ID expr.6.4.exp_090507.CEL expr.6.4.exp_150607.CEL expr.6.5.exp_090507.CEL expr.6.5.exp_150607.CEL expr.6.7.exp_1_040507.CEL expr.6.7.exp_150607.CEL expr.7.2.exp_1_040507.CEL expr.7.2.exp_150607.CEL expr.6.4.3_exp160807.CEL expr.6.4.4_exp160807.CEL expr.6.5.11_exp160807.CEL expr.6.5.2_exp160807.CEL expr.6.5.6_exp160807.CEL expr.6.5.8_exp160807.CEL expr.6.7.19_exp160807.CEL expr.6.7.20_exp160807.CEL expr.6.7.21_exp160807.CEL expr.6.7.22_exp160807.CEL expr.7.2.1_exp160807.CEL se.expr.6.4.exp_090507.CEL se.expr.6.4.exp_150607.CEL se.expr.6.5.exp_090507.CEL se.expr.6.5.exp_150607.CEL se.expr.6.7.exp_1_040507.CEL se.expr.6.7.exp_150607.CEL se.expr.7.2.exp_1_040507.CEL se.expr.7.2.exp_150607.CEL se.expr.6.4.3_exp160807.CEL se.expr.6.4.4_exp160807.CEL se.expr.6.5.11_exp160807.CEL se.expr.6.5.2_exp160807.CEL se.expr.6.5.6_exp160807.CEL se.expr.6.5.8_exp160807.CEL se.expr.6.7.19_exp160807.CEL se.expr.6.7.20_exp160807.CEL se.expr.6.7.21_exp160807.CEL se.expr.6.7.22_exp160807.CEL se.expr.7.2.1_exp160807.CEL Chr ChrList StrandList From.Min From.Max From.Mean start end strand type Note isChr5 isClean IDlist Short.description Currator.summary Description logFC t P.Value adj.P.Val B A M M.se AT3G16670_at 10.5592155823743 10.5663194161630 2.93150681854914 3.12192027237412 3.20985345791683 3.62953667059365 8.57606225971434 8.59862933945175 7.67007749745681 6.31631910295705 3.97923225148292 10.0217103160498 3.07827138274232 3.68835187027739 9.34211807501798 2.46376205428759 4.12215787619764 3.72948424938252 7.02358307422864 0.384159064341538 0.386027975135638 0.377130827350739 0.375592585059119 0.372940861565905 0.372940861565905 0.378233562229264 0.380939082751446 0.387002380490511 0.378447949821754 0.374305830538303 0.383126345600439 0.379310973539665 0.372940861565905 0.379605380602977 0.380375277751615 0.377296215388253 0.385618678472714 0.37635567815129 3 3 + 5681522 5682038 5681774 5681425 5682337 + gene protein_coding_gene FALSE TRUE AT3G16670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16660.1); similar to Phylloplanin precursor (T-phylloplanin) (GB:Q56S59) -4.1510214466759 -47.5672544157574 1.63736670702828e-11 1.2042832130193e-07 13.5799158660339 12.4273617609641 -4.1510214466759 0.079858871763409 AT3G05730_at 10.6756367675512 10.5722561031340 4.45616315723792 4.55960712907676 5.82492340837975 5.97057136186083 9.79758620684767 10.0117945773261 7.21501871446633 8.77886736907171 7.91152549913421 10.6248148678154 7.83964605506799 8.46470762149685 10.4124178563509 4.2642676531655 7.52637277465538 7.01241801103469 9.11876144142028 0.196257732356933 0.19656545468432 0.196870151794635 0.20363090894108 0.198872380414233 0.204995530593925 0.199724851447661 0.196361928331462 0.203011065730499 0.20034692226013 0.194894956336762 0.198132007117549 0.19528938346363 0.199610933596376 0.198406180666602 0.199078928012463 0.208820058606045 0.199509593600014 0.194894956336762 3 3|0 +|/ 1696076 1696467 1696346.7 1695982 1696714 + gene protein_coding_gene FALSE TRUE AT3G05730.1 Encodes a defensin-like (DEFL) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05727.1) -2.71268168277762 -35.4961902034008 1.89263668207984e-10 1.39165575233331e-06 13.3872214754197 15.9225192392565 -2.71268168277762 0.0514780962811783 AT2G21650_at 8.58394661310563 8.75838336891464 3.74536061060993 4.01880298415324 3.47117696585657 3.24578434519067 6.59790095022831 6.77200136517199 4.49653801548407 4.7984313892319 3.94056289815735 4.03230220619654 3.60060531095117 3.09495486507761 3.32310104789528 4.77680799399844 2.78583532394799 3.20010516482321 6.40920603155337 0.284176813674068 0.283114132632110 0.272152583712740 0.267779679871143 0.268190727638008 0.27651040099656 0.278580182284626 0.276877320392836 0.277905678435261 0.273023945093634 0.272967982788103 0.267655025716005 0.269055229615359 0.285639651446897 0.267655025716005 0.267655025716005 0.289616772685116 0.272518060312659 0.272638869253992 2 2 + 9266736 9266987 9266845.182 9266663 9267736 + gene protein_coding_gene FALSE TRUE AT2G21650.1 MEE3 (maternal effect embryo arrest 3); DNA binding / transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G39250.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -2.84910882097235 -33.4946348157637 3.0721309760074e-10 2.25863069356064e-06 13.3352658993563 10.0636743988059 -2.84910882097235 0.074697036797757 AT3G46370_at 5.8521054481967 5.42107038547599 1.91726629404478 1.41589241214715 1.42044510283032 1.71940334740554 7.84168937340301 7.23653719677045 7.38025023598448 7.50696807664637 3.74293682073483 3.24601906867432 3.59844913175312 4.14221421283802 3.92943163204712 3.08725687954673 3.85794705030851 3.86003812293951 7.04532723772229 0.226325189084703 0.214414666711775 0.216764945365237 0.219024959883329 0.224227463586694 0.214097193799513 0.227063364120092 0.224542717742454 0.231831902784713 0.217025910540892 0.208570287788836 0.209141378114025 0.220748234554625 0.213921812792618 0.208570287788836 0.210196582873392 0.213115061870667 0.215605296006499 0.218197684308768 3 3 + 17065857 17066462 17066232.091 17062940 17066499 + gene protein_coding_gene FALSE TRUE AT3G46370.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46340.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G46420.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46400.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -4.29870535689185 -32.6721922750348 3.78008674545817e-10 2.7787417665863e-06 13.3113215819073 9.59999376085407 -4.29870535689185 0.163511675421749 AT3G23880_at 6.134290892215 6.35439358294645 1.89019843891709 1.80184300500628 2.95015195700558 2.51606549981527 6.64341157503858 7.20805882327944 5.84857077666394 6.02495474186639 3.08613073779153 4.187995415406 4.13318701569483 4.303115636994 3.44094828183205 5.32306709417577 3.06744862258321 2.97532815876326 7.09325091620445 0.236253354575289 0.235085348514399 0.232399710966792 0.244565594990984 0.236040230111197 0.246287314653639 0.238927255133778 0.230912443718473 0.247184300368015 0.234538412373321 0.238039642433765 0.230912443718473 0.230912443718473 0.230912443718473 0.233651054791604 0.236463631024959 0.242248112688815 0.237356162387284 0.232689636015568 3 3 - 8622096 8622549 8622306.091 8621995 8623169 - gene protein_coding_gene FALSE TRUE AT3G23880.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE90596.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE77917.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -3.4015400921785 -30.2851300311783 7.11442324877022e-10 5.22838964552123e-06 13.2314600961502 9.50575743776963 -3.4015400921785 0.129907405034099 AT1G66100_at 11.9322649545901 12.1891864579261 8.51425836848633 8.81022244730822 9.10022099036216 8.76317795825268 12.8544687214657 12.9937426316114 13.1418941758578 13.2472172957759 12.6694461712648 13.0707957920504 13.2268889644827 12.8639898001231 12.0258875559937 12.7035204073486 11.6821192901113 12.7464280967167 13.3870310037106 0.0885333221497122 0.0856519230472216 0.106109580453512 0.102718241004893 0.093864031162581 0.104202951655540 0.0883761838239716 0.0862748699228861 0.0932313168276047 0.0873976069949868 0.0873688490499009 0.0856519230472216 0.0864157447019019 0.090899456812524 0.0882960437479943 0.0856519230472216 0.0922677107136773 0.0856519230472216 0.0865344503554723 1 1|0 -|/ 24609552 24610044 24609863.9 24609334 24610200 - gene protein_coding_gene FALSE TRUE AT1G66100.1 thionin, putative Identical to Probable thionin-2.4 precursor [Contains: Probable thionin-2.4; Acidic protein] [Arabidopsis Thaliana] (GB:Q9C8D6); similar to THI2.2 (THIONIN 2.2), toxin receptor binding [Arabidopsis thaliana] (TAIR:AT5G36910.1); similar to thionin (GB:AAC41679.1); contains InterPro domain Thionin; (InterPro:IPR001010) -2.16526269949132 -23.2598232216876 6.37554167207727e-09 4.67709737063589e-05 12.858521138243 23.5858671503551 -2.16526269949132 0.092644652622384 AT1G64390_at 7.73253395515183 7.74413262111152 2.99910768474332 2.98010205784856 5.34949880473972 5.21992970222513 9.2126263306071 9.35332474908405 8.09739252529257 8.36482413702439 9.81141090247656 10.7624978988076 9.32144863915278 9.36411337993725 10.5437252265792 9.52180384901676 7.81117688592884 9.79704557685312 8.80235600550824 0.191290955963578 0.179278967075559 0.193460067914654 0.187885916684986 0.190233759601853 0.206351867102025 0.176201494762119 0.180840194031523 0.204218195321123 0.187352597792714 0.177156354278619 0.17879652625776 0.182315485867178 0.184103661745857 0.185194532877228 0.177760204401725 0.193007878197679 0.17962752510693 0.186397288982643 1 1|0 +|/ 23917560 23918281 23917857.111 23914782 23918892 + gene protein_coding_gene FALSE TRUE AT1G64390.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT4G11050.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G48930.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G32990.1); similar to cellulase [Fragaria x ananassa] (GB:AAC78298.2); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAB43938.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAC94006.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.58918313968191 -22.2375121694032 9.24917482260315e-09 6.78334481489715e-05 12.7776314505022 15.3429954969151 -1.58918313968191 0.0333236696499155 AT2G04160_at 6.50158535152148 6.99108843657158 3.69290154980456 3.45283354886109 3.71846999495844 3.60329219157941 6.51071367777368 6.18297997729206 5.37986261978269 5.03994663489338 3.12234339575787 4.12299681952346 3.05859837365167 3.11697100339992 4.42195656006551 3.89462227963318 3.49075256459017 3.51785363357235 5.19377951272319 0.237559615322723 0.227984674888713 0.229435354828018 0.221238786917346 0.221269907014135 0.227605713255323 0.224825441687276 0.246693670965596 0.231348968609307 0.224128349283224 0.222075942937763 0.221260898913694 0.237319297214667 0.225882727786617 0.221238786917346 0.224182998990751 0.230416890235110 0.235964082969425 0.228060800335269 2 2 - 1401610 1402294 1401935 1401273 1407742 - gene protein_coding_gene FALSE TRUE AT2G04160.1 AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59810.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max] (GB:AAQ23176.1); similar to putative subtilisin-like proteinase [Oryza sativa (japonica cultivar-group)] (GB:BAD35630.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -2.27049264992382 -22.1169754666453 9.67449137652089e-09 7.09430452640277e-05 12.7674634163521 9.48062879999896 -2.27049264992382 0.111874348601354 AT1G55260_at 8.14785788378196 8.43906350882582 3.70564628932188 3.75302808036622 5.37196473414414 4.79146378943074 10.0373477669444 9.94288384112963 8.4823354190885 9.42324143620114 10.0015654424387 10.2269718008407 9.8257837676275 9.48877468294975 9.98824393694043 8.55830289581432 8.22853529525262 9.39879422497156 8.95659764405978 0.206160465555143 0.201478710504177 0.226334125260131 0.229208816241255 0.232659311049981 0.223859554462799 0.202753723314616 0.199273075402836 0.215933230687403 0.203058645379978 0.199273075402836 0.199273075402836 0.199273075402836 0.199273075402836 0.200914738363132 0.199978736756109 0.217986445154871 0.206603092621216 0.204799725087797 1 1|0 +|/ 20618474 20619795 20618897.8 20618416 20620102 + gene protein_coding_gene FALSE TRUE AT1G55260.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid transfer protein-related [Arabidopsis thaliana] (TAIR:AT2G44300.1); similar to Protease inhibitor/seed storage/LTP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94168.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -2.11284959372504 -20.3752012982760 1.90496319335075e-08 0.000139538553912943 12.6034070171484 15.9829968228952 -2.11284959372504 0.113868197497863 AT1G01060_at 8.4178727449154 8.92046092042225 6.08124149006185 6.52050513152252 4.95395964268952 6.06655698903061 10.2443091039108 10.5178596505997 9.84596700501523 10.0367421409878 6.91338681609888 7.47018407755012 7.07797716856698 7.49164993908654 5.48100632388683 8.30991487761654 6.05815741041896 6.3104467916084 10.0789875176801 0.228197838830086 0.228197838830086 0.232465031412987 0.236592351789317 0.228354423051079 0.237798923066655 0.233815938140536 0.238444524910888 0.233271035889296 0.230040135725645 0.230306019139558 0.236615629364676 0.228329989511684 0.233109897165061 0.241176410309473 0.228197838830086 0.245118484162831 0.240982847919909 0.236286408036206 1 1|0 -|/ 34174 34636 34419 33379 37840 - gene protein_coding_gene FALSE TRUE AT1G01060.1|AT1G01060.2|AT1G01060.3|AT1G01060.4 LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor|LHY (LATE ELONGATED HYPOCOTYL); DNA binding|LHY (LATE ELONGATED HYPOCOTYL) myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -3.35885079362972 -19.5048912916298 2.72987068609554e-08 0.000199826534222193 12.5076421341106 16.15350703256 -3.35885079362972 0.229468799178338 AT1G59930_at 5.93924971086924 6.0339482242812 3.30105066783612 3.95699471661445 4.40263458706319 3.84261469626542 7.0502940109922 6.34128760967702 5.57420565658844 7.00775428943973 3.24354628561623 2.37453471068504 3.11505291432171 4.29829273975221 2.88166859236379 3.27454466134281 3.61484970102123 2.91490017542489 6.85860214386264 0.582312911610962 0.480452979185415 0.480452979185415 0.480452979185415 0.480452979185415 0.508953429910014 0.480452979185415 0.490364298916732 0.508049320574721 0.529278478665006 0.500375766922311 0.480452979185415 0.480452979185415 0.480452979185415 0.491379095294569 0.480452979185415 0.480452979185415 0.484484365294591 0.492775690477471 1 1 - 22064797 22064828 22064812.333 22064748 22065146 - gene protein_coding_gene FALSE TRUE AT1G59930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59920.1); contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF14) -2.86544243137053 -19.1092984901847 3.23143811163062e-08 0.000236444326628012 12.4605753358366 9.95593982088132 -2.86544243137053 0.193909488965696 AT1G30530_at 6.15986361820738 6.36486641582059 4.58824704576981 4.64819666729322 4.29032898575541 4.23893163808573 7.25895544937577 7.13104227664687 6.75856332357085 7.46677909010817 6.00927754517482 7.68549572031369 6.2279130029999 6.27285482169555 6.81577925471462 6.99744750160631 5.61978871694884 5.87909620743926 6.63200089492579 0.251868739445915 0.243699854386083 0.267965497948535 0.266877924598490 0.251734432748904 0.247739882461477 0.259509750504072 0.260693748985807 0.252527502461483 0.243699854386083 0.251510512009328 0.249480210885953 0.250261826206162 0.248889304466776 0.247399269213484 0.243699854386083 0.250886800112914 0.243842115252911 0.243699854386083 1 1 + 10815788 10816237 10816009.5 10814641 10816565 + gene protein_coding_gene FALSE TRUE AT1G30530.