520218 0.173551952783246 0.170382609781656 0.170014832029918 1 1|0 +|/ 29556416 29557038 29556711.1 29554542 29557331 + gene protein_coding_gene FALSE TRUE AT1G78570.1 RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli. Identical to Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC 1.1.1.-) (RHM1) [Arabidopsis Thaliana] (GB:Q9SYM5); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM3 (RHAMNOSE BIOSYNTHESIS 3), catalytic [Arabidopsis thaliana] (TAIR:AT3G14790.1); similar to UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase (ISS) [Ostreococcus tauri] (GB:CAL58329.1); similar to rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95280.1); similar to Os03g0278200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049724.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-glucose 4,6-dehydratase; (InterPro:IPR005888) -0.998206783310791 -11.2860764243386 2.41073576610538e-07 0.00371253307980228 10.8434914346565 17.5115088120506 -0.998206783310791 0.0584657200084131 AT2G25840_at 6.39517151666467 6.22263091680984 5.34044193643078 5.27231376051137 5.56816503463616 5.33267585634617 7.0255769931099 6.79661696055315 6.78008510564783 6.82983531172662 5.81888330117218 6.65622820246188 5.68349535746601 5.91648958740935 6.99796599744402 6.0709484947968 5.45404565758359 5.90562504413671 6.94518494871837 0.210436818452846 0.225577906188800 0.210436818452846 0.212398192025485 0.211729199843029 0.221926595414375 0.211341159488845 0.224144037473302 0.233339611421526 0.212850371488709 0.219227579302117 0.218616942824104 0.212863354503610 0.217374231253718 0.225389756701254 0.210436818452846 0.226872682686415 0.2178650628105 0.210436818452846 2 2|0 +|/ 11030886 11032167 11031531 11028955 11032448 + gene protein_coding_gene FALSE TRUE AT2G25840.1|AT2G25840.2|AT2G25840.3 OVA4 (OVULE ABORTION 4); ATP binding / aminoacyl-tRNA ligase similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305)|similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -1.01017076659603 -11.2016157362482 2.60046037687376e-07 0.00400314870415946 10.8021006356045 12.4515301188860 -1.01017076659603 0.0652784480680254 AT4G02790_at 7.87289871409235 8.0796060454308 6.89820100576038 6.6330963065436 7.10438117863222 7.30328181654481 8.43901059155822 8.18935307881018 8.20105637901508 8.15725778122234 6.54028435034714 7.43721251923892 6.78994801393296 6.80756993845925 8.02368967216629 7.80993039568817 7.34362767948789 6.30848234194474 7.90830376996738 0.155085702844877 0.155284960790435 0.166783975401788 0.1565464665336 0.161765581044978 0.157670183659104 0.158306153276742 0.159510477674623 0.160700490813936 0.163586667085912 0.166151222415402 0.15258346476508 0.168153390688251 0.157550442021035 0.154029912352881 0.153269899815004 0.155635155942930 0.160463298158079 0.158405583674667 4 0|4 /|+ 1248620 1249325 1248950.3 1247386 1249588 + gene protein_coding_gene FALSE TRUE AT4G02790.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G41670.1); similar to Os05g0430400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055624.1); similar to COG1161: Predicted GTPases [Nostoc punctiforme PCC 73102] (GB:ZP_00109854.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) -1.05837828004803 -11.1987093604790 2.60727085720471e-07 0.00401337203049521 10.8006665969945 15.1757114708265 -1.05837828004803 0.0802232519319905 AT4G23940_at 5.40257698030954 5.23557259602673 3.96583966129467 3.64520011696028 4.24277849289189 4.25108429234571 6.71169331140585 6.23908812382674 4.96871672065315 5.76060954562921 4.30579926991075 5.77760682370127 4.42911987468863 4.64362002001259 5.69333780541285 5.83210314256352 5.03929166328289 5.0735869145041 5.82789219438455 0.227310956732259 0.215018533955311 0.228822977352463 0.224354538259268 0.216549822551456 0.225663608493182 0.216951283609882 0.219237281658686 0.220167544219600 0.227259410580393 0.217092633913974 0.215018533955311 0.215018533955311 0.227102212824133 0.220345734642401 0.215420305807498 0.215721511606301 0.215466965336997 0.219827968214109 4 4 + 12441192 12441821 12441546.818 12437118 12441978 + gene protein_coding_gene FALSE TRUE AT4G23940.1 FtsH protease, putative similar to VAR2 (VARIEGATED 2), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G30950.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL55821.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -1.14538587149090 -11.1966590598323 2.61208694263471e-07 0.00402052422210334 10.7996545635834 10.2709197016236 -1.14538587149090 0.102982041833137 AT4G25420_at 2.92891102837801 3.19162903126610 1.60944021727845 1.94832058380517 2.72464487734170 2.6269690296435 4.12873438969762 4.28384130813583 2.74736191115946 3.8280081432831 2.47727571763888 3.79009458444074 3.14663211201986 2.55517468416426 3.17570751466929 3.54155063422982 2.46008896152291 2.81205432717094 4.51676462311614 0.223090529022897 0.228912927320801 0.223960197057811 0.232205737090082 0.227955509428962 0.220979388211161 0.233007134039272 0.222989952054078 0.237654286780225 0.229696836822480 0.226819831101715 0.223873736279806 0.223865710535453 0.2278079823059 0.230214358582438 0.221695811032105 0.226197848920222 0.223603018288393 0.233923949021966 4 4|0 -|/ 12990994 12991524 12991286.3 12990894 12992468 - gene protein_coding_gene FALSE TRUE AT4G25420.1 GA5 (GA REQUIRING 5); gibberellin 20-oxidase/ gibberellin 3-beta-dioxygenase Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light. Identical to Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20 oxidase 1) (GA 20-oxidase 1) (AtGA20ox) (20ox1) [Arabidopsis Thaliana] (GB:Q39110;GB:Q38844;GB:Q9FYN4;GB:Q9FYN5;GB:Q9STJ5); similar to ATGA20OX2/GA20OX2 (Gibberellin 20 oxidase 2), gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT5G51810.1); similar to (GB:2116434A); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -1.05424558561150 -11.1374196818864 2.75549088444175e-07 0.00424014937297896 10.7702732985656 6.27641157961079 -1.05424558561150 0.0806997854244828 AT3G07350_at 5.97597518753023 6.72208237086955 3.15300078901244 3.49056707378717 5.12052107178018 4.99365094279343 5.51452551129929 6.0513022446995 5.01915837106328 5.72112571458135 4.46887889250847 4.53870486106238 4.26859571035637 4.30708848706403 4.13457195502843 3.01285932337546 3.92224995408941 4.26583588252697 4.74967175704293 0.267659873918687 0.275791389523473 0.277993712052093 0.274461546042313 0.256475868765940 0.263024372988753 0.2747724999085 0.265572601607098 0.267604445439305 0.2635677744219 0.258996837410152 0.256475868765940 0.259122104305627 0.256475868765940 0.262870480763497 0.272364306989097 0.257993914333929 0.259248637186455 0.257381455776225 3 3 + 2348035 2348535 2348300.182 2347474 2348797 + gene protein_coding_gene FALSE TRUE AT3G07350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25240.1); similar to Os01g0915000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045184.1); similar to uncharacterized plant-specific domain TIGR01615 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93251.2); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -1.46250342011704 -11.1197337185461 2.79994268700248e-07 0.00430827181249071 10.7614485772588 9.76678652271178 -1.46250342011704 0.170864838252124 AT1G17050_at 7.22229887688393 7.77218599281886 7.16849711024451 7.38255062506096 6.7593559978174 6.68312944823211 9.58876468554214 9.87651072187641 8.60592245724873 9.29630804694916 8.07517143014713 8.45028097502144 8.3845274648754 8.29520893851327 7.65509672984145 9.26590713495453 8.08700256650767 8.20148543722306 9.18656457999366 0.22450405086992 0.210379504845380 0.221643526123624 0.220749198154477 0.224135319738464 0.225135515968502 0.210379504845380 0.219488368622302 0.238976428556057 0.218621629206564 0.219662082938308 0.215953396488321 0.217674764986191 0.222882244631095 0.217411674014066 0.218560489721360 0.236219365518072 0.211544616439978 0.214084536009235 1 1 + 5830821 5831152 5830963.909 5829092 5831326 + gene protein_coding_gene FALSE TRUE AT1G17050.1 SPS2 (Solanesyl diphosphate synthase 2); dimethylallyltranstransferase similar to solanesyl diphosphate synthase (SPS) [Arabidopsis thaliana] (TAIR:AT1G78510.1); similar to solanesyl diphosphate synthase [Hevea brasiliensis] (GB:ABD92707.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -1.17216002535164 -10.9903838660803 3.14969427277495e-07 0.00484422979152787 10.6961581671962 16.4723784053259 -1.17216002535164 0.114373687165612 AT1G35190_at 7.30984124183596 7.4852438677929 6.09344979118358 6.21384696113135 7.34936175167866 7.2529629870495 6.96960240334258 6.75987061586387 5.78369648967292 6.59497942878951 4.20455678998424 4.32494113898001 5.43413500660741 5.47195918354519 3.95295249555844 4.42262948684305 5.20922506234053 5.15726925913672 6.47204722416747 0.230322904550319 0.231916076360252 0.234368164224285 0.237752594363659 0.231255878622291 0.243370922419850 0.230322904550319 0.233455944621875 0.232717773899036 0.231163520340721 0.234393580533504 0.231751010795746 0.239770073462892 0.242420024870315 0.240205493507011 0.232841536233902 0.244046143563416 0.230322904550319 0.230558886399985 1 1|0 +|/ 12891420 12892578 12892153.889 12890401 12892852 + gene protein_coding_gene FALSE TRUE AT1G35190.1|AT1G35190.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G46480.1); similar to Os01g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042255.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81241.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.95754999372512 -10.9472162420758 3.27674022422236e-07 0.00503897111680914 10.6740722893203 12.4571639193603 -0.95754999372512 0.0543242003744536 AT4G01950_at 3.91432189703711 3.73135530216507 3.03136449213510 2.80660953603408 2.41339552723062 2.35418002968088 5.79464962070548 5.47410309220648 3.30764302707378 3.50901431082045 4.87077393816555 4.47339498323079 3.09856799041507 4.37360010309991 3.5105221880555 2.74370615705017 2.49522646312686 3.37293813763674 3.91580738528701 0.258848593183472 0.260332141816140 0.271180003293756 0.264754972428039 0.259508668400427 0.267873360592351 0.264432685036108 0.270171595372919 0.259840400393695 0.25972392552383 0.260277248202187 0.256240174034982 0.264255597266444 0.256240174034982 0.256240174034982 0.260464570952313 0.264438509437449 0.262412097665257 0.256240174034982 4 4 - 844732 845134 844935.182 844409 846787 - gene protein_coding_gene FALSE TRUE AT4G01950.1 ATGPAT3/GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. Identical to Probable glycerol-3-phosphate acyltransferase 3 (EC 2.3.1.15) (AtGPAT3) (GPAT3) [Arabidopsis Thaliana] (GB:Q9SYJ2); similar to ATGPAT2/GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT1G02390.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE87665.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024) -1.01868353886060 -10.9462736718153 3.27957555152815e-07 0.00504300332558484 10.6735883679903 7.28741218022835 -1.01868353886060 0.075482016138355 AT2G05790_at 7.84228165329684 8.42746021732841 4.00044174510823 4.18875500072261 6.65714781444775 6.63394189774363 7.80136514710741 8.10768390052938 8.41212579944022 8.14334546942045 9.33832601817743 9.30580780797723 8.69372692436562 8.89656689658178 9.2880934073244 8.49901501083725 7.08111248553387 8.70837351615892 8.70581790254653 0.195333223403207 0.197186751412743 0.237689791593133 0.259450682427931 0.209905631946883 0.202039692085191 0.206641595572140 0.196202862369066 0.210877842580478 0.197580178479637 0.199775739266359 0.201802410814207 0.199366513881131 0.20948071567752 0.196219239104569 0.195861976455975 0.212826619244895 0.195648131788039 0.194173742533923 2 2 + 2200391 2200889 2200646 2199216 2201481 + gene protein_coding_gene FALSE TRUE AT2G05790.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.18433904024640 -10.9187794574705 3.36346219910367e-07 0.00517065043868207 10.6594410645118 15.2807884131215 -1.18433904024640 0.118925895651139 AT3G23430_at 4.50245274749638 4.26801363459938 3.19342555672443 3.23110279169870 2.63433920835814 2.34654688654588 5.79882662495758 5.15817388877052 2.84552061473652 3.66648061465395 3.15733084222616 3.56370671618172 2.58803489948021 3.47876609340125 2.84299966563551 2.60174346926982 3.85927730812888 2.95741268158666 3.99072787681233 0.255262362591775 0.246420393456414 0.259073030381491 0.249399033734226 0.24785611766749 0.262652215097251 0.259055023877254 0.263217001601927 0.259013103002744 0.244705488489874 0.244705488489874 0.244705488489874 0.244705488489874 0.24869604750863 0.251804500382785 0.246250494297606 0.262948980859910 0.246921021273347 0.248937595455445 3 0|3 /|- 8388004 8388710 8388312.333 8387515 8393303 - gene protein_coding_gene FALSE TRUE AT3G23430.1 PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical to Putative phosphate transporter 1 (PHO1) [Arabidopsis Thaliana] (GB:Q8S403;GB:Q9LW54); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G68740.1); similar to putative PHO1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44936.1); similar to Os06g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057682.1); similar to Os02g0809800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048464.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -1.2251319278515 -10.9069149922681 3.40037758113533e-07 0.00522672037996312 10.6533172140783 7.20764449817206 -1.2251319278515 0.128298953422626 AT3G50060_at 2.73445839267057 2.45549440193812 2.85956207246122 2.73260533901841 2.35488178626124 2.02254531464305 4.00464683533227 3.9779998371378 6.28108501128519 5.06768118930952 5.45371511014253 4.83483519764005 4.06401191772357 4.86851041897796 3.99578531654846 3.98921504787701 3.4322710796265 4.27162505340512 5.47708391008315 0.265082454483563 0.260147964157509 0.26903255716194 0.257617279733593 0.265188229573988 0.27178624091183 0.255813419301042 0.255813419301042 0.262280698027740 0.275329948954689 0.264676451753075 0.258546473924482 0.256439648909093 0.26666573351639 0.266352916470343 0.257324096541543 0.273198705180023 0.260573366936842 0.269196680683171 3 3 - 18569164 18569681 18569466.182 18568955 18570089 - gene protein_coding_gene FALSE TRUE AT3G50060.1 myb family transcription factor Member of the R2R3 factor gene family. similar to AtMYB44/AtMYBr1 (myb domain protein 44, myb domain protein r1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G67300.1); similar to MYB6 [Malus x domestica] (GB:AAZ20429.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.02281089974517 -10.8883460289729 3.45903827630136e-07 0.00531654183067519 10.6437098535178 7.8789556705838 -1.02281089974517 0.078372273701268 AT2G21540_at 4.33071925880467 4.14462473139487 2.7305167523493 2.7512046562772 2.94595150887718 2.7727169176256 5.9866927745001 6.16168622238422 6.72407033630425 6.04588807069997 8.33395943727976 7.6141588377546 5.72234610414447 7.43701817431421 7.1203983511452 5.36565574679054 4.76654632225013 7.74308889417661 6.15116931431213 0.211859914654648 0.214295251910722 0.221611751869105 0.231198834650676 0.216693206362032 0.225004510282813 0.220461576929885 0.220672020083948 0.227100594831979 0.215891244547002 0.214530016135279 0.214953931646453 0.219050123789234 0.213639414272588 0.220382836651440 0.211859914654648 0.216082723808999 0.215676486725809 0.214116142618999 2 2 - 9228068 9228857 9228513.545 9227629 9231576 - gene protein_coding_gene FALSE TRUE AT2G21540.1|AT2G21540.2 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative|phosphatidylinositol transporter similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G36490.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to SEC14 (secretion 14) [Arabidopsis thaliana] (TAIR:AT4G39180.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85401.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.949989689139414 -10.8831181687102 3.47575074473716e-07 0.00534188131958654 10.6409999512196 10.5129836314037 -0.949989689139414 0.0535329695057732 AT1G01390_at 6.3520864491554 6.46735683951863 5.88587777155499 6.17467367335289 5.83943443460419 5.86993095172399 8.60594904867064 8.53986183973154 4.00554774509698 4.752183681792 3.32134992609302 3.59239894358682 4.6506213521887 4.14980137093985 2.60579694284819 4.8340848778162 5.45913664192204 3.43791909972735 4.30120614609843 0.251718259449730 0.251877619131163 0.254873712541494 0.245399678470701 0.253239741420376 0.264041224869013 0.267883881982218 0.263384944278783 0.25893834341619 0.256892567239591 0.253886049543885 0.254576257282084 0.253548984703136 0.246973610373526 0.257639340375516 0.248333703606106 0.253651501048185 0.246236582604008 0.261426866243792 1 1 - 148322 148878 148638.273 148120 149806 - gene protein_coding_gene FALSE TRUE AT1G01390.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G01070.