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin Identical to Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol-3-O- rhamnosyltransferase) (UDP glucose:flavonoid 3-O-glucosyltransferase) (UGT78D1) [Arabidopsis Thaliana] (GB:Q9S9P6;GB:Q8LAI9); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17050.1); similar to UDP-glucose:flavonoid 3-O-glucosyltransferase [Vitis vinifera] (GB:BAB41020.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.40062351447996 -18.8860969174274 3.55936020722575e-08 0.000260367199158564 12.4329646906682 12.2805061950676 -1.40062351447996 0.0439925144388230 AT4G18970_at 4.74757763109542 5.37333585646004 1.94951738528426 2.00543884379553 2.05046054521002 2.31769552525087 5.56757616996831 5.71294862488816 8.139140843226 6.84320439303591 7.54110084016462 8.76273832268424 6.76950404383561 6.76223347725487 8.61940492790296 7.76015640386641 3.33768180177448 6.77826194300232 8.45960988381988 0.319803751254908 0.324832773125551 0.346580896292077 0.350203205853156 0.34507496614666 0.336889556601854 0.319803751254908 0.319803751254908 0.324449456407177 0.326293276659434 0.319803751254908 0.320790247471946 0.319803751254908 0.322394908258858 0.319803751254908 0.319803751254908 0.32973063739836 0.326687544967996 0.319803751254908 4 4|0 -|/ 10389327 10390073 10389682.1 10389122 10390928 - gene protein_coding_gene FALSE TRUE AT4G18970.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G45670.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -2.02109065784219 -18.8242772794061 3.65663893481981e-08 0.000267446571692721 12.425177950232 11.1432539527881 -2.02109065784219 0.120797640817692 AT1G04680_at 7.82611221765274 7.86689099044749 4.46234715305103 4.53390341620297 5.46761763752463 5.67704811869893 8.17240956832823 8.45171735078367 9.57686977048674 8.7020417526883 9.92259242645497 10.2172399995576 8.33638858218119 9.3781969757135 9.9418054561083 8.02732527755543 7.1063823469581 9.0160001624176 8.49289205076645 0.213999379611607 0.212923622452976 0.245944772361610 0.237129017762023 0.219936904361839 0.239560441291037 0.209590837706599 0.209590837706599 0.218455102859075 0.209590837706599 0.209590837706599 0.214982371381637 0.214665573747164 0.214456701344083 0.212101266126262 0.21111601025505 0.217781005815425 0.209590837706599 0.214265269696240 1 1|0 -|/ 1304066 1304900 1304487.1 1303528 1307881 - gene protein_coding_gene FALSE TRUE AT1G04680.1 pectate lyase family protein Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13710.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.48737328585623 -18.5730160058708 4.08375159531709e-08 0.000298603916649586 12.3928884298276 15.5158437705940 -1.48737328585623 0.0620726528548798 AT3G54090_at 6.49951755213604 6.52269545351592 5.1291745582439 5.3041228658108 4.87644371713579 4.89099771544895 5.82393734270177 5.98096420174004 5.79390296564174 5.7903676023974 3.52912931962078 4.13169024490119 4.280604306611 3.68962302068829 5.15935277447371 5.54165316913848 5.31961940802993 4.50907126589434 6.61584785092358 0.231964149206638 0.232792431611889 0.231031523062331 0.232583447311654 0.234517350605464 0.240097081420245 0.234255084181964 0.235929474126611 0.237671967178262 0.230959208848130 0.235310189152362 0.231953115502772 0.241131065498354 0.23335899438057 0.235034934250709 0.230407314520507 0.243835892522979 0.242861496699173 0.238711921352038 3 3 + 20040233 20040749 20040541.636 20039102 20040964 + gene protein_coding_gene FALSE TRUE AT3G54090.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G69200.1); similar to Os01g0851000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044818.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT81682.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -1.35160356217405 -18.4320411985240 4.34761066275388e-08 0.000317853815553936 12.3743101237317 10.9218812150036 -1.35160356217405 0.0409570994981291 AT3G02380_at 7.94654308278798 8.12262878402265 7.54319751554318 7.4136227917672 7.50296722670301 6.93366796836307 11.2690145178106 11.1551268668499 10.6472160723365 10.8594338291035 9.11267906087722 9.5664336977250 9.5897682716981 9.38380734965844 9.05972106303457 10.6374714585680 9.66845503112984 9.03073552255896 11.1455935439996 0.188200502804076 0.177398829993930 0.188986751641391 0.198203349050440 0.187873162722318 0.192720546309932 0.170207528134137 0.173132492091624 0.174106074769255 0.173101389424297 0.175686826981208 0.169603552603930 0.170952425170757 0.173115893101114 0.168243634011985 0.172386970416320 0.173268909467830 0.172716924860434 0.173108959252310 3 3|0 -|/ 487446 488103 487759.556 487243 488700 - gene protein_coding_gene FALSE TRUE AT3G02380.1 COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins Identical to Zinc finger protein CONSTANS-LIKE 2 (COL2) [Arabidopsis Thaliana] (GB:Q96502); similar to CO (CONSTANS), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15840.1); similar to Col-2-like protein [Brassica rapa] (GB:AAR90093.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -1.82645582692363 -18.2033817432908 4.8170422083665e-08 0.00035198127416534 12.3434465401793 18.680953634424 -1.82645582692363 0.107359161579249 AT1G14840_at 5.26936010444317 5.1776181494805 3.25547473804704 3.28862266907692 4.52441004990395 4.20138079527006 6.92583307164226 6.76873212158342 6.20952807428223 6.07032052815366 5.65710778128124 6.75471486689514 5.56079971791366 5.39046370749772 6.32011110841786 5.73425005743295 4.61119077172681 4.8216498432808 6.72269405796693 0.255575255464297 0.244715737903008 0.247815092289460 0.260792441794294 0.240328037225315 0.251441245315531 0.245424968216683 0.257666717851791 0.249767689488061 0.247040231692650 0.24454274274984 0.244343869794282 0.241842756143197 0.261626659899587 0.242710805099541 0.246851592183204 0.243012929929388 0.245472732013845 0.241972772731062 1 1|0 -|/ 5112424 5113129 5112852 5112079 5115423 - gene protein_coding_gene FALSE TRUE AT1G14840.1 ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G68060.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) -1.47290435185401 -18.1934182863804 4.83874679531391e-08 0.000353470453397681 12.3420807545817 10.8966623967343 -1.47290435185401 0.0644135354755062 AT3G29670_at 5.82127722713955 5.84181396881485 4.73038909948096 4.97740932968424 5.7176205596475 5.64905779744345 7.00530158558384 6.85897290711928 6.93480403227065 6.7190310708508 5.53430782865483 5.2296336918992 4.85882334749702 5.33455649495858 5.13740077559414 5.80839458492989 5.87638022752042 5.09081788630991 7.12230325284192 0.23534185869402 0.235778677982077 0.229459659465143 0.224655578773879 0.240396252381702 0.236262116927298 0.228033059864527 0.22947105338162 0.228748817960233 0.225247057100262 0.232665774821540 0.224171667137953 0.237141609472801 0.232950957627267 0.229489811071197 0.228517126063 0.239198813646496 0.232222876193845 0.226352034927675 3 3 + 11531213 11531748 11531459.727 11530351 11531829 + gene protein_coding_gene FALSE TRUE AT3G29670.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G29635.1); similar to AT5g39050/MXF12_60 [Medicago truncatula] (GB:ABE91277.1); contains InterPro domain Transferase; (InterPro:IPR003480) -1.33990616145882 -17.5530525498392 6.49246770536585e-08 0.000473820293137599 12.2504469075618 11.9673147126934 -1.33990616145882 0.0512059616049121 AT2G31890_at 6.13322114638065 6.32535618507596 5.40242314685926 5.45972390722494 5.66246510139301 5.68869073625286 6.47956196905174 6.449639826796 5.94424703456545 6.81888764532933 4.05333648338702 4.13235327137548 4.6804944883964 4.18329441820526 5.59369651625351 5.70619197119387 5.67137215309037 4.75117875095122 6.88988929810982 0.170628490529176 0.170628490529176 0.176663294569730 0.17511785175429 0.171604643818861 0.175264570376161 0.172476345618448 0.170628490529176 0.186772648059447 0.180260273262131 0.175880314804989 0.1852624791834 0.170628490529176 0.172092810602589 0.177708792950712 0.173084710978695 0.172926826710149 0.173223701232878 0.179792015950949 2 2|0 -|/ 13564445 13565037 13564768.2 13564008 13566844 - gene protein_coding_gene FALSE TRUE AT2G31890.1 similar to Os03g0425000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP20833.1); contains InterPro domain RAP domain; (InterPro:IPR013584) -1.24906864747757 -17.3646298136327 7.09289414577032e-08 0.00051756848581686 12.2219709530650 11.6488841270167 -1.24906864747757 0.0353736469363549 AT4G12970_at 5.58902378407789 5.53666270995512 2.28187050669860 2.74454432115665 3.65168757685038 3.29912318406084 4.95817690895611 4.77163771168485 5.52192380253917 5.75609343405662 4.40900407299755 6.8686550737024 4.58000211529747 4.4263197500858 6.7291595430779 5.00975463392202 2.96412476447800 4.01603681129024 7.02156123458127 0.258626973085521 0.242340401955916 0.261202830084026 0.265281029064954 0.245236740930487 0.242019049337412 0.241388112469918 0.247103244118735 0.242432100373627 0.243315546407916 0.238874591474876 0.246618094350174 0.24059225797471 0.242042146401016 0.243166132574549 0.246320574373472 0.271495343299762 0.238874591474876 0.247927548276188 4 4|0 -|/ 7586264 7586741 7586411.111 7586140 7586846 - gene protein_coding_gene FALSE TRUE AT4G12970.1 similar to Os01g0914400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045180.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75419.1) -1.72202313813140 -17.2725338643953 7.40872612905099e-08 0.00054054065837556 12.2077892660739 9.59171163092945 -1.72202313813140 0.106102023600769 AT3G10720_at 8.55371695759896 8.90659417083977 5.35984158849209 5.72880226151038 7.24000670854329 7.1921128721757 9.23256695155512 9.33466052211626 10.0864228293506 9.79655260082006 10.0283730291082 10.4709682533608 9.54129813087984 9.5043141915631 10.1999089789543 9.20823656345817 7.4516832654023 9.52770347908858 10.1362334086711 0.155551810373985 0.159913221222477 0.194148698880566 0.190423083319305 0.167759000376525 0.174022968202811 0.16148529423775 0.161320818060776 0.160117713543844 0.160633469128145 0.158558936491360 0.16248730762631 0.162786890755723 0.160205977235038 0.160502984415569 0.158370915482609 0.169846716058753 0.158828977078804 0.156666449372737 3 3 - 3354667 3355417 3354932.818 3354452 3357619 - gene protein_coding_gene FALSE TRUE AT3G10720.1|AT3G10720.2 pectinesterase, putative similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to pectin methylesterase isoform alpha [Vigna radiata] (GB:AAF35897.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070)|similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042865.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:AAT38097.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -1.57076800132542 -17.0603250427818 8.19798260407007e-08 0.000598042830966912 12.1744347740463 17.4425195954827 -1.57076800132542 0.090481482042516 AT2G29120_at 8.68808962333885 8.80901013510301 7.85419667177982 7.91745885373804 7.95279236444918 7.75679812022477 7.21158490827991 7.00268643225969 7.47653712215153 6.10854911761353 4.40201779329458 3.82049365608291 4.33256915610892 4.91410033030302 3.49393909656342 3.68506538551114 4.38181523184693 4.04916818915882 6.48387904531929 0.235098712316098 0.235098712316098 0.237029856398986 0.236452329039894 0.240298671915662 0.243223297398907 0.237799023741723 0.243073748460203 0.260579037470876 0.235098712316098 0.238365234162297 0.242507078803119 0.243954039711205 0.247657223817941 0.252478324598576 0.251017824047691 0.246416705038860 0.242450824513909 0.235098712316098 2 2 - 12518605 12519233 12518839.727 12518369 12522972 - gene protein_coding_gene FALSE TRUE AT2G29120.1 ATGLR2.7 (Arabidopsis thaliana glutamate receptor 2.7) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GLR2.7) [Arabidopsis Thaliana] (GB:Q8LGN0;GB:O81080;GB:Q8RY02); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.8 (Arabidopsis thaliana glutamate receptor 2.8) [Arabidopsis thaliana] (TAIR:AT2G29110.1); similar to ATGLR2.9 (Arabidopsis thaliana glutamate receptor 2.9) [Arabidopsis thaliana] (TAIR:AT2G29100.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.5 precursor (Ligand-gated ion channel 2.5) (GB:Q9LFN5); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -1.30614513118341 -16.8424342849041 9.10733093510235e-08 0.000664197645097014 12.1391756054725 13.3113527385901 -1.30614513118341 0.054909399695445 AT1G58270_at 7.17238050997467 7.92985011529575 1.12731209954234 1.72920765702943 2.55196819626722 2.14876271965508 6.9360374526056 6.56894697264001 5.02549423877281 5.37022279945979 5.73096080757714 7.42610855100255 6.04323518099098 4.85987690518691 6.22413184457985 2.85236967764124 3.50983888951992 6.13436326660079 4.83425626235997 0.270336242295430 0.260268998886356 0.280572617371642 0.270083584460548 0.268477849474265 0.265734960088548 0.257253431908772 0.263584826472618 0.268886375697188 0.259297750928279 0.258508035053077 0.257253431908772 0.257253431908772 0.265218582268361 0.271150444004624 0.261865873161721 0.257253431908772 0.274758618314992 0.259410044324170 1 1 - 21616082 21616759 21616406.636 21615781 21617782 - gene protein_coding_gene FALSE TRUE AT1G58270.1 ZW9 ZW9 mRNA, complete cds similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28220.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -2.49576911049113 -16.7622890101040 9.4696934002018e-08 0.000690530042742716 12.1259410968183 9.73269241900207 -2.49576911049113 0.192189537472483 AT3G13065_at 6.2334248598471 5.75336384783954 4.14653538795061 3.92279052741855 4.53869056979346 4.49172260901356 5.80247905049314 5.1591400717136 5.82422495251733 6.56804239416283 3.88002022950038 3.3487675383901 3.85935858404962 3.24697322350272 3.23874301483706 3.5103784966155 4.08045065104476 3.32121178717676 5.97843418095147 0.32042407411891 0.316610195342497 0.315476950706239 0.321530669258506 0.318131597063706 0.318465092270596 0.325926845689662 0.314782392108746 0.332345180939720 0.327894296976114 0.314782392108746 0.322992356033149 0.319099959678421 0.314782392108746 0.319949991240688 0.315700553163963 0.314782392108746 0.316255650866029 0.320101777292882 3 3|0 +|/ 4189819 4190584 4190207.444 4187768 4190870 + gene protein_coding_gene FALSE TRUE AT3G13065.1 leucine-rich repeat transmembrane protein kinase, putative similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G78980.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91085.