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.947712441532786 -10.8079840069427 3.72586311615734e-07 0.00572404350535253 10.6018060557593 10.8965802937321 -0.947712441532786 0.0552659470790468 AT1G68440_at 6.24769179339197 6.41688675226708 6.70481308831577 6.62419279695808 5.87472741568178 5.52756206788785 7.74707969326212 7.88058095736179 7.39003573283476 7.29647088544636 6.64711863149465 6.13401781750334 6.47934469826718 6.77719832508447 5.33579781100225 6.53272340895115 5.92443177210495 5.7658294586532 7.19457577597577 0.178008584922597 0.178008584922597 0.184427674725059 0.187284341116276 0.189612398676517 0.182371287517122 0.187788474940457 0.18136894040657 0.205553622913092 0.178167564248331 0.178008584922597 0.182566809460026 0.182531713120861 0.184714090744494 0.210617566567607 0.183144860714432 0.191211687309497 0.191020117474189 0.187386306215749 1 1 + 25662162 25662667 25662436.727 25661696 25662936 + gene protein_coding_gene FALSE TRUE AT1G68440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25400.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93249.1) -0.99218617394809 -10.7770717486709 3.83437423087191e-07 0.00588921538119616 10.5855453290794 13.3745677565416 -0.99218617394809 0.072077409101926 AT1G04770_at 8.146761926629 8.45329312528331 8.13476721322337 8.17884940523555 8.30298534806654 7.96026610369102 8.93332791864354 8.75789618743029 7.37405207921258 8.60734900277926 6.76893139635182 5.38172028218376 6.35558495450955 6.82133156361433 4.78931287745528 6.1316627048363 6.67818774184171 5.66679842260927 7.15116409546494 0.215352751024624 0.220207079072511 0.215267835049899 0.219657418465272 0.219079419059481 0.226477459800781 0.22434404982099 0.217827149788969 0.227667259276754 0.216109732655332 0.215453470048853 0.235777318846032 0.228745297785264 0.227774821550606 0.240668860941922 0.218226198286395 0.215418170132239 0.237970428198415 0.218096833959807 1 1|0 -|/ 1336656 1337108 1336839.3 1336370 1337848 - gene protein_coding_gene FALSE TRUE AT1G04770.1 male sterility MS5 family protein similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G48850.1); similar to Os05g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055980.1); similar to unknown [Oryza sativa] (GB:AAC72543.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.03263329408471 -10.7345855411849 3.98914107874221e-07 0.00612572504051653 10.5630665351421 15.2510415545641 -1.03263329408471 0.0855067608819189 AT4G25260_at 4.00148704354397 4.26829429628994 1.49327700058887 1.39251837311797 1.89190625971441 1.90359775006798 1.73630109392017 1.82973930233612 3.97370498601178 2.35586911583263 3.04730022077108 3.36131446608876 2.42756996677289 2.00081319657052 3.46261233844763 2.43074204993481 2.04247510604268 2.66311509431541 3.43672962902185 0.235613727984824 0.232993729701712 0.228384863887670 0.226669080552907 0.230675865707723 0.224268540173996 0.227303424739667 0.235868007526983 0.232926416622305 0.225278123901139 0.224075662995007 0.224779566609179 0.221759210646498 0.222174663343878 0.228769556781550 0.221759210646498 0.227400178800632 0.223200373273271 0.228110823769565 4 4 - 12936039 12936585 12936369.636 12935720 12936668 - gene protein_coding_gene FALSE TRUE AT4G25260.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) [Arabidopsis thaliana] (TAIR:AT5G62350.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.932286180118844 -10.7228900116954 4.03292434903231e-07 0.00619255533793911 10.5568520923223 5.28210383085913 -0.932286180118844 0.0519757232484086 AT4G12600_at 7.60173937516189 7.70070326673136 6.09854593950655 6.59385495747273 5.82293359513347 6.42478125130643 7.78965608868337 8.01412255882867 6.94445015961364 6.99103297336665 6.00485751519707 6.8905637570604 5.39005989259937 6.06842057619146 6.55454093776923 5.42299585496882 5.98049653555292 5.23140791459033 6.85279689279298 0.188766846858390 0.188316244790189 0.183268639379138 0.183268639379138 0.199903899888829 0.195028817505938 0.187761101931549 0.191080500281903 0.191150523970403 0.185962211636024 0.202175549188802 0.185698671759427 0.190499448604138 0.191004718491131 0.191530915162523 0.188000666945096 0.192488896636794 0.196396765303917 0.187205031583717 4 4 + 7453324 7454179 7453860.182 7453199 7454478 + gene protein_coding_gene FALSE TRUE AT4G12600.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); similar to ribosomal protein L7 [Hyacinthus orientalis] (GB:AAT08750.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -1.26401759438154 -10.7146208693360 4.06419488993542e-07 0.00624016483400685 10.5524513322334 13.4419644032275 -1.26401759438154 0.141411253222686 AT1G04710_at 6.97306321167143 6.74737411870772 5.84711816282388 5.7902390946708 6.22813634327963 6.10472360033427 7.64462437523436 7.56134397939244 6.27939295845303 7.24330806260906 5.11985622860311 6.24189577016035 6.24515733436526 6.1269874306746 6.3302697288345 6.18805420217753 6.13658118634794 6.18246207364397 6.49054930572403 0.197700128620168 0.196226934108154 0.200678217803686 0.206365876243757 0.195066065102155 0.206125423030567 0.205391415659068 0.194977512492331 0.205384510847069 0.196723897118949 0.203006231266259 0.204541549937478 0.196002651123064 0.199812221657846 0.204405919965922 0.194968823137115 0.200900547754143 0.201123872795170 0.198449912073398 1 1|0 +|/ 1323558 1324529 1324050.3 1321903 1324779 + gene protein_coding_gene FALSE TRUE AT1G04710.1 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative Identical to 3-ketoacyl-CoA thiolase 1, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 1) (Acetyl-CoA acyltransferase 1) (Peroxisomal 3-oxoacyl- CoA thiolase 1) (KAT1) [Arabidopsis Thaliana] (GB:Q8LF48;GB:O23014;GB:Q8LPI4); similar to KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT5G48880.3); similar to PED1 (PEROXISOME DEFECTIVE 1), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT2G33150.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase; (InterPro:IPR002155) -0.91936128444274 -10.6826672835040 4.18752363694870e-07 0.00642868628744365 10.5353917757116 12.9833235790708 -0.91936128444274 0.0478135738466197 AT3G17170_at 7.09899800448995 7.15383570729317 6.29047206612116 6.13147848101054 6.93518495038051 6.46437457601787 7.08967914683673 7.01324040786658 7.04561342778613 7.33704233119606 4.78325645337687 6.19649407878939 5.43490263837799 5.05924905867923 6.78951439074403 6.03340598032235 6.08370769695768 5.67346859017734 7.19066903316765 0.213353934921949 0.206874934213316 0.210010663885716 0.215498512480054 0.208369960546468 0.216812570469367 0.212162767664661 0.222561869224444 0.210315916739035 0.210536736154121 0.219525689751919 0.209553909449201 0.207120417444601 0.209785973668395 0.21439286563921 0.205370907374942 0.211417100229708 0.21410854295662 0.212487674739668 3 0|3 /|- 5853311 5853866 5853555.5 5853065 5854912 - gene protein_coding_gene FALSE TRUE AT3G17170.1 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03710.1); similar to ribosomal protein S6 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98957.2); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529) -1.03395960068046 -10.6746279696350 4.2191870940457e-07 0.00647687410806956 10.5310861154532 13.2460869799911 -1.03395960068046 0.0875238266152696 AT1G22650_at 6.09279866132694 5.81159743021751 5.73539100770232 5.68330719106158 4.45893033735645 4.55623269574119 6.25400955162434 6.3111346586819 5.41721718716947 4.7003661687935 4.12889200034686 4.87198601494595 3.61402265554002 4.28159338374496 3.99707486259181 3.90956754627329 4.16240890463147 5.07594348451026 5.19455936262093 0.208093184352808 0.204855768249694 0.208779550604867 0.202759730060388 0.205603060445841 0.210403352653988 0.202759730060388 0.204641523017702 0.208248890784691 0.210308653634888 0.205579346975246 0.203578106022426 0.211266726205727 0.208419344805381 0.217087305415031 0.237752157935882 0.206790151326777 0.205288051575098 0.202759730060388 1 1|0 -|/ 8013722 8014386 8014180.3 8013371 8015980 - gene protein_coding_gene FALSE TRUE AT1G22650.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G72000.1); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.928890616892753 -10.6504447458649 4.3160093635913e-07 0.00662507437311264 10.5181011138504 10.2925420314312 -0.928890616892753 0.0532035119864614 AT3G46900_at 6.07891363296678 6.12043790048988 4.39394565137194 4.24756068287915 5.28656004298913 5.20149546350619 5.97323643816547 6.32679295991309 4.81329941095385 5.39065451669313 3.32443863655198 3.73377582263525 5.43705219550506 4.27650964410786 2.79921185175047 6.33881730255004 6.02202875095533 3.49916490758436 4.82634914993177 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.295154416394659 0.292801574898091 0.292801574898091 0.294350293967314 0.297415971125811 0.297583418729056 0.297727509620446 0.292801574898091 0.292801574898091 0.313157334730617 0.299317248527072 0.292808576160658 0.309699792489974 0.293623263604166 3 3 + 17279999 17280292 17280156.273 17279860 17280495 + gene protein_coding_gene FALSE TRUE AT3G46900.1 COPT2 (Copper transporter 2); copper ion transporter encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast similar to copper transporter, putative [Arabidopsis thaliana] (TAIR:AT2G26975.1); similar to putative copper transporter protein [Oryza sativa (japonica cultivar-group)] (GB:BAB56072.1); contains InterPro domain Ctr copper transporter; (InterPro:IPR007274) -0.96184045480087 -10.5723478621422 4.64549615511971e-07 0.0071289783996467 10.4758264672059 10.1731058039425 -0.96184045480087 0.0682175734989552 AT4G16155_at 6.51467356446901 6.63658798742897 4.56440026174808 4.00112903303395 4.71924766947237 5.03947268695435 7.61491750120266 7.49041772193674 6.83739216784288 7.64173491866859 7.53406133733939 7.88624770774215 6.7487529818294 7.12349808458322 8.53294347271541 6.83667267780739 7.02274429931214 7.48195758638775 7.06717093365161 0.229206420332373 0.228670042905603 0.241603582127201 0.253286258158345 0.241586165994470 0.242955928036943 0.242587521767586 0.239036143436183 0.258997678667702 0.231424676383248 0.228670042905603 0.229077738338914 0.228670042905603 0.234766495608859 0.233912745625023 0.237021607925711 0.246312965384860 0.238957474693100 0.239260615048111 4 0|4 /|- 9153609 9154582 9154080.875 9153379 9157278 - gene protein_coding_gene FALSE TRUE AT4G16155.1 dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) similar to LPD1 (LIPOAMIDE DEHYDROGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G16950.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -1.13466317627346 -10.5705895276328 4.65322143027709e-07 0.0071403682847602 10.4748686290473 13.1115853575402 -1.13466317627346 0.116112052959808 AT1G23480_at 2.59909722712135 3.36556141291843 0.960291390332858 1.05405615014554 2.25397083255257 1.83066787174794 3.91340944782876 4.1369287238022 5.62479014778088 4.13385961095415 5.56625839273687 4.93688702515101 4.49954042702111 4.59065580242863 4.25104218455916 4.02420985598039 2.20609231135299 3.81831493692205 4.93121855977383 0.303974911381051 0.296680590652597 0.313197177531363 0.309145710469447 0.301021611818942 0.319292376036035 0.299890830112786 0.301331168661121 0.311732909386179 0.293851130529266 0.304785410310638 0.293748314118784 0.307121649181575 0.300410938489139 0.299161881512112 0.290387858965007 0.297946615263323 0.307045412329776 0.299243724857555 1 1 + 8335516 8336195 8335733.545 8333009 8336374 + gene protein_coding_gene FALSE TRUE AT1G23480.1|AT1G23480.2|AT1G23480.3 ATCSLA03 (Cellulose synthase-like A3); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA14 (Cellulose synthase-like A14), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G56000.1); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to cellulose synthase-like A2 [Physcomitrella patens] (GB:ABD79100.1); similar to cellulose synthase-like A1 [Physcomitrella patens] (GB:ABD79099.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173)|similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G03760.1); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to cellulose synthase-like A1 [Physcomitrella patens] (GB:ABD79099.1); similar to Glycosyl transferase, family 2 [Medicago truncatula] (GB:ABE81491.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.31950014877011 -10.5465270524576 4.76035112134088e-07 0.00730428276058545 10.4617339303255 7.08087182698386 -1.31950014877011 0.157223323278535 AT4G12730_at 4.875026591873 5.32109030450211 0.897252623889382 1.18136032685966 1.42508202168467 2.03649159803192 6.04413975932896 6.57204627106111 7.36928782006195 6.212023636696 9.88330609185022 9.43360167514755 8.16313510493195 9.12485665397508 9.50771467469081 8.36784599485412 5.1786058447885 7.91290458817193 7.00639473402733 0.300467477620355 0.304099481429571 0.314267564716817 0.322392363056388 0.307249986210107 0.306853538558008 0.300467477620355 0.304039277542952 0.300467477620355 0.305375582275760 0.305755535606301 0.305812834148413 0.300608661865731 0.304350267742379 0.303864878798863 0.300467477620355 0.30333408682927 0.304939249901964 0.303375032840629 4 4 - 7491620 7492163 7491881.909 7491380 7492873 - gene protein_coding_gene FALSE TRUE AT4G12730.1 FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (FLA1) [Arabidopsis thaliana] (TAIR:AT5G55730.1); similar to putative fasciclin-like arabinogalactan protein FLA2 [Trifolium pratense] (GB:BAE71278.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.36705074539269 -10.5380073582771 4.79892037267864e-07 0.00736250363576357 10.4570713583163 11.1985937165604 -1.36705074539269 0.167084880847338 AT1G11850_at 6.0939598858348 6.0881483183674 2.72496300491953 2.46471285212095 4.27934450957093 3.93648622246642 5.78213490949124 5.1779793425563 6.59427781260442 6.05710402901464 7.06564041080585 8.62203980957138 5.78418897592833 5.87976828221866 8.11649574740478 6.45318206019011 3.86000048806522 5.61857378136913 6.42287713283184 0.293385884791802 0.296807557465119 0.328191349628781 0.320218254732673 0.285547024827108 0.294916581824315 0.285608358855153 0.288856842181575 0.288143531695421 0.280990441916041 0.285268935765715 0.306623760114455 0.280170919563584 0.280170919563584 0.312134549218966 0.283514932331254 0.300840792152814 0.287542103054389 0.281939826765005 1 1 + 3999240 3999518 3999333.273 3999198 3999875 + gene protein_coding_gene FALSE TRUE AT1G11850.1|AT1G11850.2|AT1G11850.3|AT1G11850.4 |unknown protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001190956.1); similar to PREDICTED: similar to CG5812-PA [Tribolium castaneum] (GB:XP_969409.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Os07g0688700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060703.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1); similar to putative glycine-rich cell wall protein precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC21356.1)||similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: similar to keratin 7, partial [Gallus gallus] (GB:XP_001236709.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) -1.18363954858288 -10.5344072657149 4.8153199178979e-07 0.00738718228604717 10.4550992415097 10.9600023902965 -1.18363954858288 0.128378065223189 AT4G01080_at 3.79504195514592 4.39136872749399 3.92759149954994 4.23809455578392 2.89532989224934 3.38642082079381 9.29815164417707 9.4158250827774 4.03496463614042 7.0554973006086 5.7204693063071 6.06489376683053 6.66431643275298 6.22674183461424 5.92819197727162 7.29536488940348 7.1522057374035 6.26229672625738 6.35817993319583 0.270160906401097 0.2629297110682 0.263351003375549 0.265558285891043 0.264595206546254 0.268188283583339 0.267708960839058 0.267656099642224 0.264821118227788 0.26484591234439 0.266593020640865 0.262405636980753 0.260797890692709 0.268762729293721 0.267891232853588 0.260797890692709 0.274757685123599 0.271989726551356 0.268830430009827 4 4 - 466762 467195 466986.182 466391 468294 - gene protein_coding_gene FALSE TRUE AT4G01080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01430.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.25757076654876 -10.4980229950961 4.98451298195346e-07 0.00764424910912382 10.4351047250965 11.2837400424981 -1.25757076654876 0.145513670914210 AT1G61500_at 3.74430547885671 3.85214628785569 2.21236562681887 2.18742577722081 2.36099453968388 2.45377063172032 3.82156927669277 3.13848934635756 3.54699356099505 4.09144893185213 3.05844734147246 3.82383037431183 2.8727014501881 2.93681201989346 3.41265172267311 3.19182009219663 2.57507117240351 2.89667406784130 4.47019923932789 0.20447884149058 0.205847573558568 0.219523750078105 0.208959960659179 0.205441884188967 0.211779864064554 0.201653637126180 0.20213618788104 0.201801713205203 0.201823366277467 0.200716026316695 0.205033092763263 0.204221949431663 0.199965458936374 0.195788137853869 0.200585814492600 0.200134450150906 0.195788137853869 0.216945749536419 1 1 - 22693403 22693657 22693497.091 22693394 22696546 - gene protein_coding_gene FALSE TRUE AT1G61500.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61440.