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -2.01249820958345 -16.7051302413239 9.73795451759813e-08 0.000709702125242551 12.1164134227595 9.8481709237671 -2.01249820958345 0.144437042418171 AT1G75680_at 8.81116957617568 8.92225821085032 6.0487990293504 6.35680156784466 7.74436751155428 7.5959891628669 10.2432613953110 10.2221511983512 10.1847348159714 10.3436304540741 10.7583941917259 10.7618662463329 10.1595911254885 10.1435356757231 10.4072049113262 9.94635794729982 9.39842141245554 10.4858505134335 10.2909598298343 0.167720641578993 0.165533245119049 0.213309115008155 0.206880099708875 0.188715381864749 0.187890003875993 0.164173897928213 0.162334778936696 0.168470345008629 0.165017318431584 0.165653201865728 0.163909585155474 0.167750798981376 0.162671327654088 0.163268520417535 0.162334778936696 0.168871470754863 0.162334778936696 0.162334778936696 1 1 - 28420890 28421544 28421132.545 28420713 28423190 - gene protein_coding_gene FALSE TRUE AT1G75680.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1); similar to Os06g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058583.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE81087.1); similar to Os09g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063771.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.31433819546070 -16.3938887344458 1.13560092593331e-07 0.000826717474079453 12.0631997347402 18.5084802663379 -1.31433819546070 0.0623160264663306 AT1G27120_at 4.50113845837557 4.60061465003958 2.76712491004158 3.09214507808825 3.42962635818517 3.52568325448819 7.18550968677409 7.57032115844624 6.31265444701741 7.17427352388057 7.43561913182388 7.9108825698182 6.63048722049306 7.20533722188153 6.86535227991201 6.19722913014305 5.03133254708631 6.08896443765745 7.07463746726931 0.241633926375508 0.243293590457706 0.248357471001774 0.242386156216003 0.243079680314243 0.244829856878135 0.249227600308503 0.23988238921139 0.247811979523688 0.240359442849694 0.242497376010035 0.240196789042869 0.23988238921139 0.242786786149512 0.240651360171254 0.23988238921139 0.24923883188682 0.243576724910351 0.23988238921139 1 1 + 9423096 9423870 9423584.091 9421164 9424056 + gene protein_coding_gene FALSE TRUE AT1G27120.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74800.1); similar to galactosyltransferase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83183.1); similar to galactosyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99414.1); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -1.47197783345595 -15.9944950395896 1.38889213470807e-07 0.00101028013878665 11.9914643286066 11.3462733010087 -1.47197783345595 0.0903935955343577 AT4G19710_at 7.06640915669294 7.17224283458265 5.20869018259489 5.55049113108519 6.29712961810481 5.88004057842209 8.76061117313047 8.52498967664003 7.17861596621193 8.13517971361646 6.36602634303071 6.97852235796784 6.55978805943278 6.50282186309273 6.70832280035267 6.75185490610015 6.69087451530702 6.85003447763994 7.69036356609887 0.223555015753446 0.217991965943959 0.23589229874886 0.226672175057809 0.220958675948926 0.226552184566308 0.226505534088900 0.220460485408874 0.231943528061739 0.223959798259284 0.217991965943959 0.220591387503326 0.225394725198202 0.222673768562195 0.224002415799824 0.220434809806228 0.223224825671342 0.240325369458639 0.220849608247886 4 4|0 +|/ 10728797 10729522 10729242.4 10724865 10729778 + gene protein_coding_gene FALSE TRUE AT4G19710.1|AT4G19710.2 AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase|AK-HSDH/AK-HSDH II Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. Identical to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) (Beta-aspartyl phosphate homoserine 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (AKHSDH2) [Arabidopsis Thaliana] (GB:O81852;GB:Q3E9Y8); similar to AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I), aspartate kinase/ homoserine dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G31230.1); similar to Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I [Medicago truncatula] (GB:ABE90460.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05981.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05983.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Bifunctional aspartokinase/homoserine dehydrogenase I; (InterPro:IPR011147); contains InterPro domain Homoserine dehydrogenase, NAD-binding; (InterPro:IPR005106); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -1.56949887466003 -15.9546605889844 1.41743285662148e-07 0.00103089891662081 11.9840875814739 13.9796174175773 -1.56949887466003 0.103473001744395 AT1G54040_at 7.80576187850685 7.98351242379657 4.17276306861514 4.59571286076521 3.52185382602728 4.14885042976965 9.63517493615394 9.6689781739191 8.44600907476172 8.93857697890505 9.63404074451765 9.70314634911075 9.6288030123582 9.3131638792493 9.8112265625119 9.95031101801145 8.93760462012203 9.57912438733096 8.3328098804841 0.170299720685180 0.170817996457469 0.186797722795236 0.196264984046815 0.185692623946433 0.18892968534562 0.170299720685180 0.172681864213592 0.185639016219935 0.175183016290602 0.170299720685180 0.171683407381298 0.171683264839845 0.17615655422825 0.172865838678139 0.171250589821062 0.179556936980501 0.182193375454552 0.176640403794088 1 1 - 20174675 20175221 20174915.545 20174383 20177617 - gene protein_coding_gene FALSE TRUE AT1G54040.1|AT1G54040.2 ESP (EPITHIOSPECIFIER PROTEIN) epithiospecifier protein similar to ATMLP-470 (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470) [Arabidopsis thaliana] (TAIR:AT3G16400.2); similar to epithiospecifier protein [Brassica oleracea var. italica] (GB:AAY53488.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -1.83317477326594 -15.9537350509152 1.41810372138413e-07 0.00103124502619054 11.9839156945331 15.5126473912118 -1.83317477326594 0.134577034211902 AT4G36360_at 6.52604285607248 7.01374575166459 2.86225719066045 2.78097691314992 2.84188388420248 3.65819439313253 8.57775624171438 8.74442659892409 6.99318276491164 8.2944418949946 8.47049479126979 9.47177632037072 7.64337935403112 8.17959490116177 8.95908114881193 8.27445572208312 6.87729770226364 8.11716242523992 8.19621478531124 0.216763540529865 0.197405972003787 0.224970544322902 0.218736370918228 0.215413022498933 0.22055502053896 0.198913348432707 0.197407799106165 0.208797179708950 0.20221110250332 0.200841892885635 0.204769369031638 0.201318601089754 0.200762916055718 0.197405972003787 0.197405972003787 0.206422303790415 0.201747527303596 0.197405972003787 4 4 - 17176865 17177483 17177175.727 17176345 17181264 - gene protein_coding_gene FALSE TRUE AT4G36360.1|AT4G36360.2 BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Prunus persica] (GB:AAW47739.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91082.1); similar to putative beta-galactosidase [Lycopersicon esculentum] (GB:AAF70825.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -2.12922797644635 -15.8858726247238 1.46827181903057e-07 0.00106758043961713 11.9712514264909 13.4142113673867 -2.12922797644635 0.167657949530812 AT1G66940_at 7.25764043667215 7.56198510853376 2.02930106889509 1.89893748782764 3.67485952273414 3.00406527580250 4.03718258731735 3.14226812848841 8.6980870600302 5.95635527269681 6.04219611015729 7.63132346561528 4.73556825989944 5.99530375301023 7.06062700753274 5.75156167348567 1.8041503740766 4.78733913220131 7.85341163192038 0.288113351227659 0.280692377887076 0.282210079308753 0.285763592919509 0.272838410632852 0.275955692854943 0.285816337268081 0.285843696367696 0.286919478157051 0.277384842440219 0.274480186793369 0.274191129011476 0.275962264030201 0.282076769690356 0.272838410632852 0.275031438405655 0.287140932792129 0.276085844306872 0.272838410632852 1 1|0 -|/ 24976906 24977914 24977459.222 24976691 24978454 - gene protein_coding_gene FALSE TRUE AT1G66940.1|AT1G66940.2|AT1G66940.3 protein kinase-related similar to kinase [Arabidopsis thaliana] (TAIR:AT1G67000.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78903.1) -2.43729374632827 -15.7387766721375 1.58395531374473e-07 0.00115137711756104 11.9433813955451 10.5650933071404 -2.43729374632827 0.201848600301138 AT4G04840_at 5.1789285272795 5.87031154538172 2.63765652694329 2.11362249900054 1.85197999293475 1.91986259414437 6.71487037816612 6.63213257320846 8.17135527671464 7.05548788161633 8.18281665010738 8.67118486903441 8.34689952010457 7.9834781957737 8.61554036023425 8.7807880683328 5.7729082073731 8.13766469987734 8.7564652654091 0.263244217739873 0.262283903642546 0.285079517444178 0.28236191220808 0.274329689837188 0.289762018103964 0.266499396471253 0.257869976890878 0.26154017860911 0.257648345667015 0.258410982749241 0.257648345667015 0.257648345667015 0.257648345667015 0.2680605419148 0.257648345667015 0.276106628045382 0.257991160704539 0.260961338412082 4 4|0 +|/ 2449772 2451249 2450315.5 2449558 2451587 + gene protein_coding_gene FALSE TRUE AT4G04840.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21850.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) -1.9506532113226 -15.6803403343473 1.63270584951805e-07 0.00118632407025981 11.9321476670152 12.1428436859330 -1.9506532113226 0.151269548658350 AT3G29030_at 6.94876489902205 6.73016670553401 3.66084663657951 2.86501838461348 3.90904681955227 4.05720468488855 8.31912864069192 8.24940537582557 8.04488971809467 8.26160143206976 9.47806831326273 9.7257704735738 8.256475264556 8.50427857322108 9.54655771271528 8.21097220569103 6.51167748541991 7.8700268930915 8.80735303011423 0.209100652770142 0.206224475356065 0.220814137276819 0.218149046524584 0.219076355210955 0.233664447863160 0.202248339578325 0.204505946965107 0.211815651749207 0.202248339578325 0.208441810744682 0.215190730865079 0.202248339578325 0.206807396720290 0.213908332660441 0.202248339578325 0.213407331271841 0.207986060561448 0.203169903595616 3 3 - 11012783 11013761 11013335.455 11012545 11014595 - gene protein_coding_gene FALSE TRUE AT3G29030.1 ATEXPA5 (ARABIDOPSIS THALIANA EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A5 precursor (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) (EXPA5) [Arabidopsis Thaliana] (GB:Q38864); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin [Cicer arietinum] (GB:CAC19183.2); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.89857015104737 -15.6724541887036 1.63941210637143e-07 0.00119103289527884 11.9306245059932 14.0345776476472 -1.89857015104737 0.145606744481675 AT4G23300_at 8.0832664090452 8.07080150394336 6.54892353816062 6.19976444728201 7.5829348787301 7.16139937852885 8.5633475326193 8.3543155639818 8.49419342101824 8.38176398808912 7.1174929850989 6.80583694173633 6.66981516103393 7.05495440966677 6.67343831352454 6.624051971338 6.44307716729825 6.60932203244046 8.32522348052241 0.207807732068734 0.209280510175567 0.217107064124138 0.208729154265243 0.201371349411545 0.224919032124754 0.201371349411545 0.204494588732627 0.210816701041652 0.201371349411545 0.206741649181848 0.203249875080869 0.207924440062104 0.204879619885383 0.201371349411545 0.201371349411545 0.209973615748628 0.219306101740454 0.202782871325953 4 4|0 +|/ 12183772 12184498 12184232.9 12181942 12184714 + gene protein_coding_gene FALSE TRUE AT4G23300.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23210.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.52266109941573 -15.6413863353382 1.66613230249997e-07 0.00121027850453598 11.9246073279202 15.1456652828583 -1.52266109941573 0.101418594768820 AT1G72040_at 6.54509811160059 6.6349136580353 5.28178220549411 5.58414066838522 5.51040362119331 5.52673617755829 7.38866776163462 7.45147633253917 5.65314458890711 5.88135403303841 4.63910657078597 5.0044573406938 5.17798398389592 4.36267491466335 5.34410136881713 5.35693507271921 5.79902613762289 4.69775908306092 6.32328492871637 0.252333175156924 0.251357169682792 0.246183488564451 0.248116166099487 0.246183488564451 0.258555562852931 0.250875782473123 0.255899304705095 0.250970404910896 0.246814400990321 0.255315766716756 0.248607439281316 0.246183488564451 0.246590639917349 0.254828382451656 0.246183488564451 0.255494527192908 0.250447352807139 0.247778387601848 1 1|0 -|/ 27115861 27116552 27116214 27115556 27118004 - gene protein_coding_gene FALSE TRUE AT1G72040.1 deoxynucleoside kinase family similar to unnamed protein product [Homo sapiens] (GB:BAD18437.1); contains InterPro domain Deoxynucleoside kinase; (InterPro:IPR002624) -1.21705612782479 -15.6377011949603 1.66933383997892e-07 0.00121243716797669 11.9238918328541 11.7405773550149 -1.21705612782479 0.0557276703823336 AT1G15290_at 8.30783052843348 8.34897497140618 6.80009447783294 6.85787844046567 7.6330766816837 8.07668681400028 9.31331223826505 9.41040081386713 9.7644844622953 9.5870919219483 8.34557082808476 9.05916468394208 8.22450324332944 8.13037501799406 8.63997670089034 8.47575324948232 8.04666170767133 8.48206249688174 9.58816464848769 0.167493469737188 0.162470398675997 0.187517543479131 0.185150444662031 0.176204846508877 0.166354093797753 0.169800225426378 0.164398466361715 0.170899601709074 0.164291355165196 0.164790255428338 0.163943162326372 0.167074583582267 0.168930428667619 0.164770178803394 0.164959026411839 0.168085997131749 0.168533663831071 0.16329042199764 1 1 - 5257326 5257894 5257650.091 5257041 5264809 - gene protein_coding_gene FALSE TRUE AT1G15290.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G28080.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G01320.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to H0811D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86110.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.36213369385328 -15.6338711093438 1.67266857519429e-07 0.00121469191930610 11.9231477987138 17.1295762883834 -1.36213369385328 0.0795389041685413 AT1G78180_at 5.14040530220439 4.99012041016207 3.84600549673503 3.80898103194792 4.20969261424239 4.20485327526819 6.23241815937531 5.97512817294228 6.0416775674614 6.38982917314596 5.39140043999323 5.97528020158905 5.60331172364358 5.55623157011741 5.93113003825712 5.5985702767762 4.34638396553416 5.54588898946976 6.43751004649951 0.266054132943493 0.252123405637866 0.274150340941746 0.281418587630415 0.252673218465977 0.271821793570329 0.251491124153907 0.261528351842278 0.258882658111694 0.251722823804819 0.252057204935837 0.253602775558789 0.257923915849963 0.260565064552083 0.251491124153907 0.255668782179995 0.275998520167244 0.256412113591189 0.255802577172781 1 1|0 +|/ 29422602 29423231 29422991.8 29421806 29423533 + gene protein_coding_gene FALSE TRUE AT1G78180.1 binding similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G64970.1); similar to 80C09_21 [Brassica rapa subsp. pekinensis] (GB:AAZ41832.1); similar to Os03g0191100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049231.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -1.18164125915951 -15.4302733040202 1.86110610504785e-07 0.00135060470043322 11.8830070784351 10.6925490143805 -1.18164125915951 0.0519676891560299 AT3G10840_at 6.39249791427727 6.29960054215377 4.48973669514857 4.13028057171425 5.42158166129831 5.03445845945363 8.1297436701025 8.00250125150716 6.63967268868629 7.05884489887291 6.25851144588159 7.18552910617855 6.3006084413726 6.57428633826931 6.77635326076186 6.55341668637619 6.08605924474119 5.8813660241454 7.03397290525369 0.184264263997653 0.181275365381286 0.190244168030815 0.205811654070045 0.177131391066738 0.197242449680318 0.188058893459063 0.181434058577617 0.188102903714055 0.177131391066738 0.194446450499778 0.182205904592441 0.187171523885971 0.177131391066738 0.180380624786249 0.181725456276846 0.186700331515090 0.185268419191519 0.185476694928929 3 3|0 -|/ 3391320 3392032 3391627.8 3391070 3393295 - gene protein_coding_gene FALSE TRUE AT3G10840.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G15490.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95656.1); similar to Os12g0118400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066007.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -1.44794267170580 -15.3374302501008 1.95480468574720e-07 0.00141821079950959 11.8643112490650 12.6689733370753 -1.44794267170580 0.0953990628579198 AT2G40960_at 6.32468530684789 6.06799315176777 5.05287864166291 4.31972413587409 5.19649795427509 4.46019918972248 7.1041048948815 6.52791194075624 6.90031299084891 7.8813560938119 5.11540344502619 4.52603020932022 4.15067888369898 4.48160997838276 4.36905195242684 4.95648136177751 4.87722650305966 3.57156047566952 8.08508409684936 0.239333001642806 0.2426833174151 0.239038659695917 0.249107658198997 0.245652614428772 0.243287649990053 0.261140289116886 0.249999815537008 0.262335311575328 0.243152598064765 0.253577881811425 0.239038659695917 0.242436785429965 0.240341434252089 0.243809144965829 0.239038659695917 0.250465723767442 0.247168614192708 0.251006663587518 2 2|0 +|/ 17103601 17104412 17103960.5 17102600 17104532 + gene protein_coding_gene FALSE TRUE AT2G40960.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G56680.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -2.43254727625644 -15.1882324767859 2.11660106069026e-07 0.00153474742910651 11.8337403351515 11.6958776078103 -2.43254727625644 0.210355086100644 AT2G40100_at 7.97756889678657 8.22327209274438 6.28071121389391 6.69701370939125 6.30704003026707 5.92477488010503 8.9283774849183 8.90797122040076 8.71850105352346 9.69060679415817 8.40450720006062 8.85974838154234 7.13479835546098 8.1889038922276 8.96757784565597 9.00044683744496 7.01269413445778 8.20659096132418 8.73369067463274 0.204276560755922 0.201808076070127 0.213339360507654 0.205820748809569 0.214429309269614 0.226912965957183 0.201059536649086 0.216236231980598 0.220396731435234 0.205735475341003 0.197885249170137 0.204139887447554 0.209952609557206 0.197323314321318 0.195463878570099 0.201085371928108 0.217885939857406 0.211498667154710 0.197897239835880 2 2 + 16753248 16754244 16753831.273 16752881 16754478 + gene protein_coding_gene FALSE TRUE AT2G40100.1 LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidopsis Thaliana] (GB:Q9S7W1;GB:Q8L9J2); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -1.51630176085725 -15.1622201355857 2.14631149388821e-07 0.00155607583306895 11.8283427919917 16.0405951702934 -1.51630176085725 0.106709060048043 AT3G63200_at 4.28743540484176 4.1602632810201 2.05165491982949 2.08373848313411 2.36973663829269 2.49122013785217 6.89932401363372 7.18757641861816 5.29822494489544 6.48593517800987 7.41787990673905 8.42194517386584 6.98927879308979 7.14768731262792 7.71510623357394 5.6797804935832 5.24251923556541 6.42218164132294 5.78673510498404 0.256717100338033 0.262265702252463 0.273167386309865 0.273483757011729 0.276018612517669 0.276035390045143 0.257566358910707 0.266306164230428 0.261452821259526 0.256717100338033 0.264029760307559 0.268009027592551 0.258134190742221 0.256717100338033 0.266015705992590 0.256717100338033 0.256717100338033 0.256717100338033 0.256717100338033 3 3 + 23357678 23358313 23357986.182 23356877 23358539 + gene protein_coding_gene FALSE TRUE AT3G63200.1 PLA IIIB/PLP9 (Patatin-like protein 9); nutrient reservoir similar to PLA IIB/PLP6 (Patatin-like protein 6), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT2G39220.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) -1.18098998095921 -14.9754978735671 2.37375214499961e-07 0.00172002080426672 11.7889963991945 10.3096248745323 -1.18098998095921 0.0586983955140735 AT4G13560_at 5.42614089265613 4.76691195497969 3.30512812367626 2.77468973746989 2.41124936225732 2.22162475606822 5.67070914437991 4.78069363854807 7.66501970878934 6.06136341824503 5.0486683909063 4.37973377829028 4.11995724680594 4.00164472551774 4.76859616396164 4.15856224915484 3.84812183580348 4.8296531270861 6.60085085728745 0.279597560990283 0.276504985725385 0.281140981168263 0.284466726846150 0.289798707111695 0.293250707552358 0.273646612074895 0.276145037633970 0.293117506787161 0.286828423652521 0.274769996591603 0.276836754731622 0.275337192539888 0.273646612074895 0.273646612074895 0.278939464787727 0.277906078123639 0.281535979837778 0.286958877289006 4 4|0 -|/ 7879790 7880281 7880003.5 7879557 7880379 - gene protein_coding_gene FALSE TRUE AT4G13560.1 UNE15 (unfertilized embryo sac 15) similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to putative LEA III protein isoform 1 [Corylus avellana] (GB:CAC39160.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -2.43215919226142 -14.9126513941872 2.45625208182578e-07 0.00177955463328278 11.7755118011471 9.50469937682013 -2.43215919226142 0.215036193694284 AT1G49010_at 6.92544628409203 6.33886770342187 5.49644900755764 5.42824651886908 5.25281293403573 4.92787475978578 7.8558062386768 7.56876450113169 7.41984473177519 7.57588401435126 5.86636963136768 6.26421146568136 5.45996503886172 6.09905971537532 6.72379776318142 6.01504157198354 5.97389095030378 6.74198882469246 7.60233750144405 0.227012217812219 0.218363079318269 0.225482037370654 0.227390590657706 0.222715356850091 0.229918150496289 0.218363079318269 0.225874276182946 0.226594110323275 0.218612632752385 0.221415066198896 0.221578294422066 0.223245986109558 0.228824216594349 0.219787315427846 0.220578082973375 0.230053326713335 0.219842184651096 0.218363079318269 1 0|1 /|+ 18137033 18137384 18137251.5 18136313 18137593 + gene protein_coding_gene FALSE TRUE AT1G49010.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G08520.1); similar to MYB transcription factor MYB109 [Glycine max] (GB:ABH02851.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.6427617528889 -14.8528893128059 2.53767846795293e-07 0.00183829428218511 11.7625740885212 13.0621481781319 -1.6427617528889 0.126779967999788 AT4G35770_at 10.4299616063022 10.2642642529300 7.93792047409326 7.7471066522832 11.1365458343821 10.7298695943552 7.37370276856078 7.55790523836756 9.57987014730848 8.92394865140843 6.357666726034 5.56244723368987 6.56495630959308 6.77777623800285 4.94076701362216 6.53338765483355 6.89945371993787 6.78799224893663 9.98291052736803 0.216226742854804 0.222790124023384 0.221675324532243 0.221351106933649 0.223406507597313 0.225938542911652 0.226697023713906 0.216782207973781 0.228832430427117 0.21606491476043 0.221630045428863 0.226067577199428 0.221329419770133 0.222951282255157 0.246918691034303 0.218275039409299 0.228388443612653 0.227015499224219 0.21606491476043 4 4|0 +|/ 16945085 16945935 16945427.4 16944946 16946197 + gene protein_coding_gene FALSE TRUE AT4G35770.1|AT4G35770.2|AT4G35770.3 SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. similar to senescence-associated family protein [Arabidopsis thaliana] (TAIR:AT5G66040.1); similar to din1 [Raphanus sativus] (GB:BAA20356.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -1.35555918835439 -14.8507581498691 2.54063726768675e-07 0.00184018357298551 11.7621106353495 17.0464757202141 -1.35555918835439 0.0887791747576194 AT2G34640_at 6.69743337220223 6.68668166530552 5.367732796093 5.77565812598059 6.02990761918353 5.89943787923564 6.86075468871911 6.92157940241727 6.19093395872758 6.93531343898762 4.92652323222206 5.83770021514083 5.27593974401508 5.10647440740264 5.27301347517845 5.53154110147385 4.98418064647845 5.08903233742341 7.1461791787173 0.20396743416408 0.207057197393453 0.227632337389309 0.210823055650070 0.209738023238833 0.201288127873984 0.211697095804796 0.201288127873984 0.215149870911085 0.207296799482204 0.208101682504490 0.201847118837984 0.209427859131546 0.218270823811712 0.214556849485245 0.205695502016857 0.224157086872751 0.216607988206236 0.201730533105034 2 2|0 -|/ 14589159 14589893 14589478.222 14588965 14591778 - gene protein_coding_gene FALSE TRUE AT2G34640.1 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to hypothetical protein MtrDRAFT_AC144478g3v1 [Medicago truncatula] (GB:ABE93314.1) -1.26392652879925 -14.8453614663 2.54814697033501e-07 0.00184536803591662 11.7609364015214 12.2851612788393 -1.26392652879925 0.0748830292238073 AT1G30520_at 6.97454186341517 6.82429103025578 5.60954972760206 5.35340962993066 6.06513851637159 6.20211146988274 7.66138866725985 7.49767011941188 8.93739258697582 8.37312353575444 7.82343945158165 8.35843781780372 6.75597244558503 7.47502388398534 8.63260604134265 7.49752350835749 6.70358703703156 7.33497412204452 8.25257011656563 0.185296866282138 0.175205771857561 0.181917696920716 0.179170897918513 0.190182514181673 0.180047642216647 0.176776513191471 0.180935892893938 0.174860171278863 0.180090958589540 0.176527412765218 0.177981884958662 0.181295350181043 0.183704074361755 0.174946089429104 0.174860171278863 0.177643957824459 0.174860171278863 0.179802550534196 1 1 + 10812769 10813503 10813094.545 10810966 10813613 + gene protein_coding_gene FALSE TRUE AT1G30520.1 acyl-activating enzyme 14 (AAE14) similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT4G19010.1); similar to Acyl-CoA synthetase (ISS) [Ostreococcus tauri] (GB:CAL50517.1); similar to Os08g0130400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060922.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -1.19012689605219 -14.7778390842242 2.64422938980190e-07 0.00191468650115556 11.7461661274377 14.5703747704654 -1.19012689605219 0.0632889121315438 AT4G24700_at 5.9330520124483 6.32641343346508 5.64877417772423 5.78887434824707 6.02074409589892 6.11780964053144 8.91577078530335 8.85836934496528 8.01637606491716 8.46956338765344 7.65286571722556 7.59092644106587 7.5392116939358 7.4670373231708 6.85478799854862 8.59246258234113 7.56722717259657 6.98522850520557 8.76973814014589 0.241510215942305 0.243372897684491 0.257229846137819 0.266266195388260 0.247700328570994 0.268543399631584 0.244951324657737 0.24661517291571 0.259199112579001 0.247347668231162 0.242722897929396 0.238454592409263 0.24399630431051 0.240535932809834 0.261230814951118 0.238454592409263 0.261288401059941 0.249535376774562 0.254734858418837 4 4 - 12744826 12745154 12744975.182 12744632 12745323 - gene protein_coding_gene FALSE TRUE AT4G24700.1 similar to Os02g0595200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047311.1) -1.25084579837800 -14.6940756668147 2.76908133114606e-07 0.00200398415935041 11.7276393410638 14.6761147932397 -1.25084579837800 0.0748504754680812 AT3G10050_at 4.72982620404715 4.48072015934695 3.32932971750333 3.97401263055814 3.67717174180144 3.84972860822778 7.24969217876852 7.78718826141992 5.23809731595469 5.98099732427031 3.8722222597887 4.29906241644294 4.05196715338920 4.19920255660366 4.19565050201557 5.46075711060782 4.98607031363465 4.51282392498998 6.10837350383844 0.225510818991069 0.217984928181843 0.219872681563339 0.219134137285901 0.217984928181843 0.219716898234792 0.218517151080789 0.22866362864684 0.228666856873668 0.221064934245552 0.219531622560706 0.217984928181843 0.220668744546269 0.221339188839150 0.220929953350813 0.223102347048122 0.221687803323211 0.225447768733822 0.218184741128814 3 3|0 -|/ 3099209 3100027 3099514.2 3098730 3101766 - gene protein_coding_gene FALSE TRUE AT3G10050.1 OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase first enzyme in the biosynthetic pathway of isoleucine Identical to Threonine dehydratase biosynthetic, chloroplast precursor (EC 4.3.1.19) (Threonine deaminase) (TD) (OMR1) [Arabidopsis Thaliana] (GB:Q9ZSS6;GB:Q9SPF1); similar to ATSR (ARABIDOPSIS THALIANA SIGNAL-RESPONSIVE), serine racemase [Arabidopsis thaliana] (TAIR:AT4G11640.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74610.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74611.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74612.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Threonine dehydratase, C-terminal; (InterPro:IPR001721); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Threonine dehydratase I; (InterPro:IPR005787) -1.84144960568835 -14.5871731853656 2.93807261554842e-07 0.00212569553734928 11.7036616596937 9.9962298098951 -1.84144960568835 0.154431076146551 AT2G46830_at 8.84687726158981 8.89584368396 8.4410582698701 8.61230926553668 8.7929103818504 8.63900600654938 11.0343121323706 10.9464436854735 10.8223101065335 10.7755765521629 9.78732612026596 9.85629889201495 10.0945150543115 10.0951905036133 9.23183852670394 10.7263369354112 10.4063888875811 9.87417858397695 10.9221800657152 0.0930768951351176 0.0901452232095899 0.100285580779612 0.0924355829166995 0.0873115547566062 0.0953289295623914 0.0875711380530044 0.0877211691933198 0.0904787911069474 0.0873014315753382 0.0855038829530511 0.0876817734697402 0.0855038829530511 0.0900615803177937 0.0907083722853324 0.0859722469535864 0.086268465483138 0.087834221213446 0.0855038829530511 2 2|0 +|/ 19255138 19255711 19255375 19252746 19255983 + gene protein_coding_gene FALSE TRUE AT2G46830.1|AT2G46830.2 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); transcription factor encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of ARABIDOPSIS. similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1) -1.07028063169126 -14.4597229747853 3.1547488021203e-07 0.0022815143336934 11.6745778236826 19.7006108006278 -1.07028063169126 0.0434818688098222 AT3G09580_at 7.63307229843207 7.78527251779125 5.91071988385082 6.08495543876081 7.35725132455923 6.90723268536692 8.2247404360773 8.31055249636904 9.28639770855893 8.41604134837697 7.62937316135614 7.68393627801742 7.29284569577578 7.37101768045684 8.19740777754558 7.89062621619534 7.26450086767239 7.37688156170824 8.70688565040284 0.169179555435093 0.174758340204222 0.195473895217381 0.196779466595914 0.182999237407027 0.188837516112529 0.169028118685173 0.182978453751118 0.189182890612129 0.170763913018595 0.17135039256516 0.173901644725749 0.169028118685173 0.178070276056225 0.169028118685173 0.174907406155986 0.186849811848686 0.172570376376212 0.174917255567095 3 3 - 2942692 2943183 2942897.727 2942509 2944083 - gene protein_coding_gene FALSE TRUE AT3G09580.1 amine oxidase family protein similar to HEMG2/MEE61 (maternal effect embryo arrest 61), oxidoreductase/ protoporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT5G14220.1); similar to putative oxidoreductase, FAD-binding [Oryza sativa (japonica cultivar-group)] (GB:BAC07074.