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.13785066709109 -10.4164142553026 5.38790925996918e-07 0.00826074247738475 10.3898352739674 6.53749084107461 -1.13785066709109 0.120823542914800 AT3G12920_at 8.84092388735854 9.0701403229609 7.93257564402433 7.65267907881297 7.7299141763047 7.6634861105766 9.24423960338918 9.43136736666355 9.46950805454818 9.50274336501077 9.52114728797843 9.61245508011501 9.00086752355171 9.13097485771755 9.37767183901262 9.41083876548648 8.18429734408868 8.3933512179649 9.79256889871006 0.155020379290731 0.148773678162742 0.156899431186491 0.156400874280993 0.158628517052625 0.150289991640081 0.142942154550869 0.145792039121570 0.14774923093768 0.14663655180356 0.142942154550869 0.142942154550869 0.143719767786999 0.144328287150227 0.143312560464757 0.142942154550869 0.161095395997907 0.153214315689513 0.146244385091021 3 3 - 4122135 4122491 4122322.182 4121890 4123515 - gene protein_coding_gene FALSE TRUE AT3G12920.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G79110.2); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE88778.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.955663496298485 -10.4017410977966 5.46412245164873e-07 0.00837704613062267 10.3816334128090 17.7792777382176 -0.955663496298485 0.0714176594026055 AT4G31120_at 5.65383096087467 5.87338938686315 5.28743979461332 5.41618019708002 5.15312890825125 5.10427867354194 6.04513693625298 6.3735569047679 5.34557090776217 5.10451481669091 3.80327675461721 4.06504368307628 4.14974822552291 3.91908759048735 4.08002928560111 4.81659983321788 4.43153800391686 4.04522280502431 5.52807866421147 0.222098680654608 0.209243338624001 0.220402840724255 0.217830878370609 0.208103140804031 0.208271536026525 0.219246084914844 0.209599047739893 0.235307904580305 0.209985926691882 0.225595217019267 0.213356494599743 0.219659231610629 0.208526401864609 0.209497715758438 0.207449566513594 0.217316688964319 0.219893103698347 0.208655688912463 4 0|4 /|- 15132204 15132802 15132494.125 15132017 15136643 - gene protein_coding_gene FALSE TRUE AT4G31120.1|AT4G31120.2 Skb1 methyltransferase family protein similar to Os02g0139200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045843.1); similar to SAM (and some other nucleotide) binding motif; Skb1 methyltransferase [Medicago truncatula] (GB:ABE80388.1); contains InterPro domain Skb1 methyltransferase; (InterPro:IPR007857) -0.954229088678284 -10.3543455126270 5.71838618756644e-07 0.00876342683244557 10.3550094879366 10.3583042547329 -0.954229088678284 0.0723993405062421 AT1G12750_at 7.02629702541779 6.55447892718576 5.15739576775828 4.86452707299076 5.96709256406677 5.96051275128044 7.34184771427576 7.22767037675014 7.4261951773634 7.7897354968579 7.38724160080078 8.01616982747039 7.13441454124112 7.17021638177732 7.24803691202426 7.10093084637415 6.61451828334446 7.07905746839969 8.03481395645153 0.170678855855273 0.165863040079769 0.174123069120672 0.177592585428234 0.164819703660988 0.174580925773943 0.169912053226892 0.167538554421883 0.166702227198113 0.174507908937728 0.161357933176704 0.177461310023658 0.163551280418760 0.166990433380977 0.175298202076861 0.168703810029146 0.176022210404220 0.161591514187850 0.16784260798787 1 1 - 4345117 4345829 4345436.545 4344983 4348326 - gene protein_coding_gene FALSE TRUE AT1G12750.1|AT1G12750.2 rhomboid family protein similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -1.04080822471427 -10.3537980582945 5.72139699012083e-07 0.00876746874766117 10.3547007868574 13.7470134964174 -1.04080822471427 0.0981182018365755 AT3G09600_at 3.31491399889448 3.25354665614740 3.35824447628779 2.91740818975169 2.82989952466872 2.83442049968023 5.4107121090555 5.10596871176773 3.67252114554407 4.09627162289587 2.99664841949102 3.01726072057296 3.21535786660841 3.47970976965816 2.52829360562740 4.26946212402978 3.51570162132218 3.15113487738017 4.31084428495213 0.157055873335954 0.154637748049712 0.158417090647469 0.158506661037356 0.157093409181204 0.160214883732382 0.165447314233959 0.162581821696287 0.156817694377368 0.156574558211231 0.155951813049188 0.155865567816593 0.154693443487853 0.157176773905662 0.157530547965135 0.160805244384692 0.158735037895608 0.159924775813003 0.159181971700117 3 3|0 +|/ 2946483 2948181 2947212.933 2946411 2949000 + gene protein_coding_gene FALSE TRUE AT3G09600.1|AT3G09600.2 myb family transcription factor|DNA binding / transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02840.3); similar to MYB transcription factor MYB118 [Glycine max] (GB:ABH02853.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G02840.2); similar to MYB transcription factor MYB118 [Glycine max] (GB:ABH02853.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.02057087762347 -10.3253198837777 5.88041027926275e-07 0.00900996462988639 10.3386052110934 7.27726017580683 -1.02057087762347 0.0933519736280339 AT4G03500_at 1.42560693446133 1.61299563579650 2.11561324608456 1.8379748401262 1.36694455767477 1.03780774446999 4.8521031697539 4.46251341720758 1.46433401174989 3.34137097466217 1.43550806161684 0.301252568857578 1.75113159454952 2.40600372803413 0.987795892115402 2.54745465133094 2.33236805620195 2.27075768755217 2.34339701690180 0.214102592771727 0.218121981810296 0.222279979560351 0.22084414316145 0.215063986140566 0.226911815773168 0.223900198925939 0.235888242312842 0.216414843133586 0.229814976299826 0.214102592771727 0.21996039815139 0.214525423065136 0.214102592771727 0.217854780095269 0.218402488847537 0.216563439396232 0.214102592771727 0.224246889001946 4 4 + 1556056 1556489 1556294 1553090 1556569 + gene protein_coding_gene FALSE TRUE AT4G03500.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G03460.1); similar to Ankyrin [Medicago truncatula] (GB:ABE77954.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -1.06385983164413 -10.3016371214525 6.01629590900662e-07 0.00921756696218905 10.3251642278001 4.40747895876532 -1.06385983164413 0.105592962472267 AT2G10940_at 10.0854959246034 10.6580344049879 4.79146156012965 5.08436604727703 8.76948839776468 9.2897064662949 9.40789093328723 10.1982102162877 11.7253105350352 10.9778902910781 12.5414479426199 12.2315481459402 11.7081475817329 11.4920791765833 12.4386915800447 11.0166818301053 9.03321781269686 11.8383151426245 11.5387315355427 0.129699677988252 0.129699677988252 0.188761674259175 0.171848111713330 0.136826029073777 0.143835161785132 0.135205460212432 0.135157934931937 0.141347145763889 0.131297742603656 0.133538251208884 0.132406064141827 0.133900956771097 0.13515068724036 0.133030942995607 0.129699677988252 0.14675007442438 0.129699677988252 0.132728297710700 2 2 - 4318260 4318598 4318432.182 4317494 4319185 - gene protein_coding_gene FALSE TRUE AT2G10940.1|AT2G10940.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71274.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.49005677713341 -10.2884681335668 6.09332495444789e-07 0.00933436449771871 10.3176682846004 20.0113285465434 -1.49005677713341 0.197981248567749 AT1G29720_at 7.32416797805874 6.88430334291679 6.30788784986224 5.73004477763242 6.25726844800618 5.77683783996642 8.41333596594363 7.9821339452981 9.40955208427263 9.12099156686665 8.41486271827485 9.08667325278738 7.64209679043459 8.49277409537456 8.09314477178189 8.02838308599995 7.25049773177886 8.12064263012032 8.99577444209278 0.183560792523286 0.181062980200451 0.18450423668287 0.187711964245305 0.182275602825900 0.185465648956700 0.181476029715696 0.185072608908892 0.183292680902002 0.182895314875503 0.175879396083644 0.175847601750906 0.179473789127764 0.180400488027679 0.174817620811632 0.175409214360808 0.204173259003176 0.182236377439661 0.18063222133157 1 1|0 -|/ 10393932 10394611 10394157.778 10393783 10395589 - gene protein_coding_gene FALSE TRUE AT1G29720.1 protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G29740.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.33364027951456 -10.2405596046460 6.38269810313981e-07 0.00977510214495862 10.2902649965338 15.4927843929504 -1.33364027951456 0.168151105848903 AT3G19450_at 8.5443390661404 8.8530338358097 8.0289422295743 8.16049339828148 7.74033187983999 7.60697685200685 9.729974679051 9.6958167544146 9.19244501061383 9.50994949707326 8.50267496033538 9.26538433289185 8.77174211413147 9.33303966725477 8.78540547088851 9.1143200343827 8.51220194125762 8.69842067765824 9.42729685358702 0.176975740758154 0.158815965573111 0.169720179548433 0.173972460196597 0.162781617062763 0.171232788071868 0.164992617101406 0.163919309842619 0.177925257082366 0.160012055806354 0.162497411979037 0.157317141183918 0.167256330366866 0.156449071998121 0.164831432273410 0.156655010507473 0.165775606499801 0.165813759212245 0.159274976875912 3 3|0 +|/ 6746327 6746981 6746593.6 6744604 6747220 + gene protein_coding_gene FALSE TRUE AT3G19450.1 CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. Identical to Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) (CAD) [Arabidopsis Thaliana] (GB:P48523); similar to CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34230.1); similar to cinnamyl alcohol dehydrogenase [Ocimum basilicum] (GB:AAX83108.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.912635065584791 -10.1944447800583 6.67534432713907e-07 0.0102212872337153 10.2636890702735 17.6697198053605 -0.912635065584791 0.0627662605061266 AT2G43200_at 4.56162264984808 5.00427540403507 3.37681729993146 3.47602426854061 4.23033112223463 4.09076882752766 5.32704748832903 4.90033452557625 5.21545669698627 5.2013622017163 4.92952213602437 4.39668229273249 5.14413165999976 4.39758067317129 4.43216072011632 4.45468078083557 4.19836284831898 4.1190281409834 6.06572550589157 0.223138228542218 0.227322884454024 0.223661891240149 0.228364469047916 0.220038104886858 0.234759942006159 0.220741860082854 0.23052913826546 0.229698002009028 0.233933128149274 0.220038104886858 0.223616726453381 0.232378989312056 0.222393808348457 0.223161857196624 0.221653584085155 0.233912114178722 0.241362479927275 0.231377255024196 2 2 + 17966869 17967478 17967101.545 17965307 17967613 + gene protein_coding_gene FALSE TRUE AT2G43200.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Os10g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065036.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Os06g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056546.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.06999872453190 -10.1786502715659 6.77889244337987e-07 0.0103784843308146 10.2545416234695 9.37250276061326 -1.06999872453190 0.110449699926187 AT1G56050_at 6.38651568760922 6.77414131476755 4.75325266689146 5.24036618281729 5.17619193633189 5.18622390055377 8.74011973659523 8.53137097986769 6.04576452660255 7.17383615915737 6.26301298027425 7.96711141419771 6.5861817360613 6.65669646122199 8.5881057275866 6.20192870128038 6.86541844718435 6.17296382626695 6.45668128585176 0.218352645209666 0.216730362946226 0.220012536557960 0.220372244821507 0.214690007644096 0.224576914604412 0.219418678578796 0.220198270162587 0.220451848157823 0.220473724412033 0.214227209267390 0.214086807829132 0.214759390604331 0.214086807829132 0.217234218231553 0.214086807829132 0.232715848279284 0.214480400077737 0.214086807829132 1 1|0 +|/ 20968749 20969813 20969091.9 20967384 20970006 + gene protein_coding_gene FALSE TRUE AT1G56050.1 GTP-binding protein-related similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G30580.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK09228.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Protein of unknown function DUF933; (InterPro:IPR013029); contains InterPro domain Conserved hypothetical protein 92; (InterPro:IPR004396); contains InterPro domain TGS-like; (InterPro:IPR012676) -1.08255575175301 -10.1778230454939 6.7843634395682e-07 0.0103861819896349 10.2540618961081 13.0842418351608 -1.08255575175301 0.113639068065243 AT1G12220_at 4.74397393622233 4.40912247087260 3.5486171385711 3.22516455193413 3.68986406154906 3.71239055435566 3.54636709791749 3.61282006313113 3.96654995146323 3.59745234244995 2.56980734642858 2.44418263690309 2.69584110256587 2.21227968587372 2.15136859971523 2.0664100546651 2.91991119924849 2.37110126178466 3.90587794162043 0.241733265867325 0.248403112143182 0.250181340411656 0.245258720948098 0.242950962751820 0.256355785990578 0.247702945357059 0.251782654015966 0.259023523759607 0.242354519601672 0.246573354896947 0.261435026733294 0.262267786743158 0.244053694616368 0.245292425735244 0.24048192460164 0.253525810228093 0.251134657360971 0.249269346852679 1 1 + 4147117 4147640 4147338.818 4144933 4147815 + gene protein_coding_gene FALSE TRUE AT1G12220.1 RPS5 (RESISTANT TO P. SYRINGAE 5) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. Identical to Disease resistance protein RPS5 (Resistance to Pseudomonas syringae protein 5) (pNd3/pNd10) (RPS5) [Arabidopsis Thaliana] (GB:O64973;GB:O81402;GB:O82098;GB:O82100); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12290.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12280.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62353.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62352.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.964246245689922 -10.1603834294804 6.90082359549462e-07 0.0105630906776236 10.2439334888877 6.9371180581905 -0.964246245689922 0.0814774216200335 AT3G17609_at 4.63160425649162 4.49311922673868 4.68391950123489 4.39500267385476 2.43161542182577 2.25176481450262 6.06203101369242 5.21918300494292 3.92143349538303 3.98424565722924 2.71003314665624 3.50063088791633 3.26719209947413 3.03757289371299 2.92012499452154 4.45875640360301 3.77168157530796 2.84105782882652 4.72379526877736 0.221954354117078 0.223329503055933 0.227613903544001 0.223754256317939 0.223645522999724 0.226376907321750 0.233128150558408 0.230098035790780 0.234802469771367 0.228149288938042 0.225429286120614 0.221444768919030 0.224575820669024 0.219483864345501 0.226595690657309 0.219483864345501 0.222330415676989 0.224780373332901 0.223646850475728 3 3|0 +|/ 6023996 6024548 6024297.5 6023872 6024704 + gene protein_coding_gene FALSE TRUE AT3G17609.1|AT3G17609.2|AT3G17609.3|AT3G17609.4 HYH (HY5-HOMOLOG); DNA binding / transcription factor|HYH (HY5-HOMOLOG) Identical to Transcription factor HY5-like (HY5 homolog) (HYH) [Arabidopsis Thaliana] (GB:Q8W191;GB:Q8LB41;GB:Q9LUN6); similar to HY5 (ELONGATED HYPOCOTYL 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11260.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE88841.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -1.27867617549472 -10.1491512497495 6.97697642297374e-07 0.0106789601130036 10.23739521313 8.03263300710157 -1.27867617549472 0.159115274474418 AT3G47420_at 7.1408833842 8.01684151090985 8.1229468126092 8.24386389202001 7.41293151225282 6.5428070252691 9.4608615347083 9.74587328168567 8.38956811069946 8.94934340809372 5.73652180234812 6.222231381162 7.19920704527587 6.4432549245487 4.99329867082135 8.4486689066167 7.84824897555037 6.19434122264265 9.02433529184528 0.246906932409562 0.237572392769675 0.25029407090915 0.239940428755188 0.246469330517218 0.249685341830070 0.250862082946358 0.251119196247770 0.254698063462248 0.240848653975144 0.241083530387436 0.242245841328327 0.240672970202263 0.246539560043751 0.245150348933774 0.242572767552534 0.253582916700501 0.237572392769675 0.237609486501957 3 3 - 17483577 17483951 17483794.909 17483327 17486243 - gene protein_coding_gene FALSE TRUE AT3G47420.1 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative similar to transporter, putative [Arabidopsis thaliana] (TAIR:AT4G25220.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); similar to Os04g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053515.1); similar to putative glycerol 3-phosphate permease [Zea mays] (GB:AAS82603.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -1.58125246904847 -10.1221294322032 7.16393601262673e-07 0.0109629712801227 10.2216175720424 15.7976113957070 -1.58125246904847 0.220281110848832 AT1G02870_at 6.37140739723357 6.28738861817937 4.95080240552386 5.15575525404889 5.44569462455904 5.48715262799258 5.66930788738325 6.19341859806983 5.06854450143065 4.91340979132584 3.97960799352051 4.04652697471168 3.65326404684477 3.66615372770506 4.38754559344148 3.79346667077224 3.56388004172196 4.03577350911196 5.17992261151502 0.227052186419164 0.232533225892005 0.246135738778465 0.233371273563731 0.238460758427356 0.257256594389111 0.240256646226935 0.235579037547811 0.238770864390235 0.225207239506492 0.227192816630321 0.225207239506492 0.228274854592346 0.245618746893399 0.225207239506492 0.230444916257121 0.237868676307583 0.227690880860154 0.232355898563050 1 1 - 637458 638548 638238.727 637214 638677 - gene protein_coding_gene FALSE TRUE AT1G02870.1 similar to hypothetical protein MtrDRAFT_AC161032g9v1 [Medicago truncatula] (GB:ABE85046.1) -1.01685552277360 -10.0934883652978 7.3680394264392e-07 0.0112731003224520 10.2048198657666 10.1674840705334 -1.01685552277360 0.098728501447517 AT1G66350_at 5.1963663996926 5.52870520053486 2.820916962015 2.84835069316236 3.18384071395992 3.29258365049755 4.01786408476370 4.04309013193391 5.19871074363356 4.11258502541112 4.90276775254913 5.7439313297281 4.70969378652786 4.65573635383232 5.26649825734463 4.87669261495124 3.53316052890717 5.06876943766332 5.6183293713629 0.240874035999138 0.240874035999138 0.251526706406890 0.242993923617106 0.248465727120892 0.244893170221103 0.248374602685732 0.240874035999138 0.263367704958690 0.252106627977528 0.247625950230079 0.240874035999138 0.246154421373446 0.255537840546394 0.247204476347824 0.240874035999138 0.240874035999138 0.240874035999138 0.240982320001996 1 1 + 24753004 24753490 24753235.273 24751858 24753705 + gene protein_coding_gene FALSE TRUE AT1G66350.1 RGL1 (RGA-LIKE 1); transcription factor Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. Identical to DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein) (RGL1) [Arabidopsis Thaliana] (GB:Q9C8Y3;GB:O65367); similar to RGL2 (RGA-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G03450.1); similar to DELLA protein [Malus x domestica] (GB:AAY56750.1); similar to GIA/RGA-like (GB:AAY28970.