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -1.31907709248579 -14.4483381560551 3.17495466967227e-07 0.00229580972164002 11.6719531204614 15.4724405804612 -1.31907709248579 0.0888165732970663 AT2G38010_at 7.35473511209733 7.67415583906969 4.80740279382217 5.10948173292452 5.33369140546641 5.09398902371177 7.45215737705307 7.73426986182403 7.64875338769702 7.48445842760681 7.23586463926536 8.1740635884398 6.74726378476669 7.44207562635971 7.7047871917198 7.06883469333965 6.29034273598177 7.03008974031955 7.4341847106127 0.20506061635699 0.204256432037543 0.224254825678575 0.214377739189827 0.211277869457489 0.217519298845073 0.206719236984177 0.209651571218281 0.211811203321933 0.208594161259611 0.204256432037543 0.204256432037543 0.207137185852003 0.209678208088336 0.210706310338418 0.207123696962125 0.221634366592344 0.204256432037543 0.205653428824535 2 2 + 15916258 15916915 15916654.818 15913940 15917009 + gene protein_coding_gene FALSE TRUE AT2G38010.1|AT2G38010.2 ceramidase family protein Identical to Neutral ceramidase precursor (EC 3.5.1.23) (NCDase) (N-CDase) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase) [Arabidopsis Thaliana] (GB:Q304B9;GB:Q3EBK8;GB:Q7XJQ9); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823)|similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823) -1.38924428357231 -14.4139766610349 3.23681984674698e-07 0.00234022074919807 11.6640044327472 13.6870507725776 -1.38924428357231 0.0994614231087677 AT3G21870_at 5.28912821723124 5.61318347970471 4.56781559330098 5.10105827506663 5.16680514057983 5.20940620809503 7.62698194337173 7.65310108815021 7.83074329624097 7.51190632725884 5.45726993810609 6.66500676287579 6.2753850632886 6.19652533118362 6.731662037434 7.2714576588091 6.32696636184987 5.66736320534741 7.69908920925255 0.255485499504954 0.247253344387141 0.255421540687176 0.25890810552502 0.256514318714252 0.259149802222362 0.243360381770287 0.246904525176138 0.252912398556045 0.251000666921388 0.241982833616125 0.245871592264473 0.249739212773662 0.247571259219540 0.250508724276256 0.241982833616125 0.258930929008356 0.241982833616125 0.252100116923780 3 3 - 7703944 7704720 7704391 7703873 7704836 - gene protein_coding_gene FALSE TRUE AT3G21870.1 CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase similar to CYCP3,1 (cyclin p3,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G45080.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -1.44547622195475 -14.3355538213757 3.38311048815973e-07 0.00244463563874422 11.6457110352542 12.7807020710772 -1.44547622195475 0.108329542344494 AT4G25100_at 11.8629879330831 11.9504330727010 11.1311118881557 11.1435825016195 11.1050174481880 11.1817084646165 12.7852961378684 12.9843059833402 12.5097533284049 12.6542786020662 11.2273932381746 12.0044222907478 12.0687291574543 11.6372952629941 9.43685728063295 11.6397573056278 12.2013779335354 11.8353586052090 11.8596121881683 0.0766577561029613 0.075404832816657 0.0754700628589142 0.0769270654217318 0.0754855076689146 0.0795953504102223 0.0761353766185659 0.0770784451283419 0.082796086108669 0.0766583613506933 0.0774230266116883 0.0760875861859644 0.0765615601233328 0.0779555740997201 0.0861130697572772 0.0753017383277127 0.0765631004464494 0.0783302668438094 0.0753017383277127 4 0|4 /|- 12884677 12885605 12885283 12884310 12886831 - gene protein_coding_gene FALSE TRUE AT4G25100.1|AT4G25100.2|AT4G25100.3|AT4G25100.4 FSD1 (FE SUPEROXIDE DISMUTASE 1); iron superoxide dismutase Fe-superoxide dismutase Identical to Superoxide dismutase [Fe], chloroplast precursor (EC 1.15.1.1) (SODB) [Arabidopsis Thaliana] (GB:P21276;GB:Q9FE21;GB:Q9SW16); similar to FSD2 (FE SUPEROXIDE DISMUTASE 2), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT5G51100.1); similar to Fe-superoxide dismutase (GB:AAA32791.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -1.0451082640097 -14.3040966269786 3.4438500897314e-07 0.00248783730482196 11.6383131346986 23.6918622239516 -1.0451082640097 0.0399484984608692 AT3G30775_at 5.33619034752402 5.58205080425951 3.9424237308462 3.91853294699338 5.27073642271071 5.19810432505049 6.06615449922078 6.23228884493424 6.0314764314466 3.79899750600294 3.54618747176347 4.14676166697008 3.3389559759152 3.37857769298128 4.09598541196143 4.68573384990067 3.86736354780595 3.59358499135115 4.52146564780408 0.257574861027541 0.257574861027541 0.262323853384210 0.264711911954702 0.263676300451503 0.276802630360201 0.260433154627679 0.257803209433779 0.271632615104939 0.257574861027541 0.25920193122956 0.258388042556934 0.262650661538029 0.259041690820402 0.272648160490124 0.257958867584346 0.264581726352949 0.270638603524094 0.263133245057054 3 3|0 -|/ 12451492 12452107 12451839.4 12451115 12453727 - gene protein_coding_gene FALSE TRUE AT3G30775.1 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. Identical to Proline oxidase, mitochondrial precursor (EC 1.5.99.8) (Osmotic stress-induced proline dehydrogenase) (POX) [Arabidopsis Thaliana] (GB:P92983;GB:P92945;GB:Q96281); similar to proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G38710.1); similar to proline dehydrogenase [Glycine max] (GB:AAR86686.1); contains InterPro domain Proline dehydrogenase; (InterPro:IPR002872) -1.08702890162725 -14.1310788999042 3.80043661457711e-07 0.00274391523572467 11.5969991841505 9.5011220841086 -1.08702890162725 0.0530276811070184 AT2G34300_at 4.84106252038342 5.04613380381078 3.26015586756993 3.04946823695079 3.07304498841879 3.5825521550806 6.17677118424607 6.1271930616474 6.82242045623105 6.64398048104042 6.8860866931033 7.07534473402876 5.7579946978046 6.74646411159523 6.80163587262465 6.07910806791891 4.69085594867052 6.62106355313894 6.70814552684281 0.220885267766233 0.215536481034511 0.218726381312407 0.223249817084215 0.223467338202191 0.218670967087 0.217638663973983 0.215049456199505 0.228544933727570 0.212021931314603 0.212054249644197 0.215381963596168 0.216768378997594 0.220630568081543 0.216554697203696 0.212021931314603 0.224468178307906 0.213576829515895 0.214039113093137 2 2 - 14480998 14481669 14481317.818 14480744 14484509 - gene protein_coding_gene FALSE TRUE AT2G34300.1|AT2G34300.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G51070.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G29470.2); similar to dehydration-responsive protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96619.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22395.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.34950722101385 -13.8103503116735 4.57565949443153e-07 0.00330179589118179 11.5175263661303 10.9231317428795 -1.34950722101385 0.102160758468118 AT3G46670_at 4.68706320067925 4.76639554754012 4.13197644891862 3.8927382980885 4.14376388287347 4.29430364310937 7.38419770099311 7.30143265275676 6.37316671206242 7.10635758306197 6.31651129973382 6.84933224883581 6.37850911774846 6.27242379081244 6.86757181166812 6.71506425089857 5.80697597978979 6.61758554946275 6.50175588837711 0.207758267968935 0.205864684462567 0.218821037649578 0.212059490339630 0.205041119811089 0.206827490093916 0.214774101715592 0.213283101594064 0.211852407659313 0.20768995778281 0.209083009848964 0.205763891112033 0.203569883397603 0.213383078478566 0.204907037865036 0.206834689639795 0.205838676091198 0.203569883397603 0.203569883397603 3 3 - 17203792 17204322 17204104.455 17203574 17205382 - gene protein_coding_gene FALSE TRUE AT3G46670.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46660.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.05075333947997 -13.6735759536092 4.95863113734603e-07 0.00357616477625396 11.4824493596967 11.6444456638462 -1.05075333947997 0.0527861508965054 AT1G80050_at 7.30129194850853 7.04599497887093 4.29680457638287 4.37857861838077 5.906211161731 6.28098433099255 7.13470861065374 7.13665082320146 7.06233161449423 7.75812963698257 6.97729585911101 8.403051121587 6.53422997774129 6.14769841849181 7.8902414566143 7.92724534525517 6.14936072511873 7.02374203226853 7.78735664973298 0.227559776468171 0.225307190377146 0.254392316635776 0.257944611684983 0.231231844670002 0.239975161679941 0.226373191337907 0.224791245082922 0.232988889043748 0.239901724283583 0.229286992217053 0.244343867245274 0.2261734276267 0.240042099695345 0.237399476236697 0.233927527521188 0.259785132520442 0.233443221156299 0.256723604838254 1 0|1 /|- 30116632 30117904 30117254.333 30116407 30118217 - gene protein_coding_gene FALSE TRUE AT1G80050.1 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. Identical to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT 2) (APT2) [Arabidopsis Thaliana] (GB:Q42563;GB:Q39004); similar to APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G11160.1); similar to Os04g0504000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053244.1); similar to Os02g0613900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047421.1); similar to putative adenine phosphoribosyltransferase form 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD19719.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -1.17167405090832 -13.4343228037594 5.71750541314897e-07 0.00412060615125647 11.4193112606339 13.5189268398036 -1.17167405090832 0.0797408845405297 AT4G21870_at 5.8291889062062 6.18294738732054 3.68560406556322 4.19386227336161 6.26055697193356 5.57333953872691 6.07710489571976 6.6106479139949 8.2063344406763 7.74262751767401 5.1298023965281 3.74455519391569 4.50168381500249 5.85330460496567 4.34292995467905 8.64835774972952 5.24815476642367 4.08245981472996 7.4816366108333 0.274465633652742 0.267397131796368 0.270987110437660 0.271366729191996 0.270925832893129 0.279976164200861 0.2738825656502 0.267397131796368 0.291019172994101 0.269376872776394 0.267397131796368 0.270759030217314 0.267397131796368 0.270716060263419 0.268079381771919 0.267397131796368 0.281247245661178 0.273031269355789 0.272109035296541 4 4|0 -|/ 11603770 11604237 11603956.3 11603580 11604343 - gene protein_coding_gene FALSE TRUE AT4G21870.1 26.5 kDa class P-related heat shock protein (HSP26.5-P) similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83716.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -1.93146252473923 -13.3784709566939 5.91275214496309e-07 0.00426072919566040 11.4042373435716 12.0537092741323 -1.93146252473923 0.184804833346873 AT1G75250_at 5.99944624848954 6.71811567929458 4.82760466122302 5.31888797763852 5.54012590362734 5.45450922820855 7.55073900408267 7.9443755057719 6.46629441882779 6.70126379328296 4.43842872903218 5.78174916400175 5.90152133021625 6.00681689951035 3.42362677937279 6.08836054499876 5.09933671969946 3.77501626431614 7.36154856797683 0.222383084840447 0.220934303922672 0.242624025934305 0.223198407504317 0.222644715875866 0.236033945145856 0.221580133217544 0.237857355714520 0.232748873774626 0.222327597613997 0.226296156215427 0.222362391217035 0.219623956752931 0.221938875811179 0.244373347995287 0.229889181071970 0.231769260218379 0.234994488286732 0.224901858045753 1 1 - 28248810 28249074 28248968.636 28248009 28249114 - gene protein_coding_gene FALSE TRUE AT1G75250.1|AT1G75250.2 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus (GB:2CJJ); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.77328285310219 -13.3283350287100 6.09435943569633e-07 0.00439098597341920 11.3905958396757 12.12292184967 -1.77328285310219 0.165999474622963 AT3G16660_at 9.6020008611594 9.87358921055506 6.63629353444025 6.76431791089439 8.13516354656569 7.68765029889835 8.4846068307346 8.89645891322664 8.90722305668959 7.71779120133742 6.92749843203216 7.90413704558208 7.20618798259946 7.73067081718095 8.32795099222886 6.41433984119907 7.36604938209827 7.43367887260255 8.27884684382203 0.268215518213849 0.262079463603444 0.268556561087703 0.250393369643876 0.267558715090177 0.271554537921646 0.280708843733976 0.261726256188227 0.268183871581420 0.260556706280649 0.250393369643876 0.250393369643876 0.250393369643876 0.261081039674321 0.250393369643876 0.26539066326081 0.250393369643876 0.265587985413005 0.250393369643876 3 3 + 5676929 5677103 5677024.143 5676835 5677921 + gene protein_coding_gene FALSE TRUE AT3G16660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16670.1); similar to phylloplanin [Nicotiana tabacum] (GB:ABE03627.1) -1.39789024723926 -13.2446677205826 6.41143079534876e-07 0.00461687131573064 11.3675957224015 16.1175607406293 -1.39789024723926 0.117376577993747 AT2G43820_at 8.8565869948057 9.16368128394352 7.71110631526809 7.80652556755607 9.11618804452739 8.95317410880503 6.95055923947403 6.87021473509319 8.2036174133378 7.64012294316765 3.87422003008521 3.69005433948825 4.87200513489193 5.01707485084701 5.43110629891838 6.96129011421597 6.53477254258713 5.97620854611447 7.74183130123738 0.220853462089748 0.219747396051776 0.214472321016907 0.214741030156751 0.21912237372509 0.227556797572444 0.213991008220225 0.215074593125653 0.216103237058721 0.213306582692247 0.218055534708463 0.226064589739860 0.212888231952477 0.221923759028391 0.235104891985646 0.212730233566609 0.215540503123562 0.213544080543367 0.216184537195722 2 2 + 18160193 18160711 18160331.545 18159304 18160985 + gene protein_coding_gene FALSE TRUE AT2G43820.1 GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G43840.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.06538889569701 -13.1899798818979 6.62859700227513e-07 0.00477126412223764 11.3524013205071 14.7567288868797 -1.06538889569701 0.0639226820897445 AT2G45470_at 7.40986110661013 8.03121502488739 3.26220818497912 3.23848491585202 4.20773995985814 4.51537847173425 8.11516324745913 8.44796145124454 8.03186919530525 8.28510138002297 9.98123207699634 10.3268758929010 9.21210243067927 9.43384357222761 10.3538621325747 9.14442710793312 7.39972976787266 9.188184953975 8.25425546474476 0.188985392217788 0.192699867281444 0.216042904860091 0.202774604392925 0.199034060129245 0.223165412303731 0.177913294836711 0.185018769542823 0.190433016980424 0.18278177154852 0.178304209678510 0.183568242045024 0.179187171152631 0.191475117410526 0.183822261822077 0.177913294836711 0.200554998019002 0.177971916434410 0.184401727619902 2 2 - 18749979 18750374 18750172.909 18749614 18751185 - gene protein_coding_gene FALSE TRUE AT2G45470.1 FLA8 (Arabinogalactan protein 8) Identical to Fasciclin-like arabinogalactan protein 8 precursor (AtAGP8) (FLA8) [Arabidopsis Thaliana] (GB:O22126;GB:Q56ZW9;GB:Q8L9B1;GB:Q9FR46); similar to FLA10 (fasciclin-like arabinogalactan-protein 10) [Arabidopsis thaliana] (TAIR:AT3G60900.1); similar to fasciclin-like protein FLA5 [Triticum aestivum] (GB:ABI95395.1); similar to Os04g0574200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053617.