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.89598445255189 -10.0631022061729 7.59148485972828e-07 0.0116111760929544 10.1869143091158 8.77706371514857 -0.89598445255189 0.0608559877973732 AT4G32870_at 7.63710266022425 8.18195436261261 6.42431770649658 6.69616303446707 4.70039366791782 4.57323797178053 6.79065122858729 8.19953906142875 6.23841992302147 5.97246271334823 4.23418901996465 4.48958561565045 4.59402865600497 4.69675689135263 3.68514569991064 4.14231011249947 4.52739747347511 4.84100428491004 5.54779409105696 0.216803967215891 0.219937176234939 0.222848126029913 0.230068650900996 0.217791639288435 0.223148750360077 0.2232227297351 0.223307209162391 0.223726221380216 0.215801493032721 0.215801493032721 0.217596884565971 0.219870299309433 0.220782052328859 0.215801493032721 0.217418466802645 0.222885043929558 0.222031166916916 0.215801493032721 4 4 + 15862217 15862586 15862392.364 15862147 15862745 + gene protein_coding_gene FALSE TRUE AT4G32870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25770.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78384.1); contains domain Bet v1-like (SSF55961); contains domain no description (G3D.3.30.530.20) -1.81102021148447 -10.0182436195940 7.93487668389616e-07 0.012134013425014 10.1603208690842 11.8108505258710 -1.81102021148447 0.266520855480974 AT1G09750_at 8.9669262921884 9.15025166929694 3.22811985986025 4.0306538773448 6.66925654010166 6.74451643744697 7.08965629049655 7.56062644061062 8.65018466049115 7.98490602583974 9.50719876133445 9.98090397564961 8.34002339558564 8.33689618934431 10.2971434815601 8.01457969459972 6.5555969219178 9.15010053681756 8.33517797669384 0.188188097394405 0.187986954451685 0.233473239444661 0.232891109067043 0.192368654737872 0.203855056208049 0.181803880729711 0.185045624383948 0.188011050849252 0.186413436755571 0.181803880729711 0.183960305423822 0.185883396381811 0.188497724530426 0.189099847495626 0.183210544689662 0.206156784424132 0.185416300622391 0.186912928142184 1 1 + 3158328 3158933 3158666.727 3157503 3159147 + gene protein_coding_gene FALSE TRUE AT1G09750.1 chloroplast nucleoid DNA-binding protein-related similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71208.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -1.28717300626674 -10.0112407798477 7.98998474847122e-07 0.0122166866804125 10.1561521134199 15.2281150545563 -1.28717300626674 0.164642753582110 AT4G23290_at 9.21634787674448 9.58463959126852 8.15031895423978 7.68024869653654 8.91990298083941 8.58765545446174 10.8673443604745 10.6321130058060 11.0097985671396 10.8573397401259 10.5569513080656 10.6165609413329 10.4171609501567 10.4550871190799 10.3473301440362 10.6690006192476 10.0812326402126 10.3545009439832 10.883554903563 0.173920591992598 0.156646352634270 0.180960582431364 0.184994352449072 0.162682824246744 0.167383847321276 0.161715435029799 0.162094753757126 0.172392099205834 0.164936152085346 0.171200313769202 0.156646352634270 0.159582527017207 0.166878398647293 0.168056146044897 0.158300372743750 0.177872019721663 0.175899505442588 0.162051449149406 4 4 - 12177957 12178458 12178130.375 12177748 12180836 - gene protein_coding_gene FALSE TRUE AT4G23290.1|AT4G23290.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11480.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.11012467036626 -10.0029671918198 8.05562748222822e-07 0.0123162488575787 10.1512208544932 19.8818842751500 -1.11012467036626 0.125070407217400 AT1G53160_at 6.87965476134522 6.27181695694806 7.52488326463735 7.78835603524152 8.98744093677544 8.43616963267647 9.4485926952210 9.40943794677327 9.78034501013008 10.0734109347449 7.65583159238767 6.05429328716722 7.08689635130672 7.21905199695854 5.8583633844567 7.19786603938656 7.9734054841595 6.44537201829691 8.78371158566319 0.244148401195792 0.239090332060378 0.247386210318892 0.232350785403471 0.235242627886461 0.244082477380638 0.238413235237679 0.237601314988895 0.237772178694492 0.235467080967301 0.235345246339427 0.236439380348048 0.240696270202116 0.239287358860434 0.245063666845268 0.230341383945976 0.241852747517628 0.244175598585773 0.232299977512981 1 1|0 +|/ 19810261 19810706 19810439 19810087 19811276 + gene protein_coding_gene FALSE TRUE AT1G53160.1|AT1G53160.2 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor|SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. Identical to Squamosa promoter-binding-like protein 4 (SPL4) [Arabidopsis Thaliana] (GB:Q9S7A9;GB:Q9SMX8); similar to SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G15270.1); similar to Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 (GB:1UL4); contains InterPro domain SBP; (InterPro:IPR004333) -1.2138003068268 -9.99075821313415 8.153562719316e-07 0.0124643513290184 10.1439320509786 16.3343977934245 -1.2138003068268 0.149300933407350 AT3G48500_at 4.76697017129237 5.21176422048447 4.21506238983529 4.52213595040245 4.07562111891348 4.16727047171120 5.22882062243123 4.86372132083899 4.12216122283802 4.83903030561986 2.94179237961079 3.34600442951536 2.96780852651289 2.80528573289183 3.97287635371623 3.60678549162994 3.83674978875624 3.14012513561027 5.08062214961912 0.232751875487294 0.221980460410788 0.2259134447316 0.225174352604882 0.231286687794684 0.228797560325264 0.228547229085663 0.221980460410788 0.227393246405821 0.221980460410788 0.233228601819365 0.226048820860998 0.2339001673896 0.239234569423783 0.221980460410788 0.228723696756512 0.221980460410788 0.235993550904825 0.223201725147467 3 3|0 +|/ 17975490 17976354 17976055 17973148 17976598 + gene protein_coding_gene FALSE TRUE AT3G48500.1|AT3G48500.2 PDE312/PTAC10 (PIGMENT DEFECTIVE 312); RNA binding|PDE312/PTAC10 (PIGMENT DEFECTIVE 312) similar to B1065G12.12 [Oryza sativa (japonica cultivar-group)] (GB:BAB90530.1); similar to CONSTANS interacting protein 5 [Lycopersicon esculentum] (GB:AAS67373.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029)|similar to B1065G12.12 [Oryza sativa (japonica cultivar-group)] (GB:BAB90530.1); similar to CONSTANS interacting protein 5 [Lycopersicon esculentum] (GB:AAS67373.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -1.06311134031236 -9.98228101077257 8.22232129884509e-07 0.0125686403374146 10.1388627323425 8.6353123028084 -1.06311134031236 0.113984188292698 AT1G75180_at 8.34179443084185 8.38692392698438 7.48208063432205 7.2634493023823 7.94868173818075 7.7703900358366 9.06421498313652 8.9402111010091 8.76503051580055 8.47996079245909 8.20008727188261 7.98243679943475 8.23691868105032 7.86335080227005 7.98820778350562 8.20618858174313 7.98981466195453 7.84913574612528 8.90127505706013 0.169703829183514 0.166440329943425 0.171216036171219 0.176068070556373 0.179956734946973 0.172439871532949 0.177651218808606 0.174727859901855 0.175665340579474 0.165864913260288 0.166177982032358 0.165346386888119 0.165991809662860 0.173427957917492 0.170304034372750 0.164546497769669 0.17285039335434 0.170515191033526 0.169591990078529 1 1 - 28219838 28221080 28220687.091 28219497 28222462 - gene protein_coding_gene FALSE TRUE AT1G75180.1|AT1G75180.2|AT1G75180.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65010.1); similar to Os03g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051432.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82722.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996) -0.871520131795005 -9.97473879939443 8.28402416146627e-07 0.0126613025283851 10.1343467365774 16.5271881004712 -0.871520131795005 0.0538979089755983 AT3G28840_at 1.29833080484353 1.12452153665799 1.08676713240195 0.825779887549465 0.614205358395065 0.813218872566554 2.97903619517616 3.40178138119247 1.48313036041325 2.22830694908224 1.06187177021120 0.670112414705115 0.815088289606773 0.582058050192747 1.34056542612333 0.826277441385673 1.34066375725360 1.47981022429523 1.20506808572601 0.234547108971791 0.230998025079476 0.234193356975870 0.230134882012435 0.229414485827519 0.238286838847938 0.245875772580082 0.272115314531234 0.240334693401151 0.234714325308333 0.230569878880609 0.229414485827519 0.241527238258576 0.229414485827519 0.232130432572173 0.231758114405461 0.234947248212155 0.238738931252248 0.235419678069127 3 3 + 10840424 10840939 10840697.455 10839646 10841183 + gene protein_coding_gene FALSE TRUE AT3G28840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28780.1); similar to EBNA-1 [Human herpesvirus 4] (GB:ABB89251.1); contains InterPro domain Protein of unknown function DUF1216; (InterPro:IPR009605) -0.995101938379036 -9.92521441998194 8.70185064678532e-07 0.0132894663077705 10.1045572642936 2.844650672829 -0.995101938379036 0.097379794493994 AT3G50240_at 5.04224007883059 4.73055026590898 2.91333200308087 2.77844959517261 3.69651223406019 3.589700866883 4.22352054372286 4.09173913043745 5.46413624445374 5.63533261437244 5.28715335259972 6.55069073891347 4.7613161489201 5.01499669442456 5.88241121084234 4.491008258638 4.0739482335475 4.48807205712628 5.64975500032098 0.235809071258354 0.232902468851742 0.232501275274204 0.237463995940103 0.23941650637539 0.241860913135965 0.230230011580489 0.234930504782202 0.245136120069407 0.230720117972294 0.235815578615206 0.233482353099241 0.239937345427665 0.244566677676195 0.235639176993141 0.230230011580489 0.250647341332993 0.231204351089957 0.2468225888126 3 3|0 -|/ 18634369 18635119 18634658.9 18634244 18639864 - gene protein_coding_gene FALSE TRUE AT3G50240.1 KICP-02; microtubule motor Encodes a kinesin-related protein. similar to chromosome-associated kinesin, putative [Arabidopsis thaliana] (TAIR:AT5G60930.1); similar to FRA1 (FRAGILE FIBER 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G47820.2); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72688.1); similar to Os09g0114500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062580.1); similar to putative KIF4 [Oryza sativa (japonica cultivar-group)] (GB:BAD16508.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.89594443138251 -9.92270081623682 8.72365726596539e-07 0.0133210246451292 10.1030389812435 9.20914269305817 -0.89594443138251 0.0656967136658266 AT3G52750_at 8.35208949722655 8.45263317724849 7.21906501402086 6.99737901438797 7.4085065755014 7.31936640213401 9.15140329363985 9.13944014872611 8.85940363233663 9.3539866966908 8.95918100675743 9.34859145591987 8.67331158473373 8.73419287526882 9.20197591782321 9.18287449365139 8.06418128490142 9.21703094890107 9.03036389724361 0.138565997469748 0.144522158910845 0.157505928478365 0.170368563622796 0.160647075094916 0.146042979408238 0.138511535666408 0.147911330603934 0.154455858450916 0.142961528668691 0.139447885194246 0.13751676922435 0.140641453759106 0.14220898366948 0.144722520342342 0.13751676922435 0.163915996598049 0.144498504191358 0.142565328160001 3 3|0 -|/ 19560863 19562189 19561379.333 19560639 19563992 - gene protein_coding_gene FALSE TRUE AT3G52750.1 FTSZ2-2 (FtsZ2-2); structural molecule Nuclear gene that encodes a plastidial division protein (FtsZ2-2). similar to FTSZ2-1 (FtsZ homolog 2-1), structural molecule [Arabidopsis thaliana] (TAIR:AT2G36250.2); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE77845.1); similar to FtsZ-like protein [Nicotiana tabacum] (GB:CAC44257.1); similar to chloroplast FtsZ-like protein [Nicotiana tabacum] (GB:CAB89288.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.848198120230793 -9.92232575948455 8.72691611819712e-07 0.0133251282208752 10.1028123845318 17.0069448177365 -0.848198120230793 0.0449085359761614 AT1G64500_at 8.09741611673159 8.23649597065742 8.84720793676464 8.6544878220258 8.5887874182008 8.28750292222125 10.3654304760777 10.3822065623422 10.4579549334449 10.6916037947563 9.19055573488 8.77203792209954 9.906427177601 9.4652932094584 8.66753764215084 10.1905449329500 10.2864832551180 9.61182841396748 10.7415270059861 0.139544957393942 0.129406824035474 0.133206112852455 0.132595870078084 0.137590314199659 0.135018207303991 0.136260652273287 0.134082903703229 0.132168875653419 0.133632584403251 0.128031454754687 0.130816769384152 0.127542175893884 0.127542175893884 0.129005086716307 0.130010124910634 0.134232880864608 0.127644884936338 0.135261001190959 1 1 + 23957503 23958002 23957752.182 23956896 23958155 + gene protein_coding_gene FALSE TRUE AT1G64500.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Medicago truncatula] (GB:ABE80146.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.89745706600835 -9.91658643828523 8.77694959862054e-07 0.0134006466471738 10.0993431768709 19.0032921268396 -0.89745706600835 0.0664714729555346 AT3G21750_at 6.648087865945 7.09833483044746 5.46926320269381 6.21043299982103 5.6340002470322 5.58395740196981 7.04430248675726 7.34246505093332 6.17424765359524 6.53422674251998 4.48789606560128 4.75269519161815 4.59739200121763 4.52583663971383 4.69780167085664 5.76976934537127 5.20114774705266 5.44303829602588 5.63759482122783 0.212517966492529 0.210844953867140 0.210877051805429 0.208972389574235 0.206531278751206 0.214374139618964 0.209596561155126 0.215986826701501 0.219026778184753 0.215391482172766 0.218221952081403 0.205103248397437 0.210148404067412 0.209201476722095 0.207983571941699 0.209939181685337 0.208301428340820 0.213989672479390 0.207942956831521 3 3 + 7665419 7665933 7665634.091 7664352 7666202 + gene protein_coding_gene FALSE TRUE AT3G21750.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21760.1); similar to glucosyltransferase NTGT3 [Nicotiana tabacum] (GB:BAB88934.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.24489669087020 -9.88765505064061 9.03393767981447e-07 0.0137912092620048 10.0818064631538 11.9037572734316 -1.24489669087020 0.158933557590586 AT2G24120_at 4.81835714145778 5.00940927046255 4.42437764974734 4.41708171295765 4.06502004947114 4.22459408760310 4.55741148613281 4.76295368132266 3.50805467484939 4.22145776328455 2.4927356482269 2.80084498712429 3.130621564522 2.51808987641621 2.96680551618474 2.98444212114085 3.25185536356559 2.62254832874848 4.4753694759798 0.266776582327812 0.261780634389626 0.251899020333488 0.267874284124869 0.254647047603493 0.255201650382512 0.270516503542908 0.266788134641256 0.2565476413904 0.264276007987591 0.255478568442379 0.251210146147727 0.261741493848847 0.262104807491548 0.256689864973139 0.252452656725483 0.260217570467802 0.259452153598913 0.252085348269521 2 2|0 -|/ 10256504 10257761 10257179.1 10255995 10261721 - gene protein_coding_gene FALSE TRUE AT2G24120.1|AT2G24120.2 PDE319/SCA3 (PIGMENT DEFECTIVE 319, SCABRA 3); DNA binding / DNA-directed RNA polymerase Identical to DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (RPOT3) [Arabidopsis Thaliana] (GB:O24600); similar to DNA-directed RNA polymerase, mitochondrial (RPOMT) [Arabidopsis thaliana] (TAIR:AT1G68990.1); similar to DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana] (TAIR:AT5G15700.1); similar to DNA-dependent RNA polymerase [Spinacia oleracea] (GB:CAC80139.1); similar to DNA-directed RNA polymerase 3B, chloroplast precursor (T7 bacteriophage-type single subunit RNA polymerase 3B) (NictaRpoT3-tom) (GB:Q8L6J1); similar to DNA-directed RNA polymerase 3, chloroplast precursor (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C) (GB:P69242); contains InterPro domain DNA-directed RNA polymerase, bacteriophage type; (InterPro:IPR002092) -0.863282782764628 -9.82910925777326 9.57925616361962e-07 0.0146198607569163 10.0460686956383 7.99204408345056 -0.863282782764628 0.055879673669914 AT1G19510_at 6.83492717206029 7.35361670231161 5.13061725016819 5.68296934216138 5.69667181961052 5.7021171344046 6.13611709699709 6.84393413534228 5.05318069250093 5.20775711294152 3.05072059967355 3.27796642565232 4.72408559421587 4.29549825555177 2.58089120628976 5.12705566844868 4.41053502639988 2.77422917478281 5.35165056255935 0.310190439889066 0.317740354972055 0.3118480410197 0.311958264591196 0.310449781507892 0.31223089620003 0.315250874920327 0.312401100910512 0.319764013307781 0.310190439889066 0.318354676568916 0.325011012469684 0.310190439889066 0.313378502934111 0.334244514327731 0.310190439889066 0.316538544866199 0.337524390452862 0.310823191048053 1 1 - 6757045 6757257 6757145.091 6756277 6757368 - gene protein_coding_gene FALSE TRUE AT1G19510.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G75250.2); similar to myb-like protein RL3 [Antirrhinum majus] (GB:ABI14752.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.33156413444104 -9.8156921505218 9.70918350705564e-07 0.0148171849501176 10.0378310914973 10.6647807649040 -1.33156413444104 0.179440770069075 AT3G03920_at 7.38949818484754 7.91106773621692 6.24665945334598 6.91712218865396 6.40462610151714 6.18843030764205 6.92263645935708 7.51439094011905 7.34800173050568 6.25184260001476 4.7165712799394 5.34549660929459 4.76292268419195 5.12338787541937 5.50986346196843 4.98683256125403 5.0543480999734 4.46627190629774 6.4901585266477 0.228914804303271 0.232312534043581 0.238026257942527 0.234830171073163 0.227996699261257 0.236842284484327 0.239791478613986 0.226552808255849 0.235657818988142 0.221849621590120 0.223716721082384 0.221660966332429 0.230016355347984 0.225200812931745 0.236291269308237 0.228044445107660 0.238625009558032 0.235943929873409 0.230267128312257 3 3|0 -|/ 1009148 1010216 1009573 1009002 1010487 - gene protein_coding_gene FALSE TRUE AT3G03920.1 Gar1 RNA-binding region family protein Identical to Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Arabidopsis Thaliana] (GB:Q8VZT0;GB:Q8LG22;GB:Q9S715); similar to Gar1 RNA-binding region family protein [Arabidopsis thaliana] (TAIR:AT5G18180.1); similar to Os11g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068150.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_796892.2); contains InterPro domain Gar1 protein RNA-binding region; (InterPro:IPR007504) -1.34807231330453 -9.81111626694427 9.75393026591958e-07 0.0148844975857933 10.0350176024778 12.7829936358867 -1.34807231330453 0.183018628279378 AT2G40360_at 7.51477125417461 7.36884988720446 6.75545243370504 6.60919545037157 6.30266380344177 5.89184106212274 6.71150066557639 7.04879037086147 4.99793960704266 6.25267358045346 4.36832186776501 5.32649752356877 4.59792662213885 4.30270145425981 5.1037936162944 5.11891017663429 5.03110866618614 4.39484374423938 6.70312204152938 0.273861778947771 0.270911879544364 0.276266380615003 0.274288767443048 0.276383526388894 0.275597805411825 0.275473091833825 0.273655669575227 0.294957661353264 0.285249478309453 0.278276545645696 0.271650474573403 0.279634291366975 0.284401097314861 0.279981235576587 0.272553223302828 0.287296931471354 0.280254530457610 0.281433797979692 2 2 - 16860220 16860808 16860536.909 16859958 16863768 - gene protein_coding_gene FALSE TRUE AT2G40360.1 transducin family protein / WD-40 repeat family protein similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to putative WD-40 repeat protein [Trifolium pratense] (GB:BAE71307.1); similar to WD40 [Cucumis melo] (GB:AAU04772.1); similar to putative transducin / WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84089.1); contains InterPro domain BOP1, N-terminal; (InterPro:IPR012953); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.987627653916643 -9.80470647502136 9.81698628343932e-07 0.0149787576712717 10.0310730488403 12.1579288002128 -0.987627653916643 0.098690302851886 AT4G31290_at 8.21366393223934 8.0620973818363 4.18368700144669 4.20869027110978 7.33127427080904 7.3273368463552 6.8298072340763 6.25175686316408 8.14124862600972 8.00892730424305 8.75817873766432 8.61209374730498 8.15981038041532 7.95593816329032 8.55646622176385 6.96175656687128 6.62810834534579 8.06956686156562 9.03756610796849 0.210938789018383 0.207721294864060 0.227633029345365 0.214814278049264 0.211268131414584 0.218741188518355 0.206860591144536 0.215760656030068 0.228583673089894 0.212846458175943 0.206210509364303 0.206423330076927 0.211141697246533 0.219537646329571 0.208170414091174 0.208595676029291 0.206680969347539 0.212702900682933 0.209633540252590 4 0|4 /|+ 15187096 15188244 15187750.375 15185964 15188490 + gene protein_coding_gene FALSE TRUE AT4G31290.1 ChaC-like family protein similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT5G26220.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to meloidogyne-induced (GB:ABA46779.1); contains InterPro domain ChaC-like protein; (InterPro:IPR006840) -1.00487919505578 -9.80443796749043 9.81963732504837e-07 0.0149818206668263 10.0309077218971 14.7303661705136 -1.00487919505578 0.103508581432153 AT4G37540_at 4.94517366061162 5.47309970944239 5.13253965874498 5.58378782038808 5.59033629262104 5.37959877351518 7.3126163082001 7.49849811960887 6.87361122096491 6.67964061607772 5.78192925432842 5.15463485805322 4.15012926546675 5.30584759718121 5.272769268625 3.84316925813203 5.67446876264165 5.83406400558601 5.80231018513448 0.242066189273739 0.225538971413548 0.234360961192192 0.231471796461691 0.234786876094666 0.237954692899171 0.235891796569741 0.226164472732472 0.233975525947619 0.226406320776918 0.232637022577772 0.227995462562302 0.228746239559843 0.228937393515894 0.225260682734705 0.229956096953950 0.248914036983637 0.225260682734705 0.228366669326971 4 4 - 17639721 17640149 17639936.727 17639527 17640651 - gene protein_coding_gene FALSE TRUE AT4G37540.1 LOB domain protein 39 / lateral organ boundaries domain protein 39 (LBD39) Identical to LOB domain-containing protein 39 (LBD39) [Arabidopsis Thaliana] (GB:Q9SZE8;GB:Q8LBC9); similar to LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) [Arabidopsis thaliana] (TAIR:AT3G49940.1); similar to lateral organ boundaries domain protein [Caragana korshinskii] (GB:ABG90382.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -1.10525439339450 -9.79004807311269 9.96285230923564e-07 0.0151983311977390 10.0220370422677 11.6539465634636 -1.10525439339450 0.129651690951885 AT3G23805_at 4.91438117947249 5.05232201068278 3.55043905576895 3.97780335419874 3.39319292438337 3.65953693722163 6.37982040141409 7.25320990042604 7.37938444277683 6.64771980445367 7.71291225665607 7.36299483830896 7.14321780563331 7.29273793845678 6.72716320611142 6.17790408140706 4.81895936222066 6.53037094650476 7.23676465556476 0.228083824540396 0.223848516728607 0.226887036936409 0.226601434690816 0.229751332367879 0.230218940642252 0.228182700092383 0.230203097838067 0.222998536982446 0.228757059356575 0.223523247285752 0.222998536982446 0.222998536982446 0.226155216070005 0.234780938110574 0.222998536982446 0.244174436880064 0.222998536982446 0.228325283895158 3 3 + 8586491 8586805 8586647.545 8586389 8587063 + gene protein_coding_gene FALSE TRUE AT3G23805.1 RALFL24 (RALF-LIKE 24) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL31 (RALF-LIKE 31) [Arabidopsis thaliana] (TAIR:AT4G13950.1); similar to rapid alkalinization factor 1 [Solanum chacoense] (GB:AAR00325.2); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -1.31093202581252 -9.78059129916963 1.00582008719369e-06 0.0153417737899654 10.0161962019705 11.6769576481181 -1.31093202581252 0.176092475900706 AT4G18570_at 6.39834741868726 6.50993766913069 4.76026042985551 5.00393679108214 5.99102916634564 5.95425537993743 7.87520605774272 7.70196112568313 7.74031735638947 7.2634528163987 8.18764371349827 8.10770987901918 7.91067532274235 7.64116548305427 7.52767687661721 7.3793485843201 6.88835958695704 7.53529528242597 7.9985363522039 0.231706852152679 0.232307066083931 0.23975561629108 0.247080679912156 0.235443113018645 0.246417998566774 0.237098286871881 0.237728146841415 0.243522952212699 0.233375543472052 0.228160315917644 0.233485036590943 0.230994834039259 0.232478546583015 0.231707274132593 0.231682157961051 0.25772271529299 0.232977852229144 0.232510843198816 4 4|0 +|/ 10233091 10234289 10233529.5 10231229 10234704 + gene protein_coding_gene FALSE TRUE AT4G18570.1 proline-rich family protein similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to pherophorin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68701.1); similar to Os05g0573900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056385.1); contains domain TPR-like (SSF48452); contains domain FORMIN-LIKE 1 (PTHR23213:SF27); contains domain FORMIN-RELATED (PTHR23213) -0.857096896628583 -9.76613065381734 1.02059166328888e-06 0.0155640228651554 10.0072475875473 13.9317016795131 -0.857096896628583 0.0555924931925767 AT3G19680_at 4.46614203346458 4.87952416822695 3.9226803399354 4.10604160564031 4.04417378237571 3.87931956672482 6.00953312952657 6.10672017476831 8.20322716006323 5.77476302675573 8.05762472591819 6.96657158171971 6.49566704513526 7.92491971593063 5.93057779025254 6.28488803904744 5.07443775365607 5.72079247994783 7.18386400829794 0.228326034408317 0.232432272915776 0.244074244879109 0.228795804610345 0.227167628456213 0.233758019093378 0.224515448174418 0.228284871315043 0.249299676598103 0.222769540746413 0.229463671790392 0.225295476563084 0.225318747987611 0.227006047065947 0.225141860396985 0.222769540746413 0.241887029994873 0.229092993358884 0.231280784179347 3 3 + 6841529 6842044 6841761.909 6840287 6842326 + gene protein_coding_gene FALSE TRUE AT3G19680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50040.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93135.1); contains InterPro domain Protein of unknown function DUF1005; (InterPro:IPR010410) -0.93722127987444 -9.7602295020304 1.02668702232234e-06 0.0156559504033934 10.003589817166 11.4822099949945 -0.93722127987444 0.0849781886652017 AT2G20020_at 5.26086243423659 4.84810915178623 4.5267406990626 3.90306540753862 4.03611587990427 3.56836831241634 6.4269265523919 6.08524119905654 3.70056857645896 4.6933116893262 3.03400935097817 3.56294955578352 2.90872066131825 2.77642928009093 3.70183448815894 4.065502334767 3.65703859192627 3.17844390416308 4.25026751132091 0.222008674683173 0.223424143736732 0.234476410989152 0.232197597671787 0.220341726913777 0.235395688023386 0.225868796464566 0.222806426360447 0.223613384850117 0.225859294103322 0.228329593424384 0.222630769340638 0.224159899754272 0.225644497283010 0.22124798716037 0.219156201989284 0.220132280035319 0.222530828338228 0.219790988967302 2 2 + 8653577 8653940 8653764.091 8651467 8654272 + gene protein_coding_gene FALSE TRUE AT2G20020.1 similar to ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2) [Arabidopsis thaliana] (TAIR:AT1G23400.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE81273.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -1.25040608222056 -9.75871883828642 1.02825372918845e-06 0.0156788128626655 10.0026528885413 8.61959467784928 -1.25040608222056 0.163705761387231 AT3G49260_at 8.25610327399293 8.28939201864577 4.64371280479036 4.37471286521241 6.3753602306192 6.52463669501614 7.22457305038844 7.51664054779552 8.65505366378402 7.93560071582455 9.48882404377867 9.96683257872213 9.03847185504834 9.08419531314404 9.6325215516984 9.00589593160645 6.96249481059694 8.74493729581543 8.71124381451074 0.174234394146238 0.169448389492314 0.187708157580689 0.193733968260232 0.174768704264305 0.183622455801581 0.177245559205402 0.175709772775175 0.176776568384345 0.181961838422027 0.171072474193829 0.173772949381199 0.169069687917114 0.173783272876195 0.175498488630008 0.175357501836883 0.182845138306693 0.169069687917114 0.173692716393873 3 3 + 18276288 18276820 18276562.909 18273415 18277006 + gene protein_coding_gene FALSE TRUE AT3G49260.1|AT3G49260.2 IQD21 (IQ-domain 21); calmodulin binding similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQ calmodulin-binding motif, putative [Medicago truncatula] (GB:ABE77889.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to Os02g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046615.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.892757982975636 -9.64968254632383 1.14846794983226e-06 0.0174969092156945 9.93442188999052 15.3628853044365 -0.892757982975636 0.0736359274855597 AT3G02110_at 5.4868964864756 5.26390464049294 2.29844666687147 2.93572477967089 2.91675267436979 3.50996445969692 5.67626075034245 5.82686216100724 6.38969258840327 6.14461636472762 6.84590299749367 7.78867305723477 6.56670952907038 6.78490548685914 7.6816706859141 6.87910994464195 5.03208436427593 6.33326112751661 6.9704063742832 0.281786998128456 0.280725254704713 0.324185159031093 0.309208019588655 0.305312380989196 0.311732794628652 0.28674962041436 0.28346191487879 0.294293916897186 0.280725254704713 0.287407149651260 0.290916022217822 0.286928184284257 0.281400054373652 0.282776208175806 0.281242596230918 0.291745689268504 0.283966130809683 0.280725254704713 3 3 - 370912 371873 371406 370769 373729 - gene protein_coding_gene FALSE TRUE AT3G02110.1 SCPL25 (serine carboxypeptidase-like 25); serine carboxypeptidase similar to BRS1 (BRI1 SUPPRESSOR 1) [Arabidopsis thaliana] (TAIR:AT4G30610.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os02g0794500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048377.1); similar to Os01g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042076.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -1.20539549555308 -9.6175313373291 1.18675691574620e-06 0.0180719343129832 9.91407281560464 10.8596572898312 -1.20539549555308 0.157701114000534 AT3G47430_at 8.01090706644162 7.9348863190076 8.18889612668928 8.07861708852999 8.08103682446546 7.7590600177181 9.59620956025315 9.96307397814463 8.60262047254106 9.26742418565495 7.31726375370277 7.4033701187626 8.76126889865743 8.10783192940072 7.16911731532925 8.85947698345254 8.67296208160526 8.0071695107997 9.2760270038044 0.202431930133394 0.195566462815162 0.204537849086322 0.20115691531712 0.188505295605680 0.201448530060581 0.204031845802234 0.201950504684133 0.213000300716052 0.189920088553075 0.199103225358566 0.215347057003837 0.197697925040866 0.201040414342628 0.214014663854292 0.198066250702948 0.202292524207165 0.203801217085121 0.188505295605680 3 3|0 +|/ 17491872 17492636 17492358.7 17491588 17492777 + gene protein_coding_gene FALSE TRUE AT3G47430.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. similar to peroxisomal biogenesis factor 11 family protein / PEX11 family protein [Arabidopsis thaliana] (TAIR:AT1G47750.1); similar to Os04g0534600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053418.1); similar to Os03g0302000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049868.1); similar to Peroxisomal biogenesis factor 11 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95492.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) -0.930374848323696 -9.60291897792129 1.20461346011136e-06 0.0183402399301955 9.90478944997683 16.9945849366382 -0.930374848323696 0.0875935605926446 AT3G18750_at 3.18128301868273 2.99854832007069 3.60911162023872 3.55753084965129 3.14397490845496 3.64883726213232 5.64319694939841 5.61328620248995 5.48196703491038 5.6145270539959 4.21487199217344 4.32498003139996 4.98482923721858 4.80024792413976 4.11774778536041 5.12192671897315 5.33384695357924 4.46460089234584 5.98900399835161 0.243635155587911 0.243022444087068 0.244710570913201 0.242658349892049 0.240893234723982 0.243412333537664 0.239280432214505 0.243280758691403 0.245361619294285 0.248508349989532 0.239280432214505 0.243439761322656 0.240401508896102 0.247372917921473 0.239280432214505 0.242002950690203 0.254969589301197 0.240881428916089 0.244385810704524 3 3 - 6454504 6454971 6454684.909 6454116 6457518 - gene protein_coding_gene FALSE TRUE AT3G18750.1|AT3G18750.2 WNK6 (Arabidopsis WNK kinase 6); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. similar to WNK7 (Arabidopsis WNK kinase 7), kinase [Arabidopsis thaliana] (TAIR:AT1G49160.2); similar to protein kinase [Fagus sylvatica] (GB:CAC09581.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to WNK7 (Arabidopsis WNK kinase 7), kinase [Arabidopsis thaliana] (TAIR:AT1G49160.2); similar to Protein kinase [Medicago truncatula] (GB:ABE83755.1); similar to Os02g0672800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047709.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.946999774864145 -9.57644617360593 1.23770859604578e-06 0.0188366871232208 9.88791517735497 9.10724487688226 -0.946999774864145 0.093486877163623 AT1G66230_at 4.84903666999046 5.05109533799158 3.91760624188644 3.82984459908595 4.81571066673119 4.87618294075536 6.94410572573007 6.17480602223879 6.82102796782736 6.58747651777554 6.55202961795312 6.03239503149983 5.8975988498843 6.2562945067471 5.67284004514452 6.1536176038031 5.17622882661309 6.08501231958816 7.0389039029767 0.24018195730747 0.237704400916497 0.267565136622666 0.258370948411967 0.246169441518495 0.254453237427221 0.247585356673291 0.245139676163708 0.256849892569896 0.237704400916497 0.240035774361199 0.241678494224677 0.239217850443541 0.247937909170824 0.243263110377744 0.237704400916497 0.249337208376634 0.237704400916497 0.253423739389121 1 1 + 24681330 24681880 24681623.636 24680817 24682078 + gene protein_coding_gene FALSE TRUE AT1G66230.1 MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-related transcription factor [Solanum lycopersicum] (GB:CAA67600.