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.50273688128689 -13.1687116544972 6.71525631441197e-07 0.00483229844385086 11.3464575234520 14.6887220062877 -1.50273688128689 0.133155368332178 AT1G48570_at 6.63453805665542 6.73999853091554 6.09253730752031 5.81328280780445 4.95126679048738 4.89242222480127 7.11832671470187 6.75773429958438 4.65836427342527 5.37692389255785 3.89223129556184 3.96538491809658 3.66338611175236 3.71232248088638 4.19282760401239 4.46901106809005 4.73961964278361 4.36698290080844 5.15766146500956 0.250807905089328 0.248737072476651 0.245826482416751 0.246097534448813 0.245826482416751 0.245826482416751 0.264729708832291 0.255723151126396 0.2581199980377 0.250319995038428 0.250372178128624 0.245826482416751 0.246804082618121 0.24669588181256 0.248597861930957 0.245826482416751 0.249672449596944 0.246545824781107 0.249370440574401 1 1|0 -|/ 17959127 17960357 17959793.444 17958946 17961387 - gene protein_coding_gene FALSE TRUE AT1G48570.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G70650.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE26599.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -1.15718395436311 -13.1422198041835 6.82496968923336e-07 0.0049105656914034 11.3390265699226 10.7197819897654 -1.15718395436311 0.0816470656738313 AT3G55120_at 4.81870199595159 5.18941771129931 3.66725959281191 3.53486969794829 3.66839879358647 4.16389475364677 6.8222933135766 6.98426591938276 4.99649490250551 5.90271206869571 4.91165798827588 4.86947615873647 4.59540594045678 4.67050881919538 4.55056804353843 3.99186162841984 5.18895256374416 4.79646560622186 4.67741181478667 0.269070488523763 0.266926540732661 0.272818619222174 0.27453642667764 0.262525821740915 0.262525821740915 0.275509349439266 0.272355666444419 0.267305054002502 0.269242112825326 0.262525821740915 0.267760307140574 0.266836668105134 0.271279057696940 0.263896969396175 0.262525821740915 0.268250951083831 0.262525821740915 0.262525821740915 3 3|0 -|/ 20441326 20442121 20441762.667 20441091 20442447 - gene protein_coding_gene FALSE TRUE AT3G55120.1 TT5 (TRANSPARENT TESTA 5); chalcone isomerase Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Identical to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase) (TRANSPARENT TESTA 5 protein) (CHI) [Arabidopsis Thaliana] (GB:P41088;GB:Q8W532;GB:Q9LE13;GB:Q9LF74;GB:Q9LF75); similar to chalcone isomerase [Arabidopsis thaliana] (TAIR:AT5G66220.1); similar to Chalcone--flavonone isomerase (Chalcone isomerase) (GB:O22651); contains InterPro domain Chalcone-flavanone isomerase; (InterPro:IPR003466) -1.34520409698828 -13.0264694886867 7.32833911874593e-07 0.00527200716202583 11.3061995079856 9.80067190006024 -1.34520409698828 0.113044387361574 AT1G74560_at 7.6394733732648 7.47405076250732 7.13212511666284 7.32787722538585 6.69070065075581 6.88797672054953 8.49102543959449 8.55011649187743 5.30190467484322 6.81093343070513 4.50168675682874 4.93631466907314 5.30503357153988 4.80197921011591 5.88944164564325 4.5316326335669 6.69679329386338 4.97822627300736 6.40158780348165 0.222218198520603 0.213521627189907 0.21557391754735 0.220049963234434 0.215804556751996 0.213521627189907 0.214213386950614 0.218251023532255 0.229040488026655 0.222486697765938 0.216348420819813 0.226946988424581 0.223631052739496 0.227355781702682 0.214256866565535 0.217918973861568 0.229184057288768 0.217067392723780 0.227705976920279 1 1|0 -|/ 28021817 28022892 28022456.556 28021245 28023710 - gene protein_coding_gene FALSE TRUE AT1G74560.1|AT1G74560.2|AT1G74560.3 NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding|NRP1 (NAP1-RELATED PROTEIN 1); DNA binding|NRP1 (NAP1-RELATED PROTEIN 1) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. similar to NRP2 (NAP1-RELATED PROTEIN 2), DNA binding / chromatin binding / histone binding [Arabidopsis thaliana] (TAIR:AT1G18800.1); similar to Os02g0576700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047218.1); similar to nucleosome/chromatin assembly factor A [Zea mays] (GB:AAK67146.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.99766669238884 -12.7530108510507 8.6901460134791e-07 0.006239524837678 11.226263076671 13.2124751274322 -0.99766669238884 0.0568960807203581 AT3G03770_at 4.04927014116183 4.1454089863935 4.00475480338569 3.84753830274266 3.579714505971 3.30711045179883 7.43570165020416 7.12519794972311 4.94180839160804 7.00383289654675 5.92135173452823 6.17215518222618 5.47578272829223 5.20171912714976 5.70646254424171 6.43650974385053 5.39292861438437 5.72659612807935 5.92803295350114 0.250951095328366 0.247892218610681 0.246915038290972 0.246915038290972 0.246915038290972 0.250954035141863 0.254328169454261 0.249651474999729 0.267890185679356 0.247713551433428 0.248929303512082 0.251504632956925 0.251605965597567 0.259185919005470 0.253676200699947 0.249111318602856 0.258891569925858 0.251788580959434 0.259405324001443 3 3|0 -|/ 945460 946279 945774.5 945146 949045 - gene protein_coding_gene FALSE TRUE AT3G03770.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G14210.1); similar to putative brassinosteroid LRR receptor kinase protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07439.1); similar to transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAQ01159.1); similar to Protein kinase [Medicago truncatula] (GB:ABD28527.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -1.10390917721869 -12.7489443718736 8.71241803207673e-07 0.00625464490522789 11.2250484827995 10.5428769185373 -1.10390917721869 0.0782936525604936 AT2G30010_at 5.65263836024408 6.12417466178945 2.44226855002694 2.58791064159446 3.14204059202600 3.01023617507376 3.99087791102844 4.41733420922132 7.15720839115285 6.46090908381225 7.63613987059498 7.9411544520421 6.46957655058861 6.71668696976521 7.84489444630943 7.49112777391418 3.53075413246826 6.18219105927438 7.7732285179547 0.316367789537539 0.316367789537539 0.362952921315925 0.344057832882239 0.334160916862586 0.330435937556225 0.317891136896681 0.325959007043312 0.32409996842074 0.316367789537539 0.316367789537539 0.316367789537539 0.31668241793948 0.319386934664752 0.316367789537539 0.316367789537539 0.33904627246575 0.316367789537539 0.316367789537539 2 2 + 12814749 12816254 12815591.364 12812801 12816463 + gene protein_coding_gene FALSE TRUE AT2G30010.1 similar to PMR5 (POWDERY MILDEW RESISTANT 5) [Arabidopsis thaliana] (TAIR:AT5G58600.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); similar to Os03g0290900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049797.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.32726265166374 -12.7166615259625 8.89150294985286e-07 0.00638054251681441 11.2153786482659 10.8494422982137 -1.32726265166374 0.115155556394780 AT2G30150_at 5.48237553774139 5.98786591239016 3.74418093634739 3.92030719346257 4.33282786969205 4.05754270738519 6.97555231013552 7.55805389892016 5.44768476351625 6.9146012798031 6.03427062127353 6.3041584465179 5.9079580675439 5.91444962944651 6.30209328093239 6.45772542447378 4.98793105634005 4.95043964964417 6.9403611864149 0.217520862954888 0.214936863442537 0.215838783126903 0.214678937053131 0.21540691767614 0.220009056935635 0.228614675783533 0.227653486627748 0.217521765566762 0.218156836896418 0.215747407518188 0.21710269894771 0.215109047039249 0.216457888757693 0.219079293785635 0.215446056374368 0.219447441953806 0.220906304083774 0.217957744613898 2 2 + 12882666 12883152 12882955.455 12881783 12883199 + gene protein_coding_gene FALSE TRUE AT2G30150.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30140.1); similar to Os01g0805400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044560.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); similar to Os05g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055920.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.53204235464911 -12.6857644154955 9.06674717201704e-07 0.00650539109592222 11.2060780287974 11.4031353033924 -1.53204235464911 0.144956499280777 AT1G78570_at 9.20158903438035 9.38862873380222 8.85502900939578 8.64456922065605 7.71604417923354 7.58759609822802 9.93002989101427 10.0655416053341 8.79201274262734 9.15429192454645 8.02916824485632 8.87313335193836 8.52311964485811 8.0975851491882 7.82003821540363 8.03742450053737 8.15556213037353 8.96390797773583 8.643500170512 0.167139053297423 0.170848517243882 0.182365252074074 0.188134869467899 0.184720068821244 0.178614247606601 0.172600358874729 0.171965877780958 0.179031408500994 0.167498035554306 0.174601912904493 0.172067793625196 0.173124704132129 0.180186836857259 0.178588262538217 0.170309811520218 0.173551952783246 0.170382609781656 0.170014832029918 1 1|0 +|/ 29556416 29557038 29556711.1 29554542 29557331 + gene protein_coding_gene FALSE TRUE AT1G78570.1 RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli. Identical to Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC 1.1.1.-) (RHM1) [Arabidopsis Thaliana] (GB:Q9SYM5); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM3 (RHAMNOSE BIOSYNTHESIS 3), catalytic [Arabidopsis thaliana] (TAIR:AT3G14790.1); similar to UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase (ISS) [Ostreococcus tauri] (GB:CAL58329.1); similar to rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95280.1); similar to Os03g0278200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049724.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-glucose 4,6-dehydratase; (InterPro:IPR005888) -0.998206783310791 -12.6709550606638 9.1521046788724e-07 0.00656480468615517 11.2016041502016 17.5115088120506 -0.998206783310791 0.0584657200084131 AT4G01460_at 6.28407101795878 7.18591150954952 2.9117373398041 3.53043621391894 5.23547733340778 4.81262203363804 6.95703842857777 7.25381220635393 7.05678544861389 6.84192995182385 6.39743040128207 7.88241578881578 5.87725126286501 5.61452103847437 6.89118007847945 6.15968672028656 4.13028616531399 5.55169798586592 8.020017978397 0.233037793280101 0.233668707385727 0.24962160084609 0.237866449427939 0.230199140747491 0.235580878042269 0.230199140747491 0.235367747530316 0.247157993682158 0.234891046827324 0.233744117083102 0.23622965202657 0.230199140747491 0.236393923552344 0.232336176310746 0.230199140747491 0.246737160683458 0.237499035886972 0.230199140747491 4 4|0 +|/ 621717 622632 622147.7 620759 622943 + gene protein_coding_gene FALSE TRUE AT4G01460.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G61950.1); similar to Os10g0376900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064473.1); similar to helix-loop-helix DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19748.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -2.02041291992824 -12.6663211196234 9.17899709334297e-07 0.00658225881563624 11.2002021113503 12.2060398302933 -2.02041291992824 0.209316454883625 AT1G23140_at 7.36497127746583 7.48841724098084 5.598382740432 5.9643714867114 6.17959297655704 5.68492999063379 6.2263540966779 5.79637616252728 5.91025665044344 5.64312999992233 3.42668708319267 3.53757912830115 4.07133484915240 3.76646344113371 2.72433413680201 3.60373931911055 3.97158113051382 3.59603590518884 5.19641762742159 0.242003674533235 0.256862047959810 0.243680018274327 0.258427886828409 0.247178328833155 0.254365332696318 0.246907014762757 0.248870088526177 0.261242862496366 0.25717262852177 0.244728273267757 0.245491494659198 0.249045526634401 0.250653544423539 0.253182104589083 0.244042466149060 0.255315430946839 0.242003674533235 0.245953536799082 1 1 - 8202360 8203132 8202758.364 8202250 8203204 - gene protein_coding_gene FALSE TRUE AT1G23140.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70810.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -1.4291295571254 -12.6157647247144 9.47818105560466e-07 0.00679396018065742 11.1848394635455 10.8731682298834 -1.4291295571254 0.131653450953493 AT3G12610_at 7.22692068465374 7.8234753550959 3.54176765664347 3.60534481092580 6.24498455298851 6.25491240179004 7.89279037882412 8.08688980236647 7.58972549139599 7.54463525224499 8.77901404617336 8.91113561015958 8.24976665423373 8.12777742628307 9.157847464723 7.8890234714161 6.11807303770552 7.95516752251121 8.42141275375608 0.197707637435093 0.198421390832853 0.227603032986361 0.213066269240046 0.206981584479455 0.216053986607546 0.197707637435093 0.207945504186052 0.223154851750595 0.204149873513528 0.198531465481634 0.200622708904147 0.197707637435093 0.197943954418979 0.213229081133203 0.206464348690611 0.215735918071898 0.203188270657507 0.200178269354747 3 3 - 4006715 4007231 4006966.727 4006406 4007814 - gene protein_coding_gene FALSE TRUE AT3G12610.1 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;GB:Q9LHK0); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G20820.1); similar to leucine rich repeat protein [Cicer arietinum] (GB:CAE76632.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.27460777231488 -12.5895321852636 9.63768790599124e-07 0.00690733092222392 11.1768199779738 14.3348357820525 -1.27460777231488 0.109133254202961 AT2G25840_at 6.39517151666467 6.22263091680984 5.34044193643078 5.27231376051137 5.56816503463616 5.33267585634617 7.0255769931099 6.79661696055315 6.78008510564783 6.82983531172662 5.81888330117218 6.65622820246188 5.68349535746601 5.91648958740935 6.99796599744402 6.0709484947968 5.45404565758359 5.90562504413671 6.94518494871837 0.210436818452846 0.225577906188800 0.210436818452846 0.212398192025485 0.211729199843029 0.221926595414375 0.211341159488845 0.224144037473302 0.233339611421526 0.212850371488709 0.219227579302117 0.218616942824104 0.212863354503610 0.217374231253718 0.225389756701254 0.210436818452846 0.226872682686415 0.2178650628105 0.210436818452846 2 2|0 +|/ 11030886 11032167 11031531 11028955 11032448 + gene protein_coding_gene FALSE TRUE AT2G25840.1|AT2G25840.2|AT2G25840.3 OVA4 (OVULE ABORTION 4); ATP binding / aminoacyl-tRNA ligase similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305)|similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -1.01017076659603 -12.4271594490525 1.06940702419045e-06 0.00766123192130035 11.1264380278635 12.4515301188860 -1.01017076659603 0.0652784480680254 AT1G35190_at 7.30984124183596 7.4852438677929 6.09344979118358 6.21384696113135 7.34936175167866 7.2529629870495 6.96960240334258 6.75987061586387 5.78369648967292 6.59497942878951 4.20455678998424 4.32494113898001 5.43413500660741 5.47195918354519 3.95295249555844 4.42262948684305 5.20922506234053 5.15726925913672 6.47204722416747 0.230322904550319 0.231916076360252 0.234368164224285 0.237752594363659 0.231255878622291 0.243370922419850 0.230322904550319 0.233455944621875 0.232717773899036 0.231163520340721 0.234393580533504 0.231751010795746 0.239770073462892 0.242420024870315 0.240205493507011 0.232841536233902 0.244046143563416 0.230322904550319 0.230558886399985 1 1|0 +|/ 12891420 12892578 12892153.889 12890401 12892852 + gene protein_coding_gene FALSE TRUE AT1G35190.1|AT1G35190.