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.11623776145602 -9.55199088315734 1.26915704616359e-06 0.0193140319285176 9.87226269621284 11.4543259737249 -1.11623776145602 0.138876636290773 AT3G15520_at 7.01504951684444 6.70097804712759 5.13883508618981 5.02942491802003 5.48037835927458 5.59430160898513 7.74887500120517 7.65742131290016 7.60504337040248 8.13060763554334 8.70692758355466 8.7909572456874 7.16802888430241 8.06119320185046 8.94438878216427 8.08134934300372 6.90532606569809 8.28363434254734 7.82500302730028 0.204069979770365 0.202709079016938 0.209812964906717 0.210221621070969 0.219275582822845 0.222056828637080 0.198181180126038 0.207220330013487 0.206329122001171 0.199859245869184 0.199452877304705 0.205961631117474 0.209641489481764 0.196872790944305 0.203656807553216 0.196872790944305 0.207032371933193 0.200922710686857 0.199057038033486 3 3|0 -|/ 5249779 5250787 5250361.111 5248936 5252513 - gene protein_coding_gene FALSE TRUE AT3G15520.1 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT3G01480.1); similar to Peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor (PPIase CYP37) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (p38) (TLP38) (GB:P82869); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.852835819858138 -9.52381625479783 1.30646409216934e-06 0.0198791576264487 9.85415286732653 14.2812964940766 -0.852835819858138 0.0628628675454847 AT2G34930_at 3.7396398483973 4.05448176683802 1.56920147561917 1.35147719208747 1.46928311797570 1.67143845263736 3.06950249837818 3.32514556130671 2.98054471951316 2.63055298475503 3.65397507297384 3.61985045630992 2.69024526020084 2.87337122381986 3.91472245082763 3.74742816294272 2.19097066631557 3.07286764319167 3.47783848558537 0.236495407967523 0.232232879205495 0.247117389114001 0.243365552575086 0.231270028498656 0.228972323446072 0.228501519833275 0.227395652478178 0.227395652478178 0.232870429074893 0.239993203021309 0.227395652478178 0.227395652478178 0.227965011865042 0.231917231669121 0.228312515382674 0.227395652478178 0.234478432373759 0.228787745336891 2 2 - 14744334 14744820 14744621.273 14744145 14746983 - gene protein_coding_gene FALSE TRUE AT2G34930.1 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.920529444347613 -9.52057884314122 1.31082629373991e-06 0.0199442220592528 9.85206666890725 5.65630837100029 -0.920529444347613 0.0870018363720295 AT1G70830_at 6.34676799493895 6.0211303113872 4.57007535963277 4.95720274423933 3.9521169808966 3.81631964701307 8.68244236432202 9.01291700516773 4.97326051090978 8.76138631910425 9.2200133557091 9.54888414142193 8.79069014191613 9.8220998119181 8.42131486037547 6.94455293280406 9.13061203524245 9.05775432191258 9.19447591524347 0.245246036027308 0.243157304597968 0.255737877082551 0.245685610855450 0.262717192325611 0.25529179616487 0.235498051868055 0.231822999484991 0.251312440822115 0.231822999484991 0.235174691464101 0.235211607932361 0.231822999484991 0.236927609402477 0.231914545481716 0.243919629399435 0.233271093091416 0.232045627176191 0.231822999484991 1 1 - 26713985 26714474 26714253.778 26713609 26715124 - gene protein_coding_gene FALSE TRUE AT1G70830.1|AT1G70830.2|AT1G70830.3|AT1G70830.4 Bet v I allergen family protein|MLP28 (MLP-LIKE PROTEIN 28) Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)|Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70850.2); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.983968225465943 -9.47316276229419 1.37655485011004e-06 0.0209401523798739 9.82138620192813 14.1748871085739 -0.983968225465943 0.107176864698593 AT2G45800_at 1.67379833054349 1.63086235520202 1.75091406496464 1.77923570160792 1.72532224761071 1.46384707371302 3.49301019471756 3.01724049566875 3.65095408308989 3.53542471299975 2.30113090479492 2.48797877889065 2.70421466743349 2.44120691935642 2.26160936060019 2.74965883923931 2.54115964574044 2.30786761262718 3.53977481363882 0.195414348086521 0.194716948309314 0.201636635048232 0.194192495354700 0.194192495354700 0.195052476829603 0.214829357883859 0.200787478351148 0.194192495354700 0.201726143339793 0.199518630116417 0.197487793760229 0.195395153623259 0.194501863726355 0.199136423093143 0.196120776626251 0.194192495354700 0.198665525337749 0.194192495354700 2 2|0 -|/ 18865269 18865962 18865501.4 18865015 18866263 - gene protein_coding_gene FALSE TRUE AT2G45800.1|AT2G45800.2 LIM domain-containing protein|zinc ion binding similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G61230.1); similar to LIM, zinc-binding; Zinc finger, RING-type [Medicago truncatula] (GB:ABE84732.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) -0.937464633774856 -9.4506053438577 1.40906830303480e-06 0.0214291107525532 9.80670771412331 5.09164774683425 -0.937464633774856 0.0943698176150605 AT4G02990_at 5.80651108351206 6.2040631837047 5.24707532631359 5.48912282842147 5.24454147823456 5.29127333076426 7.07963020962536 6.7013290885126 4.63546143977925 5.43163620624614 3.77879478573753 4.31674579346664 4.61336247472414 3.80150166793433 4.73017007030442 4.98937037968278 4.58640107592819 3.63253310989743 5.28335990044286 0.215260295186663 0.216791368684324 0.212409928104230 0.220522425485124 0.216045414319267 0.217436915294747 0.216582158827187 0.216311418155146 0.216724055864035 0.212409928104230 0.217454617248947 0.215709038725893 0.212409928104230 0.214519640617620 0.219254287555564 0.212960946825354 0.233062887344653 0.223923965871023 0.221290866021439 4 4 + 1323220 1323670 1323391.636 1321859 1324004 + gene protein_coding_gene FALSE TRUE AT4G02990.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G44020.1); similar to Mitochodrial transcription termination factor-related [Medicago truncatula] (GB:ABE94205.1); similar to Os05g0404000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055500.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.97029470642593 -9.44635946121037 1.41528056482568e-06 0.0215221715493040 9.80393885445525 10.5944078670688 -0.97029470642593 0.104110794650298 AT4G37310_at 8.48592679614965 8.51764805405096 8.55677650003096 8.67802023519966 7.8860077140986 7.56371484740798 8.95332288556696 8.77368652075742 7.67659274743758 8.8324950242299 6.68741424587742 6.91165077114238 7.3999728824616 7.33757358469315 6.34700082512073 7.60846518108444 7.85921760937554 7.37217810473517 8.66993828641491 0.179329988676595 0.175172596891162 0.179079066491926 0.180400776688412 0.173281676584214 0.184737248162229 0.176649181421623 0.175683399218399 0.182306744547227 0.173600392416739 0.174590665469196 0.180365289090725 0.185820826446869 0.185275380508234 0.191704061026723 0.173986832540418 0.184209079668765 0.184885421506963 0.172873593747866 4 4 - 17556161 17556574 17556366.636 17555921 17558887 - gene protein_coding_gene FALSE TRUE AT4G37310.1 CYP81H1 (cytochrome P450, family 81, subfamily H, polypeptide 1); oxygen binding member of CYP81H similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37330.1); similar to isoflavone 3'-hydroxylase [Medicago truncatula] (GB:AAQ20041.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.857045387706551 -9.4427376315799 1.42060317782086e-06 0.0216016919219440 9.80157545402671 16.2186093624522 -0.857045387706551 0.0674354294848316 AT1G21460_at 8.40936475496835 8.85036674524143 7.51374278422972 7.38757476777421 8.39389038692292 7.63724420427326 8.64937985451034 8.8367009325461 5.41826707195757 7.30314402864419 4.04114099962824 5.14727039420396 4.94579247858328 4.57164003800252 4.88410512758108 4.17433282912809 5.70839517323328 5.62112567410801 6.13635771471058 0.286980587196939 0.280033919264843 0.290429457285997 0.283223148698134 0.27744593993101 0.296152254557118 0.282774904223693 0.279298483184386 0.295171808051008 0.281674118429237 0.281351032857786 0.27744593993101 0.283274313692579 0.287206592164647 0.290374773111477 0.280770671724094 0.309262903677027 0.286196970960253 0.282752544556431 1 0|1 /|- 7512283 7512675 7512494.222 7511839 7513350 - gene protein_coding_gene FALSE TRUE AT1G21460.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G10850.1); similar to Os05g0426000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055599.1); similar to senescence-associated protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92465.1); similar to Os01g0881300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044998.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) -1.17626881757271 -9.42627224736316 1.44507507838524e-06 0.0219651411914556 9.79081360527145 13.7961071926813 -1.17626881757271 0.156516798815962 AT3G04810_at 4.27958265456865 4.27451757435015 3.20914047944245 3.10999281408902 4.17127376526184 3.57385947960297 4.52068184161620 4.47710891247688 4.75649177366431 4.53017620259767 3.56618048067047 4.39396146553817 3.21409903540528 3.6516320137516 3.98792418311829 3.34558537413118 3.33852849733685 3.60469329263498 4.81986199885652 0.257613013660226 0.248726623660953 0.252213433785575 0.254645558743818 0.247679044707699 0.247154252864879 0.248203795752264 0.246201393947841 0.250019193514035 0.246920701578854 0.242911591534057 0.245628372441937 0.252627263064599 0.242911591534057 0.255882440953335 0.246916919010079 0.252871205094761 0.253576495598829 0.252133584283844 3 3 + 1320529 1321074 1320777.182 1317266 1321300 + gene protein_coding_gene FALSE TRUE AT3G04810.1|AT3G04810.2 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G54510.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G28290.1); similar to putative LSTK-1-like kinase [Oryza sativa (japonica cultivar-group)] (GB:AAR01739.1); similar to LSTK-1-like kinase [Lycopersicon esculentum] (GB:AAL04423.1); similar to NIMA-related protein kinase [Populus tremula x Populus alba] (GB:AAL79042.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.968128613351693 -9.39235969679595 1.49692718496591e-06 0.0227488024299269 9.7685576647768 8.12202079077411 -0.968128613351693 0.105074018425033 AT2G04780_at 3.63177050210283 3.89696648287046 1.4583226291764 1.51367136492455 2.11252835610263 1.84581137681877 4.38362179651444 4.84278411766989 5.34050736319256 5.34921499442237 6.66098556300079 7.57023189757325 4.90915727891982 6.26885500546671 7.47995636045774 5.18484484250567 4.18455427247447 5.99816590508585 5.79512136740147 0.269871435041867 0.262625576504547 0.284775130952914 0.288881794903019 0.292029818589013 0.301983984673748 0.265945324525972 0.271991617430188 0.28537597085104 0.262625576504547 0.267076101375024 0.267139156167908 0.268193396381656 0.28890738135221 0.267751525014544 0.263595013780224 0.269418794586396 0.277310751901640 0.267089128773878 2 2 + 1677728 1678188 1677970.182 1676739 1678452 + gene protein_coding_gene FALSE TRUE AT2G04780.1|AT2G04780.2 FLA7 (FLA7) fasciclin-like arabinogalactan-protein 7 (Fla7) Identical to Fasciclin-like arabinogalactan protein 7 precursor (FLA7) [Arabidopsis Thaliana] (GB:Q9SJ81;GB:Q8LG01); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (TAIR:AT5G60490.1); similar to fasciclin-like AGP 12 [Populus alba x Populus tremula] (GB:AAT37955.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.959528155343538 -9.37372666500711 1.52627085536675e-06 0.0231916856472977 9.75627718142593 8.72420547778467 -0.959528155343538 0.103161537872789 AT1G15470_at 7.2696558149278 7.36390358856042 6.40599778429027 6.56726598003063 6.19686385404393 6.33395398150114 7.75250861755466 7.63786309219814 6.36254743826414 6.72421399172257 6.30160236185748 6.70708790442168 5.42389098917022 6.12006784361566 6.5592370374094 6.05643965722734 5.43248593483845 6.36487852791215 6.65620444708128 0.205220711495945 0.205508332116056 0.211313654491515 0.202314724292678 0.208769636662250 0.207149726818590 0.206000209392880 0.202314724292678 0.205446168587745 0.202314724292678 0.209970657905936 0.202314724292678 0.213930859817336 0.210446694893825 0.203677187850397 0.203606054585484 0.208597795618329 0.208310122082732 0.216035930351077 1 1 + 5316907 5317595 5317329.091 5315502 5317858 + gene protein_coding_gene FALSE TRUE AT1G15470.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); similar to Os02g0205400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046249.1); similar to Os06g0598900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057997.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.795119860988273 -9.30502323936067 1.63996273169759e-06 0.0249110338944863 9.71067520017319 13.2918515430113 -0.795119860988273 0.0447363454845875 AT1G68540_at 5.46768640908296 5.29643977599344 4.03164231344699 4.38605765990838 5.06280585347714 4.82230170885655 6.65936420007845 6.3760225656805 4.47329735243392 5.22924717729841 4.06398806268171 4.35684111227801 4.53252869897349 4.90744398447035 3.96737927253282 4.05895994000259 4.82703688023379 4.37216918376628 4.83822002563558 0.230062887419911 0.229203555890729 0.228004178588175 0.224805089492250 0.216362506559337 0.223393721207357 0.22141014704031 0.226350098570487 0.225944048440326 0.219854321281706 0.216362506559337 0.223982994103379 0.221198467792405 0.217258728046021 0.217460985979115 0.216362506559337 0.218591010979695 0.218947198531048 0.219424035752085 1 1 + 25724201 25724872 25724468.727 25723689 25725028 + gene protein_coding_gene FALSE TRUE AT1G68540.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G25460.1); similar to dihydro-flavanoid reductase-like protein [Zea mays] (GB:AAK52955.1); similar to Os01g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041904.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.917652240187579 -9.27326842051704 1.69557793135364e-06 0.0257490464655363 9.68942574394795 9.87914751597723 -0.917652240187579 0.0936832301662172 AT3G17640_at 3.88654973702168 4.85369255245686 2.59474892736614 3.34448096728774 3.60984129052447 3.99959313849631 6.8584057408248 7.17080066637038 6.06413076452796 6.68453933951164 6.24519678204465 6.17068848533112 5.49576167310577 5.97344379713431 5.79923114452109 6.03103138180748 5.08384552322577 5.73192241747129 6.70169637433608 0.220818358471575 0.215967006281665 0.21751877832902 0.225388167417939 0.213392408563389 0.219792442411757 0.220682929076658 0.223374905567701 0.220813539893099 0.226591626081108 0.210646298485332 0.212526627546949 0.225129200859883 0.218256615061902 0.213283979936138 0.210646298485332 0.231358954138755 0.216439963079472 0.212445705760781 3 3 + 6033021 6033502 6033288 6032399 6033589 + gene protein_coding_gene FALSE TRUE AT3G17640.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G03440.1); similar to putative leucine-rich repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59431.1); similar to Os05g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055516.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.48613071773074 -9.2524972104919 1.73305799703147e-06 0.0263130195689289 9.67546692073357 10.6896869492296 -1.48613071773074 0.228730902952990 AT1G71840_at 8.27681516438606 8.03832473627548 8.26384201459835 8.10344296236266 7.54462010623231 7.27351493281454 8.60042642098611 8.64210623265344 7.12119350687444 7.1783980587478 5.61576647233523 5.84976230917381 6.25995593730105 5.53396687531951 6.21761050438745 6.07504270491677 6.41632194359834 6.13185161855926 7.0130817145891 0.236448012084101 0.232619129538459 0.237799893212615 0.23373196551787 0.231853608882151 0.233321287285132 0.241298172084672 0.233577838854592 0.23498130041559 0.229668069317916 0.233199966053546 0.233114988976667 0.232849843406495 0.234787790473687 0.231918277165782 0.229420703081721 0.23256968790402 0.235825593045029 0.229274302461509 1 0|1 /|+ 27027354 27027961 27027801.556 27025880 27028213 + gene protein_coding_gene FALSE TRUE AT1G71840.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to putative an (GB:AAK14409.1); similar to Os03g0685600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050927.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.842376382805748 -9.24417537502937 1.74832466053229e-06 0.0265395683468801 9.66986121357917 14.6512661825066 -0.842376382805748 0.0687531961974697 AT1G79260_at 3.83370773980919 3.80928165607269 2.94754995616613 3.41559758891963 3.18381581607784 2.76878638997716 5.09211633271825 5.44761958886929 3.52754076727977 4.01393988101859 3.18639239287352 3.30421852244458 2.97958040566537 3.16680599793196 3.20761773682392 3.27220453626166 3.43613422445948 3.00460300939566 3.78651225001586 0.214890370326713 0.206201564428053 0.211649199356122 0.200893267658614 0.206352055438167 0.204123923836645 0.227419543089380 0.212341048127220 0.203484219141656 0.210419635482906 0.202369039249408 0.19966903705459 0.199674578443946 0.204401432348113 0.19966903705459 0.199903765700895 0.207201135574677 0.200389062001982 0.202888304845334 1 1|0 +|/ 29818234 29818898 29818455.7 29818137 29819202 + gene protein_coding_gene FALSE TRUE AT1G79260.1 Identical to Uncharacterized protein At1g79260 [Arabidopsis Thaliana] (GB:O64527); similar to hypothetical protein MBP_91N22.4 [Musa balbisiana] (GB:ABF70108.1); contains domain FAMILY NOT NAMED (PTHR15854); contains domain gb def: YUP8H12R.14 protein (At1g79260/YUP8H12R_40) (PTHR15854:SF5) -1.02402346056077 -9.24380109324438 1.74901470084966e-06 0.0265482941441971 9.66960891419407 7.29765550157799 -1.02402346056077 0.124587004323677 AT4G34650_at 2.66951932057384 2.47556467784284 2.28759079858052 2.22849082093479 2.13578796147788 2.10091933811294 5.02256939226251 4.96160800011244 3.05211128064804 3.52410710003467 3.71626754351572 3.93153310255427 3.17496904957716 3.64419525282321 3.91591230410112 3.04922181021679 3.2845180554335 3.50757969839879 3.87975941002899 0.227799234764482 0.228724246085412 0.227438104384742 0.231313542176537 0.232562967603812 0.237616653105663 0.269040780729089 0.251523324344902 0.233411538000103 0.235399906135927 0.230219693953720 0.231019265420834 0.230957669889371 0.236867544016330 0.232764108621725 0.227438104384742 0.241108441165219 0.232631470139885 0.239149088719711 4 4 + 16543456 16544488 16543967.818 16542382 16545126 + gene protein_coding_gene FALSE TRUE AT4G34650.1 SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase squalene synthase, catalyzes the first committed step in sterol biosynthesis similar to SQS1 (SQUALENE SYNTHASE 1), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34640.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449) -0.775709723040517 -9.22354057134998 1.78681085015932e-06 0.0271166414620178 9.65592863035464 6.49193155489462 -0.775709723040517 0.0371335643447479 AT3G21110_at 4.70094316160233 5.18618804071217 4.31036314784268 4.35010542047876 4.43323269395754 4.44966850778064 6.22632555356076 6.30830407046697 5.03836731364623 5.08637665728968 4.05129094542947 4.51737468499029 4.24345254683428 4.29858730184264 4.72037631071061 4.9067462426207 4.67874397484418 4.11638697343699 4.85731572182682 0.219502971633968 0.212164837882141 0.210057601015279 0.214970787659613 0.210057601015279 0.217148668749795 0.217807407737587 0.214261388694061 0.217161129771017 0.212781781276793 0.211938517431903 0.211673389975919 0.218286439863514 0.214602675503498 0.212130312440592 0.215241933697803 0.215210224199905 0.214728232736667 0.211522504081352 3 3|0 -|/ 7402715 7404141 7403575 7402487 7405647 - gene protein_coding_gene FALSE TRUE AT3G21110.1|AT3G21110.2 PUR7 (purin 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.|5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone. Identical to Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor (EC 6.3.2.6) (SAICAR synthetase) (PUR7) [Arabidopsis Thaliana] (GB:P38025;GB:Q8RXX4;GB:Q9LJC1); similar to SAICAR synthetase (GB:AAA16231.1); contains InterPro domain SAICAR synthetase; (InterPro:IPR001636) -0.885998894534793 -9.21084334443628 1.81094719907626e-06 0.0274811237459822 9.64733227781995 9.71346120963834 -0.885998894534793 0.0854884178724412 AT3G43160_at 3.87802748366290 4.29432028638791 3.91990902974682 3.94165389404602 2.68939818247228 2.87063086052014 3.69454114590716 3.95258015554095 4.49558908294985 4.07649496203376 2.97130714211249 3.18841862468794 3.00198964133718 3.60689716631668 2.91267906710441 3.39480298507069 2.57365820471843 2.68901495479260 4.15116969660065 0.279417777378576 0.292964213313833 0.27573549161346 0.281024184773309 0.278015898505445 0.282104403159384 0.2845738265837 0.283572467205137 0.281916400747518 0.283110175179805 0.292635116582497 0.284386015521569 0.284329877168847 0.27573549161346 0.278727004500315 0.282079044701807 0.286375558811327 0.281433416113311 0.279528031878128 3 3|0 +|/ 15178006 15179189 15178675.778 15177549 15179213 + gene protein_coding_gene FALSE TRUE AT3G43160.1 MEE38 (maternal effect embryo arrest 38) -0.899103941719473 -9.18898460770653 1.85332869679509e-06 0.0281187029877751 9.63249179279715 7.29684790668334 -0.899103941719473 0.0904534645881815 AT3G10080_at 5.63744434681451 6.43241974019969 3.19740437706481 3.15114593665641 3.59652201820318 3.78556737030344 6.99230614429682 7.71508916179268 6.28844049561448 6.123052193817 6.71148326128092 7.908509373783 5.97365006380072 7.0352280559644 8.04305775879395 6.70115205909413 6.17008654635533 6.9463924437982 6.34302773246579 0.219985696691259 0.215815863402258 0.244579715942737 0.230524563431995 0.214460278073973 0.235099056579338 0.212709867324415 0.216534978142564 0.216856755591334 0.216398218268968 0.216134852186987 0.211430882047769 0.211430882047769 0.218895969019405 0.219807128989095 0.216640028320866 0.213945926916596 0.216008089320109 0.215555486824552 3 3 - 3107488 3108049 3107787.182 3107280 3108182 - gene protein_coding_gene FALSE TRUE AT3G10080.1 germin-like protein, putative Identical to Germin-like protein subfamily 3 member 2 precursor [Arabidopsis Thaliana] (GB:Q9SR72); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G18980.1); similar to Os03g0804700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051622.1); similar to germin-like protein [Physcomitrella patens subsp. patens] (GB:BAD86499.1); similar to Os02g0532500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047025.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -1.28848339232961 -9.18191860963396 1.86725723880905e-06 0.0283262923127333 9.62768322597615 11.6573382632454 -1.28848339232961 0.18896104565542 AT3G62390_at 3.75268422944302 3.88316058754122 2.79472204102256 2.32943039737186 3.08048615028468 3.09455103671174 5.22949139853589 4.70012180824143 4.79265419983989 5.70565111554346 5.41278398467247 5.95923018430386 4.71253351279296 4.42040721868672 5.77586814126677 4.93776873141054 4.57254912910297 4.40931104157825 5.95354388150956 0.239156341856074 0.231190207385492 0.242347805368490 0.237657603558663 0.227530054571435 0.226985095018742 0.235244437327845 0.239566608333116 0.235095800176321 0.235839762056681 0.226053180817642 0.231764230553855 0.230986787050418 0.228705138707877 0.226053180817642 0.227553591780946 0.230529787742241 0.226053180817642 0.226550835685907 3 3|0 -|/ 23098252 23098942 23098498.4 23097992 23100182 - gene protein_coding_gene FALSE TRUE AT3G62390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12060.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95542.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.01273016945675 -9.15973375533194 1.91172873979450e-06 0.0289951897964632 9.61255005476294 8.86258406878128 -1.01273016945675 0.124063463945388 AT1G13650_at 8.6922035763903 8.96319266739046 8.9997004807023 8.83025427043252 8.73195278682283 8.65705649960246 11.6294066034008 11.4535730345858 10.9081831511943 11.3223104147552 10.6464545148318 10.9624262554885 10.1814877206514 10.8822576729093 10.6949910329049 11.5277373481698 10.9335634460641 10.4497982115085 10.9284113442434 0.0975231645496855 0.0929104806826267 0.105294562871118 0.104932026113064 0.096563827166267 0.0984518358644812 0.0933289520469836 0.0960024975694612 0.106626975831359 0.0938980356959104 0.0933462360746438 0.0938027451959223 0.0947700975523908 0.095591219767565 0.0968633859398527 0.0925121417853764 0.101086481905877 0.101606063090258 0.0943008233835784 1 1|0 -|/ 4680569 4681215 4680917.8 4680429 4682193 - gene protein_coding_gene FALSE TRUE AT1G13650.1|AT1G13650.2 similar to 18S pre-ribosomal assembly protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G03810.3); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_813437.1) -0.823990869566685 -9.15954051192051 1.91212110836734e-06 0.028999228729499 9.61241799616403 20.4135714042728 -0.823990869566685 0.0644437545227012 AT1G12330_at 5.26892814786064 5.29946791474848 4.53663151693511 4.44712543728505 5.86603771059787 5.60833442003778 6.02373540197935 6.13821658665259 6.93584512066525 6.69466238236882 6.38484273464886 6.48148850520437 5.7496629643331 5.95132516728667 5.22425367662663 6.09882606022674 4.47170852793503 6.35589428640469 6.95272110984436 0.224564469735206 0.212281529924595 0.219781869946945 0.223138136509378 0.209467443919843 0.228614736697936 0.211969139892835 0.213480588405046 0.215324740783403 0.209467443919843 0.213519635982514 0.213384927929529 0.212210626621457 0.213732457842561 0.211305238653053 0.210391125195596 0.24169690998913 0.213174956720592 0.214741425427454 1 1 + 4196333 4196597 4196449.5 4194656 4196747 + gene protein_coding_gene FALSE TRUE AT1G12330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12900.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE94280.1); contains domain TNF receptor-like (SSF57586) -0.79469035277793 -9.15193783455559 1.92762717440441e-06 0.0292324660998428 9.60721919236683 11.7489728643251 -0.79469035277793 0.0514705834158911 AT4G10030_at 5.24967675300282 5.31459109299279 3.80496237250008 4.08056811603407 5.03600161779044 4.83251182297613 6.7954839894419 6.26829959489325 6.58349377167891 6.66892493127476 6.65348090754699 6.84977847390229 5.4978917335481 6.75876087301429 6.00124562677464 6.00623752747972 5.1549689386805 6.46319682400688 6.59285558583743 0.221129575625728 0.221005486552683 0.240695578447793 0.224189996005398 0.223444376791569 0.235963831046113 0.228903218279593 0.219563222303204 0.238724962425980 0.223552503221891 0.233466182648697 0.232352068950532 0.219219259614216 0.226988461947350 0.219450577868032 0.222367963627196 0.244681751263650 0.223503820823799 0.224492940681637 4 4|0 -|/ 6270487 6271594 6270828.222 6270238 6273241 - gene protein_coding_gene FALSE TRUE AT4G10030.1 hydrolase, alpha/beta fold family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52570.1); similar to Os01g0885600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045025.1); similar to Predicted alpha/beta hydrolase (ISS) [Ostreococcus tauri] (GB:CAL55286.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.955199095867682 -9.122288363783 1.98941053195512e-06 0.0301674213065674 9.58688308891402 11.5669051913120 -0.955199095867682 0.109381483359346 AT1G13250_at 4.73637618630224 4.87107521049711 2.45963093924249 2.66682966711648 3.38731675384411 3.64433269287982 5.40707811320244 5.88282122983245 5.72127965583009 5.16651255041887 6.06942508020562 7.31101715231437 5.46001992805654 5.71885996597808 6.57206302032588 5.2960269802717 4.42313122608472 6.01833779326347 5.72145476178334 0.233122166319358 0.230199399466067 0.239292617483241 0.236116360363277 0.229387408066524 0.226918101998135 0.227272084944935 0.233552448433683 0.224793286338437 0.239070094276434 0.228509662538832 0.235327507707852 0.226802855563257 0.234224715509212 0.230050299323344 0.226588652790747 0.226805803888362 0.228297450229043 0.230621184575459 1 1 - 4528963 4529478 4529203.091 4528620 4530060 - gene protein_coding_gene FALSE TRUE AT1G13250.1 GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL4 (Galacturonosyltransferase-like 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G06260.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.93130784219303 -9.10711757039183 2.0218484503154e-06 0.0306572880521324 9.57643974701989 9.8294454987763 -0.93130784219303 0.102885887280131 AT4G08390_at 8.03894978086872 8.26969752196283 8.2925575573019 8.47193473835557 5.68387213957821 5.52793492172734 9.07534006465276 9.2087843644114 5.84246687115263 7.5265803464949 6.69939073125807 6.77784034182206 6.52167749415238 6.62876759019504 7.09692896481784 6.12245728588262 6.57844905487101 7.19709878937454 6.63618132718577 0.234569775049735 0.236326117875515 0.233990333029315 0.247667905818546 0.229913755554365 0.238023193172665 0.244891620828741 0.245678941293923 0.243656084776777 0.228551434328838 0.243109247612288 0.228551434328838 0.231496988592434 0.228551434328838 0.231242060234578 0.231672114602432 0.230146555962497 0.228551434328838 0.228551434328838 4 4|0 +|/ 5315886 5316805 5316421.222 5314902 5317453 + gene protein_coding_gene FALSE TRUE AT4G08390.1|AT4G08390.2|AT4G08390.3 SAPX; L-ascorbate peroxidase|SAPX Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase S, chloroplast/mitochondrial precursor (EC 1.11.1.11) (Stromal ascorbate peroxidase) (sAPX) (AtAPx05) (APXS) [Arabidopsis Thaliana] (GB:Q42592;GB:Q9STM9); similar to TAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT1G77490.1); similar to stromal ascorbate peroxidase [Brassica oleracea] (GB:BAD14932.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.809850663565458 -9.07128944005955 2.10074783261438e-06 0.0318473371424341 9.55167379511898 14.5067517843529 -0.809850663565458 0.0618036549272198 AT2G30500_at 6.70113829898135 6.62478573748878 4.81974116822499 5.02750260329039 6.00413631753876 6.08293200529737 5.85424489067023 5.80975530126828 5.65410480504511 6.67751078495583 5.88140590853545 6.73033084834553 6.00793699015508 5.33146751038372 6.05372205351174 5.85046230807568 4.76919643861875 5.43411072745931 7.26027748551205 0.200244199245711 0.198451739828922 0.194384430596392 0.193019081848099 0.197599625926210 0.205636210520906 0.192309000112649 0.191899111938918 0.206455189745557 0.193807974796384 0.195898512892753 0.195735922300882 0.19628937319414 0.195492711565521 0.195710324248929 0.190300870752595 0.196424386110454 0.190540549233492 0.196691164837319 2 2 - 13005406 13005879 13005634.091 13005236 13007179 - gene protein_coding_gene FALSE TRUE AT2G30500.1 kinase interacting family protein similar to kinase interacting protein-related [Arabidopsis thaliana] (TAIR:AT5G58320.2); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE94140.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.768602480274813 -9.06082008812742 2.12442677140588e-06 0.0322041854277417 9.54440966181556 12.0095096019983 -0.768602480274813 0.0413823644156035 AT1G48480_at 2.73093899257745 2.72715504014854 1.58554703186921 1.85051683762196 1.32572516260278 1.71252389201403 2.72225751786952 2.99395680436775 5.36203325325834 4.29535550426023 5.81861827582107 5.93145437289638 4.22101059205982 4.77380285812149 5.68205431940197 3.74688957411909 1.89362484206558 4.38953344604935 5.84723318066556 0.266624650859132 0.268166906803980 0.294313770095736 0.294313099784355 0.286267172477618 0.293865397097282 0.268669809022754 0.267623705584024 0.28056156726375 0.273726223773644 0.276605900197649 0.272107348847522 0.268258423402349 0.27799139691825 0.279384401453784 0.265732001760842 0.276340743724982 0.265732001760842 0.271946257704279 1 1 + 17923889 17924367 17924052.455 17922059 17924653 + gene protein_coding_gene FALSE TRUE AT1G48480.1 RKL1 (Receptor-like kinase 1); ATP binding / kinase/ protein serine/threonine kinase Arabidopsis thaliana receptor-like protein kinase (RKL1) gene similar to RLK902 (receptor-like kinase 902), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G17840.1); similar to putative receptor kinase [Oryza sativa] (GB:AAK18840.1); similar to Os03g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049422.1); similar to Putative leucine-rich repeat transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAN05336.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.89304131768751 -9.02153901359266 2.21587575536384e-06 0.0335749494452729 9.51704411507672 7.06874308378135 -0.89304131768751 0.0937785563392721 AT1G60230_at 3.85267808053238 4.12668350382167 2.72842012274867 2.94937689899423 3.50257516501607 3.49727526420748 4.25165793620161 4.42343162274783 4.54125411459484 4.66669664313924 4.06294849293959 3.99116945691771 3.53380182488988 4.15640549409726 4.14552327027163 4.05320123501993 3.95249899001572 3.7578443289079 4.58530588669258 0.266359624601366 0.270073524832689 0.285010074945523 0.269969042111625 0.267268337924117 0.274050905498657 0.268311446839586 0.277274233595958 0.277554518563974 0.263949052280694 0.264998825134973 0.260264536681233 0.266674109002616 0.260240730767886 0.26663467540217 0.268284348344450 0.265838152484602 0.263934304558516 0.266150543623660 1 1 - 22215896 22216605 22216286.727 22215749 22218089 - gene protein_coding_gene FALSE TRUE AT1G60230.1 radical SAM domain-containing protein similar to radical SAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19630.1); similar to Os01g0640800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043681.1); similar to florfenicol resistance protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68852.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Conserved hypothetical protein 48; (InterPro:IPR004383) -0.817639500630349 -8.99903455075446 2.27017792743849e-06 0.0343909254227656 9.50128722965388 7.94372550000441 -0.817639500630349 0.0677868962597373 AT3G02250_at 5.75160458994273 5.85150889194903 4.5218188920004 4.0303909962464 5.02422565360138 5.22061776905955 7.6431589523339 7.34387236242079 6.44793138972741 6.59226800448167 7.36511045678493 7.6303263782973 6.18946286228425 7.03022430441542 6.67884439315576 6.12942068739546 4.81422889227126 6.50398567769463 6.3289694041259 0.225094449257375 0.225940825963174 0.233405994695124 0.232516706457454 0.234541743490153 0.232831385954112 0.228506957417228 0.235145454155684 0.240229549330878 0.223628775773242 0.221456061793254 0.221456061793254 0.236428502627557 0.221456061793254 0.233950224163679 0.222918424641210 0.236568799081542 0.223625011345797 0.227061487439287 3 3|0 -|/ 424248 424894 424618.4 423808 427068 - gene protein_coding_gene FALSE TRUE AT3G02250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15740.