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G46480.1); similar to Os01g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042255.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81241.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.95754999372512 -12.3787511910194 1.10335000833033e-06 0.00790108940965349 11.1111662196725 12.4571639193603 -0.95754999372512 0.0543242003744536 AT2G21540_at 4.33071925880467 4.14462473139487 2.7305167523493 2.7512046562772 2.94595150887718 2.7727169176256 5.9866927745001 6.16168622238422 6.72407033630425 6.04588807069997 8.33395943727976 7.6141588377546 5.72234610414447 7.43701817431421 7.1203983511452 5.36565574679054 4.76654632225013 7.74308889417661 6.15116931431213 0.211859914654648 0.214295251910722 0.221611751869105 0.231198834650676 0.216693206362032 0.225004510282813 0.220461576929885 0.220672020083948 0.227100594831979 0.215891244547002 0.214530016135279 0.214953931646453 0.219050123789234 0.213639414272588 0.220382836651440 0.211859914654648 0.216082723808999 0.215676486725809 0.214116142618999 2 2 - 9228068 9228857 9228513.545 9227629 9231576 - gene protein_coding_gene FALSE TRUE AT2G21540.1|AT2G21540.2 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative|phosphatidylinositol transporter similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G36490.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to SEC14 (secretion 14) [Arabidopsis thaliana] (TAIR:AT4G39180.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85401.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.949989689139414 -12.3229356087696 1.14398385633432e-06 0.00818863644364105 11.0934117844206 10.5129836314037 -0.949989689139414 0.0535329695057732 AT2G30420_at 5.31190330831412 6.03127143466467 2.99330992207578 2.98011574854536 3.83581494823430 3.78968226263967 5.96071594044243 6.05856132377919 5.24514868801816 5.69919838887216 5.48668104672357 6.01629412072077 6.21505649816747 6.01373840621005 4.73742777681669 5.65230348346594 4.35242094803886 4.48603130856828 5.94019123622636 0.304100000527957 0.295093057106842 0.296442642600576 0.301283694703042 0.29222120331302 0.309003496211649 0.29222120331302 0.29222120331302 0.310742004558349 0.297468521973754 0.293921986990112 0.29222120331302 0.298318513174739 0.29222120331302 0.29222120331302 0.302952402328723 0.306424143491833 0.30347612064476 0.299225522698995 2 2 - 12968060 12968968 12968589.75 12967961 12969239 - gene protein_coding_gene FALSE TRUE AT2G30420.1 myb family transcription factor similar to TRY (TRIPTYCHON), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G53200.1); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G30432.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.34953376027147 -12.2542202629047 1.19631409058468e-06 0.00855723468995225 11.0713372661099 10.1192586792342 -1.34953376027147 0.125910383848375 AT1G04710_at 6.97306321167143 6.74737411870772 5.84711816282388 5.7902390946708 6.22813634327963 6.10472360033427 7.64462437523436 7.56134397939244 6.27939295845303 7.24330806260906 5.11985622860311 6.24189577016035 6.24515733436526 6.1269874306746 6.3302697288345 6.18805420217753 6.13658118634794 6.18246207364397 6.49054930572403 0.197700128620168 0.196226934108154 0.200678217803686 0.206365876243757 0.195066065102155 0.206125423030567 0.205391415659068 0.194977512492331 0.205384510847069 0.196723897118949 0.203006231266259 0.204541549937478 0.196002651123064 0.199812221657846 0.204405919965922 0.194968823137115 0.200900547754143 0.201123872795170 0.198449912073398 1 1|0 +|/ 1323558 1324529 1324050.3 1321903 1324779 + gene protein_coding_gene FALSE TRUE AT1G04710.1 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative Identical to 3-ketoacyl-CoA thiolase 1, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 1) (Acetyl-CoA acyltransferase 1) (Peroxisomal 3-oxoacyl- CoA thiolase 1) (KAT1) [Arabidopsis Thaliana] (GB:Q8LF48;GB:O23014;GB:Q8LPI4); similar to KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT5G48880.3); similar to PED1 (PEROXISOME DEFECTIVE 1), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT2G33150.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase; (InterPro:IPR002155) -0.91936128444274 -12.2126344044604 1.22927530074504e-06 0.00878808912502632 11.0578605492058 12.9833235790708 -0.91936128444274 0.0478135738466197 AT1G01390_at 6.3520864491554 6.46735683951863 5.88587777155499 6.17467367335289 5.83943443460419 5.86993095172399 8.60594904867064 8.53986183973154 4.00554774509698 4.752183681792 3.32134992609302 3.59239894358682 4.6506213521887 4.14980137093985 2.60579694284819 4.8340848778162 5.45913664192204 3.43791909972735 4.30120614609843 0.251718259449730 0.251877619131163 0.254873712541494 0.245399678470701 0.253239741420376 0.264041224869013 0.267883881982218 0.263384944278783 0.25893834341619 0.256892567239591 0.253886049543885 0.254576257282084 0.253548984703136 0.246973610373526 0.257639340375516 0.248333703606106 0.253651501048185 0.246236582604008 0.261426866243792 1 1 - 148322 148878 148638.273 148120 149806 - gene protein_coding_gene FALSE TRUE AT1G01390.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G01070.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.947712441532786 -12.2015665249697 1.23821722288782e-06 0.00885077670920214 11.0542587499666 10.8965802937321 -0.947712441532786 0.0552659470790468 AT3G06770_at 4.58957012217591 5.21398314243638 3.32721190835525 2.81414500387417 3.39064078941312 3.56209663011845 6.91241128511308 6.98865388803737 7.70203593248025 7.2821118935509 8.6313172666123 8.2878178218012 7.41447717776302 8.05582238834536 8.63441137385202 6.732932023541 5.17281342790168 7.13279169264275 8.34859525135073 0.266900145689675 0.260373839268389 0.271960895329906 0.276683037590642 0.271264325447474 0.268915040667519 0.262259477815128 0.263031482399701 0.268040140127494 0.26078528162744 0.268609509006864 0.260286069235399 0.268443621237364 0.263157208756322 0.271079956402808 0.265577139905746 0.276736058996839 0.261834576328249 0.260225325018322 3 3 - 2135172 2135692 2135427.818 2134806 2137234 - gene protein_coding_gene FALSE TRUE AT3G06770.1|AT3G06770.2|AT3G06770.3 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Arabidopsis thaliana] (TAIR:AT5G49215.2); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334)|similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G49215.1); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.46120707786849 -12.1786317407502 1.25697799164017e-06 0.0089836217062523 11.0467749103016 12.2425285573662 -1.46120707786849 0.143576907053620 AT4G02790_at 7.87289871409235 8.0796060454308 6.89820100576038 6.6330963065436 7.10438117863222 7.30328181654481 8.43901059155822 8.18935307881018 8.20105637901508 8.15725778122234 6.54028435034714 7.43721251923892 6.78994801393296 6.80756993845925 8.02368967216629 7.80993039568817 7.34362767948789 6.30848234194474 7.90830376996738 0.155085702844877 0.155284960790435 0.166783975401788 0.1565464665336 0.161765581044978 0.157670183659104 0.158306153276742 0.159510477674623 0.160700490813936 0.163586667085912 0.166151222415402 0.15258346476508 0.168153390688251 0.157550442021035 0.154029912352881 0.153269899815004 0.155635155942930 0.160463298158079 0.158405583674667 4 0|4 /|+ 1248620 1249325 1248950.3 1247386 1249588 + gene protein_coding_gene FALSE TRUE AT4G02790.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G41670.1); similar to Os05g0430400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055624.1); similar to COG1161: Predicted GTPases [Nostoc punctiforme PCC 73102] (GB:ZP_00109854.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) -1.05837828004803 -12.1060753304891 1.31844497706562e-06 0.00942028936113386 11.0229182312188 15.1757114708265 -1.05837828004803 0.0802232519319905 AT1G22650_at 6.09279866132694 5.81159743021751 5.73539100770232 5.68330719106158 4.45893033735645 4.55623269574119 6.25400955162434 6.3111346586819 5.41721718716947 4.7003661687935 4.12889200034686 4.87198601494595 3.61402265554002 4.28159338374496 3.99707486259181 3.90956754627329 4.16240890463147 5.07594348451026 5.19455936262093 0.208093184352808 0.204855768249694 0.208779550604867 0.202759730060388 0.205603060445841 0.210403352653988 0.202759730060388 0.204641523017702 0.208248890784691 0.210308653634888 0.205579346975246 0.203578106022426 0.211266726205727 0.208419344805381 0.217087305415031 0.237752157935882 0.206790151326777 0.205288051575098 0.202759730060388 1 1|0 -|/ 8013722 8014386 8014180.3 8013371 8015980 - gene protein_coding_gene FALSE TRUE AT1G22650.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G72000.1); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.928890616892753 -12.0662584041169 1.35359313549318e-06 0.00967006935996327 11.0097085685726 10.2925420314312 -0.928890616892753 0.0532035119864614 AT1G68440_at 6.24769179339197 6.41688675226708 6.70481308831577 6.62419279695808 5.87472741568178 5.52756206788785 7.74707969326212 7.88058095736179 7.39003573283476 7.29647088544636 6.64711863149465 6.13401781750334 6.47934469826718 6.77719832508447 5.33579781100225 6.53272340895115 5.92443177210495 5.7658294586532 7.19457577597577 0.178008584922597 0.178008584922597 0.184427674725059 0.187284341116276 0.189612398676517 0.182371287517122 0.187788474940457 0.18136894040657 0.205553622913092 0.178167564248331 0.178008584922597 0.182566809460026 0.182531713120861 0.184714090744494 0.210617566567607 0.183144860714432 0.191211687309497 0.191020117474189 0.187386306215749 1 1 + 25662162 25662667 25662436.727 25661696 25662936 + gene protein_coding_gene FALSE TRUE AT1G68440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25400.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93249.1) -0.99218617394809 -11.8147754466143 1.60121631304771e-06 0.0114310832588476 10.9243028429841 13.3745677565416 -0.99218617394809 0.072077409101926 AT1G72970_at 3.91864138506623 4.41320797550834 2.11483346133123 1.97439830719847 2.48316821018221 2.55790032252929 6.40102864724889 6.92931212551502 6.50489922286398 6.40348620779088 7.93495112846258 8.81684699574064 6.51206970708973 7.11160618201283 8.16891298762429 6.89559324355166 4.23104063303482 6.52111437787642 6.6473409140045 0.278857368568287 0.274754622140408 0.308083003399176 0.295149961578171 0.275713067789586 0.287034568767242 0.272103660850362 0.278468802391047 0.275237208888349 0.275218695256298 0.273246261161723 0.272103660850362 0.272103660850362 0.276172051799998 0.272103660850362 0.272103660850362 0.276393151840761 0.278087561604210 0.277275099359586 1 1 + 27458766 27459191 27458990.091 27456427 27459625 + gene protein_coding_gene FALSE TRUE AT1G72970.1 HTH (HOTHEAD); aldehyde-lyase Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. Identical to Protein HOTHEAD precursor (Protein ADHESION OF CALYX EDGES) (HTH) [Arabidopsis Thaliana] (GB:Q9S746;GB:Q9SXZ3); similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12570.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os09g0363900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062996.1); similar to putative mandelonitrile lyase [Oryza sativa] (GB:AAF65820.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) -1.31376549965999 -11.7941502977023 1.62366222331267e-06 0.0115897009500059 10.9171441241622 10.6203574818944 -1.31376549965999 0.128222466683990 AT4G23940_at 5.40257698030954 5.23557259602673 3.96583966129467 3.64520011696028 4.24277849289189 4.25108429234571 6.71169331140585 6.23908812382674 4.96871672065315 5.76060954562921 4.30579926991075 5.77760682370127 4.42911987468863 4.64362002001259 5.69333780541285 5.83210314256352 5.03929166328289 5.0735869145041 5.82789219438455 0.227310956732259 0.215018533955311 0.228822977352463 0.224354538259268 0.216549822551456 0.225663608493182 0.216951283609882 0.219237281658686 0.220167544219600 0.227259410580393 0.217092633913974 0.215018533955311 0.215018533955311 0.227102212824133 0.220345734642401 0.215420305807498 0.215721511606301 0.215466965336997 0.219827968214109 4 4 + 12441192 12441821 12441546.818 12437118 12441978 + gene protein_coding_gene FALSE TRUE AT4G23940.1 FtsH protease, putative similar to VAR2 (VARIEGATED 2), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G30950.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL55821.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -1.14538587149090 -11.6725103458970 1.76337664181445e-06 0.0125764022094207 10.8744368043296 10.2709197016236 -1.14538587149090 0.102982041833137 AT3G46900_at 6.07891363296678 6.12043790048988 4.39394565137194 4.24756068287915 5.28656004298913 5.20149546350619 5.97323643816547 6.32679295991309 4.81329941095385 5.39065451669313 3.32443863655198 3.73377582263525 5.43705219550506 4.27650964410786 2.79921185175047 6.33881730255004 6.02202875095533 3.49916490758436 4.82634914993177 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.295154416394659 0.292801574898091 0.292801574898091 0.294350293967314 0.297415971125811 0.297583418729056 0.297727509620446 0.292801574898091 0.292801574898091 0.313157334730617 0.299317248527072 0.292808576160658 0.309699792489974 0.293623263604166 3 3 + 17279999 17280292 17280156.273 17279860 17280495 + gene protein_coding_gene FALSE TRUE AT3G46900.1 COPT2 (Copper transporter 2); copper ion transporter encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast similar to copper transporter, putative [Arabidopsis thaliana] (TAIR:AT2G26975.1); similar to putative copper transporter protein [Oryza sativa (japonica cultivar-group)] (GB:BAB56072.1); contains InterPro domain Ctr copper transporter; (InterPro:IPR007274) -0.96184045480087 -11.6687594509434 1.76789248188138e-06 0.0126068412882961 10.8731065006015 10.1731058039425 -0.96184045480087 0.0682175734989552 AT2G04030_at 7.79199870386452 7.80066875953718 7.56962958780232 7.27571887163819 7.01747979018949 6.45218297055431 8.60616710814667 8.40083364002675 7.86437846502581 8.49619715424055 6.36451207281658 6.64662823593848 7.00981451798831 6.29223192731603 7.48916300672063 7.41485439515238 7.76348721119589 6.5955001280296 8.55279529890308 0.175352018155507 0.182528050072235 0.179485260582136 0.180997464210994 0.178738729493558 0.179439232234789 0.185302400564898 0.178343237139807 0.181407459366984 0.183751198408317 0.185272408352904 0.175609411050023 0.187743779224082 0.182440473123143 0.187991453330919 0.188309275988013 0.186166886058378 0.183976112654238 0.178380928150382 2 2|0 +|/ 1285130 1285878 1285436 1281838 1286101 + gene protein_coding_gene FALSE TRUE AT2G04030.1|AT2G04030.2 CR88 (EMBRYO DEFECTIVE 1956); ATP binding Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. similar to ATP binding [Arabidopsis thaliana] (TAIR:AT3G07770.1); similar to heat shock protein 90C [Chlamydomonas reinhardtii] (GB:AAU10511.1); similar to heat-shock protein [Secale cereale] (GB:CAA82945.1); similar to Hsp90 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22030.