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96934.1); similar to Os06g0284200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057398.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96844.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.93098100717115 -8.9810879388843 2.31451311877109e-06 0.0350579302100256 9.48868020203017 12.1729447914355 -0.93098100717115 0.106625349016452 AT2G31840_at 7.64446650648231 7.66017063234704 6.42206149277039 6.74811726475503 7.55129611282088 6.77852204776516 8.42899980216849 7.9965364066287 8.06349007251882 8.36730682958954 6.42415774425512 7.14120522209921 6.75562973703813 7.18860515495636 7.58574352345223 7.53717886321402 7.53685638993475 6.80673679119885 8.64108036859836 0.191994714427038 0.191414886180206 0.207449957621174 0.202099555646982 0.194263895254725 0.206010664585894 0.194501064376335 0.191414886180206 0.201771167414900 0.193588297571308 0.199352629391980 0.196713631036912 0.196025194574241 0.195105283460934 0.197417731777200 0.193784501852697 0.195260963508619 0.204728845773661 0.199198542717360 2 2|0 -|/ 13545112 13546097 13545567.1 13544989 13546835 - gene protein_coding_gene FALSE TRUE AT2G31840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28590.1); similar to Os05g0417200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055561.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77387.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -1.14641117633955 -8.95944990694419 2.36921574540283e-06 0.0358794032483805 9.47343102683886 15.143424584136 -1.14641117633955 0.163329440028743 AT3G28040_at 7.71542265050257 8.29065949072345 6.622452591974 6.41140774167654 7.74500338362192 7.91591861989433 8.80859345323142 9.02243981846649 9.27322864101864 8.77788592045932 8.82776449757573 9.09536728588667 8.32191618990662 8.46759015340765 8.79342278181968 8.43316015456978 6.79255584620872 8.39861376159483 9.02593243369952 0.149681756659641 0.147192750120119 0.163546506523425 0.174666786516391 0.150840041218138 0.148220446783242 0.143450909648768 0.149162639917227 0.148094806763135 0.149289292499591 0.143794082450965 0.143450909648768 0.149692570096883 0.145653869605846 0.146550086678632 0.143450909648768 0.171995144574022 0.149017293289534 0.147781829949398 3 3 + 10438962 10439475 10439232.909 10436294 10439628 + gene protein_coding_gene FALSE TRUE AT3G28040.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G56370.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92869.1); similar to Protein kinase [Medicago truncatula] (GB:ABE85779.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26311.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.95998338339695 -8.94241732150154 2.41325821212682e-06 0.0365415558480244 9.46138967210528 16.5249778015599 -0.95998338339695 0.116137555683746 AT2G04530_at 5.69725564550659 5.56828398228558 4.61160249334743 4.42180139452345 3.89293483166441 4.28794124247707 4.44971466794929 4.88900517395871 5.04106025036135 3.92119113654999 2.61755883455858 3.14560232553208 3.17539913620338 3.36602963527603 3.88228203473585 3.81693324867370 4.07175009141633 3.22729008330318 4.35227145599006 0.269901259056181 0.268668944002526 0.277299980791962 0.267966128877001 0.27221023316854 0.274953139593002 0.268051640689148 0.26919601554689 0.276210702560989 0.266366885983097 0.269522159119842 0.265326582460770 0.272707675254591 0.272714381958262 0.270355657470868 0.265367462009147 0.273200997994407 0.26691198047086 0.264034954076661 2 2|0 +|/ 1577731 1578251 1578000.125 1576706 1578738 + gene protein_coding_gene FALSE TRUE AT2G04530.1 CPZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast. Identical to Ribonuclease Z, chloroplast precursor (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase CPZ) (CPZ) [Arabidopsis Thaliana] (GB:Q8L633;GB:Q8LGU8;GB:Q9SJB8); similar to NUZ [Arabidopsis thaliana] (TAIR:AT1G74700.1); similar to Os02g0214300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046280.1); similar to RNase Z (ISS) [Ostreococcus tauri] (GB:CAL55620.1); contains domain RIBONUCLEASE Z, CHLOROPLAST (PTHR12553:SF4); contains domain no description (G3D.3.60.15.10); contains domain Metallo-hydrolase/oxidoreductase (SSF56281); contains domain ELAC RELATED (PTHR12553) -0.936406742088347 -8.93313454261152 2.43763325585936e-06 0.0369082051269666 9.45481305478738 8.65283240630383 -0.936406742088347 0.109676847099523 AT4G01660_at 5.61635616957098 5.28051553318862 5.30593361137272 5.14869541483855 4.71965797742674 4.61108575637332 6.1053414461857 5.92787228667101 4.08600892779114 4.61209107874734 3.58390792139951 3.35864547063170 3.51962302960424 3.65606037874225 3.69151250092714 4.02065382869714 4.10837371883005 3.50776742705782 4.94217855126922 0.253930083568545 0.258725243948045 0.257082855244623 0.255484739897735 0.252240584432793 0.256185679705809 0.253381324217763 0.25398681392765 0.251735780005928 0.250536133460710 0.257210621088780 0.250564686211784 0.257996730135907 0.255901816471308 0.252539860666421 0.255376009570875 0.263001890031285 0.250636052783164 0.253375175444796 4 4 + 710469 711051 710848.727 708544 711256 + gene protein_coding_gene FALSE TRUE AT4G01660.1 ABC1At (ARABIDOPSIS THALIANA ABC TRANSPORTER 1) Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.2); similar to ABC1 protein [Capsella rubella] (GB:AAM18498.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.826059826842123 -8.93024573720275 2.44527296172865e-06 0.0370214326405717 9.45276438030919 9.45322105133118 -0.826059826842123 0.0735830411081689 AT4G00490_at 7.86341372244175 8.19368200025321 7.3086827535885 7.1727283100361 6.82509312293458 6.8133923190729 8.0993913301776 8.22932843790613 7.80396565003205 7.799275089358 7.08470676552149 7.52374989676291 6.4140389018749 7.07435081538279 7.3804372206286 7.30952896144581 6.38325136743671 6.82494940346311 7.00767896524975 0.202883459305397 0.197087318465289 0.205014064773896 0.198118989672162 0.193532044888524 0.20611852555041 0.203265286624642 0.205779558565390 0.203684332455229 0.211105640100359 0.197875925022451 0.203008280130282 0.204596739216372 0.20137074765015 0.202892468533998 0.200342087346357 0.217931656653761 0.214017199069802 0.209153740121358 4 0|4 /|+ 224249 224819 224520.889 222320 225131 + gene protein_coding_gene FALSE TRUE AT4G00490.1 BMY9 (beta-amylase 9); beta-amylase similar to BMY4 (beta-amylase 4), beta-amylase [Arabidopsis thaliana] (TAIR:AT2G45880.1); similar to Os09g0569200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063976.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O64407); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.802038157301024 -8.87990417479826 2.58264494336295e-06 0.0390831659279115 9.41690819460119 14.8313889502736 -0.802038157301024 0.0658020434970249 AT1G74070_at 5.96453566192687 5.96043196653591 4.88980238440887 4.45081198215172 5.55196624485951 5.64337177546494 7.42384690631592 7.18559577219477 7.47111593631849 7.50102677508658 7.0220744760897 7.77755672043557 6.70382010321122 7.42100609635824 8.0713331701586 7.34334962139572 6.44561794398614 6.899125163522 7.31055429153014 0.211282395202732 0.199841418312324 0.211177951106019 0.209982942487803 0.200212204156860 0.201214970569435 0.202218903056133 0.196079504396267 0.207514742782159 0.197075847093473 0.197980872900592 0.199401611963501 0.199903758201880 0.198721809014553 0.194703467460988 0.194716883429333 0.198216231633496 0.195770305480067 0.200882371491517 1 1|0 -|/ 27855612 27855985 27855833.2 27855149 27856637 - gene protein_coding_gene FALSE TRUE AT1G74070.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G35100.1); similar to Os01g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041801.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44942.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.858347367886266 -8.85092924629896 2.66547531870035e-06 0.0403339725225737 9.39613691511618 13.2028208765022 -0.858347367886266 0.0878749682393524 AT3G18560_at 4.4190790885333 4.71839377178207 2.79111492381168 2.83683827712563 3.3269878176095 3.76852643004005 4.36580083513618 4.41590918345882 4.34868125259678 3.16189484646638 2.73266040339291 3.48502865288297 3.19858529780025 3.33658645519215 3.09327027742263 3.42542434262976 3.66343622242320 2.74285494643320 3.45876022036161 0.228285013498502 0.213214758585022 0.220847069561659 0.209474402003692 0.21075285924709 0.212756033086478 0.211268076788307 0.214481018893510 0.208679152453021 0.209638891656122 0.209627855272587 0.210962813597025 0.213643133128375 0.214149308826262 0.224294789011153 0.212448573471476 0.20802514624345 0.213802803723635 0.211430532394997 3 3 + 6393995 6394526 6394201.818 6393916 6394791 + gene protein_coding_gene FALSE TRUE AT3G18560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49000.1); similar to Os02g0711400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047903.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45365.1) -0.872821736308503 -8.83970353747563 2.69833375612505e-06 0.0408230913964158 9.3880631517398 7.26341942322735 -0.872821736308503 0.0930556456100234 AT2G02950_at 7.72571559358293 8.24363465183198 5.7923878644855 6.26087124641871 7.36546229816826 7.62596404477507 8.21605795437793 8.11345787782308 7.5972520523461 8.03384723487311 7.15847096877778 7.54482120276251 7.24759709853371 7.07435677992867 6.89743366065148 7.59791659062291 6.76926011478796 6.21981394238571 7.61396199475672 0.218090277517144 0.216929898826598 0.220532095202187 0.218100714153703 0.220544174789440 0.222683048742949 0.22233362736618 0.215980250738158 0.226673279112714 0.215980250738158 0.218596794085372 0.225750194800227 0.217227843275042 0.225958113721697 0.220622318362776 0.215980250738158 0.235664639286801 0.236460120782878 0.218833366266773 2 2 - 855155 855678 855405.909 854946 856537 - gene protein_coding_gene FALSE TRUE AT2G02950.1 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling. Identical to Phytochrome kinase substrate 1 (PKS1) [Arabidopsis Thaliana] (GB:Q9SWI1;GB:O80610); similar to PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) [Arabidopsis thaliana] (TAIR:AT1G14280.1); similar to putative phytochrome kinase substrate 1, putative [Medicago truncatula] (GB:ABE90777.1) -0.999095060897196 -8.83138398744465 2.72296794949063e-06 0.0411930591398942 9.3820700261632 14.8239752191654 -0.999095060897196 0.130206214709465 AT3G23940_at 6.14319191233414 6.59115229907994 5.55173122842738 5.33139178233009 4.84404728017395 4.80608122945174 6.47807471873659 6.83383126349153 5.75572889254923 6.4251890980967 5.50091121494589 6.50940340405132 5.08890035080801 5.09322175586721 6.6766891370198 5.33929325834468 4.93992441787262 5.85408062612182 6.0113610322222 0.189833568709017 0.194045937844527 0.186985017543719 0.186297371118969 0.191060397136879 0.189017627765971 0.189293732120566 0.192089766880751 0.192286827347206 0.186297371118969 0.189522160506960 0.186297371118969 0.186297371118969 0.195084359758199 0.192340598286719 0.190181614699592 0.209800164456940 0.188693420091312 0.188112940587637 3 3|0 +|/ 8650929 8652288 8651651.6 8648712 8652612 + gene protein_coding_gene FALSE TRUE AT3G23940.1 dehydratase family similar to dihydroxy-acid dehydratase [Rhodopirellula baltica SH 1] (GB:NP_870314.1); similar to dihydroxy-acid dehydratase [Blastopirellula marina DSM 3645] (GB:ZP_01094431.1); similar to Dihydroxy-acid dehydratase (DAD) (GB:Q7UJ69); contains InterPro domain Dihydroxy-acid and 6-phosphogluconate dehydratase; (InterPro:IPR000581); contains InterPro domain Dihydroxy-acid dehydratase; (InterPro:IPR004404) -0.908519827654275 -8.7752133593091 2.89578309964347e-06 0.0437987193821075 9.34139331468323 11.6671357283790 -0.908519827654275 0.106287424500250 AT1G53645_at 6.6683527760379 6.6607651070186 5.56596842782329 5.61741448789677 4.60537613679154 4.45335820161730 5.58699178938368 6.02451392998854 4.08585649594349 4.05992600691522 3.45027318869275 3.89553807482924 3.71689534929491 3.33603121405097 3.74456344072310 3.58862944667994 3.72386122734432 3.70027247508793 4.23618047701686 0.221187738918472 0.214345009095615 0.214194624939307 0.215078439603558 0.210045867973546 0.220005858614841 0.216257597357627 0.213532822969247 0.219872435381742 0.216467262307346 0.211828390191408 0.214483912191220 0.212913684476546 0.216006245932576 0.221482699727397 0.210302453190167 0.225570553281013 0.217452193031074 0.214889251058858 1 1 - 20030127 20031247 20030619.818 20029815 20032303 - gene protein_coding_gene FALSE TRUE AT1G53645.1 hydroxyproline-rich glycoprotein family protein similar to actin binding [Arabidopsis thaliana] (TAIR:AT1G31810.1); similar to hydroxyproline-rich glycoprotein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45380.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.82871976413946 -8.7560695818676 2.95735894092342e-06 0.0447211819046439 9.32744480090456 9.53375712975958 -0.82871976413946 0.0806589476084426 AT1G11820_at 5.99741077413882 5.50580468172924 4.66745439700667 4.4568623413229 5.06237346241293 4.59140054999444 7.61418155994878 6.98183535161853 5.40638937473194 6.20898881838508 5.48358482334466 5.69430374949955 5.82641927345273 4.9562521607829 5.72047593956515 5.21795778672746 5.67315553532958 5.30927446485437 6.08632092486431 0.302791364040651 0.316695253467732 0.310427661579488 0.314082035718475 0.308845180547710 0.301890887503505 0.316110668037281 0.321600087417792 0.301890887503505 0.319658001768722 0.304897877968766 0.302923773691312 0.304351282656937 0.304354700763065 0.305483812390194 0.301890887503505 0.319951593791155 0.317123928641687 0.303836592609935 1 1|0 -|/ 3992005 3992228 3992117.833 3991039 3993524 - gene protein_coding_gene FALSE TRUE AT1G11820.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.2); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE89104.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.12283690507025 -8.7256588355381 3.05810189616028e-06 0.0462232101604626 9.30519727716743 11.3025375594490 -1.12283690507025 0.164875125706602 AT2G20060_at 7.47088439348398 7.67317561937593 7.02708342427168 7.28940073467205 6.55935789895547 6.72137388331229 7.7303523879629 7.88633947728447 6.4238746252181 6.57443080354765 5.20456718724538 5.65534678455247 5.76037154460326 5.5807318832573 6.28757871084699 5.6146662660279 6.39232392516397 5.54539068651882 6.6727472314998 0.215604046668422 0.215937395881697 0.219690545375805 0.219478984056836 0.219161854436418 0.217929186520991 0.215604046668422 0.215604046668422 0.229885572642872 0.218612757100789 0.221557224267042 0.223411231425113 0.216290366160992 0.220592674749409 0.215604046668422 0.215951098452893 0.225706858981744 0.223797949390985 0.215604046668422 2 2|0 +|/ 8667375 8668284 8667928.6 8666124 8668570 + gene protein_coding_gene FALSE TRUE AT2G20060.1 ribosomal protein L4 family protein similar to RPL4 (ribosomal protein L4), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07320.4); similar to Os12g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066789.1); similar to 50S ribosomal protein L4 [Rickettsia bellii RML369-C] (GB:YP_538231.1); similar to Os11g0585700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068165.1); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136) -0.79638970705939 -8.72523194535608 3.05954218966464e-06 0.0462419206545914 9.30488419236227 13.4508158158893 -0.79638970705939 0.0692895968369348 AT1G28395_at 4.54374878083784 5.16245775189675 3.47856738563287 3.69943995213971 3.38291483784443 3.82770732966559 5.64697966255004 6.37917317829127 4.21599999738214 4.60354965664087 3.84764612843004 4.24563967902784 3.82523261941388 3.54712614278562 4.69836786409018 4.14571623038191 3.5383449186548 3.79085991248157 4.82771735187567 0.235746553177782 0.231848632562737 0.233946328041169 0.238704580813767 0.229319802153126 0.235519382161966 0.235452574665452 0.247806375574934 0.248766448710880 0.231101989867599 0.240391824519834 0.230531699974816 0.229972679244758 0.230762572308215 0.230039343427967 0.228256109761729 0.236572816672669 0.234151985806709 0.234698673722144 1 1|0 -|/ 9971060 9971293 9971158.444 9969428 9971504 - gene protein_coding_gene FALSE TRUE AT1G28395.1|AT1G28395.2|AT1G28395.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33847.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89009.1) -1.21507739106566 -8.7242884490712 3.06272807094452e-06 0.0462870093361845 9.30419214704394 8.76710145429454 -1.21507739106566 0.186829576753427