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -1.21429864183806 -11.5935390637562 1.86122488200743e-06 0.013268672183831 10.8462574533113 15.2400753837789 -1.21429864183806 0.115853732913922 AT1G03870_at 6.00841684718571 6.36950198794542 4.10670032022447 4.70738092586233 5.06039576202304 5.30814156234905 7.23170508634415 7.56816184626922 9.43315991445768 8.32886431190072 9.70358517518997 8.02210240229435 8.71947284986216 9.04683063765363 8.67770975984959 7.9934760504079 6.16728612025233 8.29966860507386 9.45568837651017 0.248414523201624 0.240381973371032 0.254357679202698 0.243611013019253 0.243645806253013 0.251829432444283 0.235930546261572 0.240268596648698 0.249169766699698 0.235214126616907 0.235214126616907 0.235214126616907 0.239377466418571 0.235214126616907 0.238727186342264 0.239755655476848 0.241970407843482 0.245164811106185 0.235547024211341 1 1 - 982693 983186 982915.273 982508 983539 - gene protein_coding_gene FALSE TRUE AT1G03870.1 FLA9 (FLA9) fasciclin-like arabinogalactan-protein 9 (Fla9) Identical to Fasciclin-like arabinogalactan protein 9 precursor (FLA9) [Arabidopsis Thaliana] (GB:Q9ZWA8;GB:Q8H794); similar to fasciclin-like arabinogalactan-protein, putative [Arabidopsis thaliana] (TAIR:AT5G44130.1); similar to unknown [Brassica rapa] (GB:ABK78690.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.37129810843564 -11.5591744248955 1.90567784242634e-06 0.0135779546272877 10.8338820957323 14.4957192011233 -1.37129810843564 0.141204631542089 AT1G04770_at 8.146761926629 8.45329312528331 8.13476721322337 8.17884940523555 8.30298534806654 7.96026610369102 8.93332791864354 8.75789618743029 7.37405207921258 8.60734900277926 6.76893139635182 5.38172028218376 6.35558495450955 6.82133156361433 4.78931287745528 6.1316627048363 6.67818774184171 5.66679842260927 7.15116409546494 0.215352751024624 0.220207079072511 0.215267835049899 0.219657418465272 0.219079419059481 0.226477459800781 0.22434404982099 0.217827149788969 0.227667259276754 0.216109732655332 0.215453470048853 0.235777318846032 0.228745297785264 0.227774821550606 0.240668860941922 0.218226198286395 0.215418170132239 0.237970428198415 0.218096833959807 1 1|0 -|/ 1336656 1337108 1336839.3 1336370 1337848 - gene protein_coding_gene FALSE TRUE AT1G04770.1 male sterility MS5 family protein similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G48850.1); similar to Os05g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055980.1); similar to unknown [Oryza sativa] (GB:AAC72543.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.03263329408471 -11.5019929631358 1.98228753748474e-06 0.0141198341295038 10.8131364066824 15.2510415545641 -1.03263329408471 0.0855067608819189 AT3G12920_at 8.84092388735854 9.0701403229609 7.93257564402433 7.65267907881297 7.7299141763047 7.6634861105766 9.24423960338918 9.43136736666355 9.46950805454818 9.50274336501077 9.52114728797843 9.61245508011501 9.00086752355171 9.13097485771755 9.37767183901262 9.41083876548648 8.18429734408868 8.3933512179649 9.79256889871006 0.155020379290731 0.148773678162742 0.156899431186491 0.156400874280993 0.158628517052625 0.150289991640081 0.142942154550869 0.145792039121570 0.14774923093768 0.14663655180356 0.142942154550869 0.142942154550869 0.143719767786999 0.144328287150227 0.143312560464757 0.142942154550869 0.161095395997907 0.153214315689513 0.146244385091021 3 3 - 4122135 4122491 4122322.182 4121890 4123515 - gene protein_coding_gene FALSE TRUE AT3G12920.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G79110.2); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE88778.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.955663496298485 -11.4164206497500 2.10341494559487e-06 0.0149742109976899 10.7817279419942 17.7792777382176 -0.955663496298485 0.0714176594026055 AT3G17170_at 7.09899800448995 7.15383570729317 6.29047206612116 6.13147848101054 6.93518495038051 6.46437457601787 7.08967914683673 7.01324040786658 7.04561342778613 7.33704233119606 4.78325645337687 6.19649407878939 5.43490263837799 5.05924905867923 6.78951439074403 6.03340598032235 6.08370769695768 5.67346859017734 7.19066903316765 0.213353934921949 0.206874934213316 0.210010663885716 0.215498512480054 0.208369960546468 0.216812570469367 0.212162767664661 0.222561869224444 0.210315916739035 0.210536736154121 0.219525689751919 0.209553909449201 0.207120417444601 0.209785973668395 0.21439286563921 0.205370907374942 0.211417100229708 0.21410854295662 0.212487674739668 3 0|3 /|- 5853311 5853866 5853555.5 5853065 5854912 - gene protein_coding_gene FALSE TRUE AT3G17170.1 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03710.1); similar to ribosomal protein S6 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98957.2); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529) -1.03395960068046 -11.3998261559693 2.12784512305189e-06 0.0151417458956373 10.7755862780060 13.2460869799911 -1.03395960068046 0.0875238266152696 AT3G52750_at 8.35208949722655 8.45263317724849 7.21906501402086 6.99737901438797 7.4085065755014 7.31936640213401 9.15140329363985 9.13944014872611 8.85940363233663 9.3539866966908 8.95918100675743 9.34859145591987 8.67331158473373 8.73419287526882 9.20197591782321 9.18287449365139 8.06418128490142 9.21703094890107 9.03036389724361 0.138565997469748 0.144522158910845 0.157505928478365 0.170368563622796 0.160647075094916 0.146042979408238 0.138511535666408 0.147911330603934 0.154455858450916 0.142961528668691 0.139447885194246 0.13751676922435 0.140641453759106 0.14220898366948 0.144722520342342 0.13751676922435 0.163915996598049 0.144498504191358 0.142565328160001 3 3|0 -|/ 19560863 19562189 19561379.333 19560639 19563992 - gene protein_coding_gene FALSE TRUE AT3G52750.1 FTSZ2-2 (FtsZ2-2); structural molecule Nuclear gene that encodes a plastidial division protein (FtsZ2-2). similar to FTSZ2-1 (FtsZ homolog 2-1), structural molecule [Arabidopsis thaliana] (TAIR:AT2G36250.2); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE77845.1); similar to FtsZ-like protein [Nicotiana tabacum] (GB:CAC44257.1); similar to chloroplast FtsZ-like protein [Nicotiana tabacum] (GB:CAB89288.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.848198120230793 -11.3970458126284 2.13196909083778e-06 0.0151689600813108 10.7745556402839 17.0069448177365 -0.848198120230793 0.0449085359761614 AT3G19450_at 8.5443390661404 8.8530338358097 8.0289422295743 8.16049339828148 7.74033187983999 7.60697685200685 9.729974679051 9.6958167544146 9.19244501061383 9.50994949707326 8.50267496033538 9.26538433289185 8.77174211413147 9.33303966725477 8.78540547088851 9.1143200343827 8.51220194125762 8.69842067765824 9.42729685358702 0.176975740758154 0.158815965573111 0.169720179548433 0.173972460196597 0.162781617062763 0.171232788071868 0.164992617101406 0.163919309842619 0.177925257082366 0.160012055806354 0.162497411979037 0.157317141183918 0.167256330366866 0.156449071998121 0.164831432273410 0.156655010507473 0.165775606499801 0.165813759212245 0.159274976875912 3 3|0 +|/ 6746327 6746981 6746593.6 6744604 6747220 + gene protein_coding_gene FALSE TRUE AT3G19450.1 CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. Identical to Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) (CAD) [Arabidopsis Thaliana] (GB:P48523); similar to CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34230.1); similar to cinnamyl alcohol dehydrogenase [Ocimum basilicum] (GB:AAX83108.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.912635065584791 -11.3597253026819 2.18819425231065e-06 0.0155624375224334 10.7606760758941 17.6697198053605 -0.912635065584791 0.0627662605061266 AT1G16350_at 6.42590491381645 6.50151419294823 5.08541527122434 5.3782857956839 5.11114934774608 5.69670295569551 6.90068854731032 7.29612272653837 5.19832923806846 6.9654836629358 4.67812510342419 5.75151261806892 5.10903056627318 4.65366913808836 5.81099153215299 5.67021225826157 5.0735436380753 5.09332105963892 6.90664845856691 0.234985238501568 0.233806348522073 0.240646633885758 0.243224122566148 0.232482314836222 0.235740677058133 0.229926497572028 0.233747796295674 0.244759463713209 0.229445797783519 0.233465114164 0.232966386729822 0.229146638764067 0.236503661144987 0.238877507467259 0.230659797374723 0.242700738628605 0.235219084630575 0.232573278447511 1 1|0 +|/ 5592005 5592825 5592341.625 5590945 5593001 + gene protein_coding_gene FALSE TRUE AT1G16350.1 inosine-5'-monophosphate dehydrogenase, putative Identical to Probable inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD) [Arabidopsis Thaliana] (GB:Q9SA34); similar to inosine-5'-monophosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79470.1); similar to inosine monophosphate dehydrogenase [Glycine max] (GB:CAB38030.1); similar to inosine monophosphate dehydrogenase [Vigna unguiculata] (GB:AAO40253.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain IMP dehydrogenase; (InterPro:IPR005990); contains InterPro domain IMP dehydrogenase/GMP reductase; (InterPro:IPR001093) -1.29496948325417 -11.3561543572341 2.19365992218150e-06 0.0155969220467105 10.7593435997700 11.8429085650896 -1.29496948325417 0.133008144510308 AT4G31120_at 5.65383096087467 5.87338938686315 5.28743979461332 5.41618019708002 5.15312890825125 5.10427867354194 6.04513693625298 6.3735569047679 5.34557090776217 5.10451481669091 3.80327675461721 4.06504368307628 4.14974822552291 3.91908759048735 4.08002928560111 4.81659983321788 4.43153800391686 4.04522280502431 5.52807866421147 0.222098680654608 0.209243338624001 0.220402840724255 0.217830878370609 0.208103140804031 0.208271536026525 0.219246084914844 0.209599047739893 0.235307904580305 0.209985926691882 0.225595217019267 0.213356494599743 0.219659231610629 0.208526401864609 0.209497715758438 0.207449566513594 0.217316688964319 0.219893103698347 0.208655688912463 4 0|4 /|- 15132204 15132802 15132494.125 15132017 15136643 - gene protein_coding_gene FALSE TRUE AT4G31120.1|AT4G31120.2 Skb1 methyltransferase family protein similar to Os02g0139200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045843.1); similar to SAM (and some other nucleotide) binding motif; Skb1 methyltransferase [Medicago truncatula] (GB:ABE80388.1); contains InterPro domain Skb1 methyltransferase; (InterPro:IPR007857) -0.954229088678284 -11.3449868623257 2.21085105898418e-06 0.0157169401783185 10.7551715024604 10.3583042547329 -0.954229088678284 0.0723993405062421 AT1G75180_at 8.34179443084185 8.38692392698438 7.48208063432205 7.2634493023823 7.94868173818075 7.7703900358366 9.06421498313652 8.9402111010091 8.76503051580055 8.47996079245909 8.20008727188261 7.98243679943475 8.23691868105032 7.86335080227005 7.98820778350562 8.20618858174313 7.98981466195453 7.84913574612528 8.90127505706013 0.169703829183514 0.166440329943425 0.171216036171219 0.176068070556373 0.179956734946973 0.172439871532949 0.177651218808606 0.174727859901855 0.175665340579474 0.165864913260288 0.166177982032358 0.165346386888119 0.165991809662860 0.173427957917492 0.170304034372750 0.164546497769669 0.17285039335434 0.170515191033526 0.169591990078529 1 1 - 28219838 28221080 28220687.091 28219497 28222462 - gene protein_coding_gene FALSE TRUE AT1G75180.1|AT1G75180.2|AT1G75180.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65010.1); similar to Os03g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051432.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82722.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996) -0.871520131795005 -11.2873392059561 2.30201044855807e-06 0.0163557842370051 10.7335132850518 16.5271881004712 -0.871520131795005 0.0538979089755983 AT1G17050_at 7.22229887688393 7.77218599281886 7.16849711024451 7.38255062506096 6.7593559978174 6.68312944823211 9.58876468554214 9.87651072187641 8.60592245724873 9.29630804694916 8.07517143014713 8.45028097502144 8.3845274648754 8.29520893851327 7.65509672984145 9.26590713495453 8.08700256650767 8.20148543722306 9.18656457999366 0.22450405086992 0.210379504845380 0.221643526123624 0.220749198154477 0.224135319738464 0.225135515968502 0.210379504845380 0.219488368622302 0.238976428556057 0.218621629206564 0.219662082938308 0.215953396488321 0.217674764986191 0.222882244631095 0.217411674014066 0.218560489721360 0.236219365518072 0.211544616439978 0.214084536009235 1 1 + 5830821 5831152 5830963.909 5829092 5831326 + gene protein_coding_gene FALSE TRUE AT1G17050.1 SPS2 (Solanesyl diphosphate synthase 2); dimethylallyltranstransferase similar to solanesyl diphosphate synthase (SPS) [Arabidopsis thaliana] (TAIR:AT1G78510.1); similar to solanesyl diphosphate synthase [Hevea brasiliensis] (GB:ABD92707.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -1.17216002535164 -11.2749209216639 2.32219033140212e-06 0.0164968401142807 10.7288209575440 16.4723784053259 -1.17216002535164 0.114373687165612 AT2G05790_at 7.84228165329684 8.42746021732841 4.00044174510823 4.18875500072261 6.65714781444775 6.63394189774363 7.80136514710741 8.10768390052938 8.41212579944022 8.14334546942045 9.33832601817743 9.30580780797723 8.69372692436562 8.89656689658178 9.2880934073244 8.49901501083725 7.08111248553387 8.70837351615892 8.70581790254653 0.195333223403207 0.197186751412743 0.237689791593133 0.259450682427931 0.209905631946883 0.202039692085191 0.206641595572140 0.196202862369066 0.210877842580478 0.197580178479637 0.199775739266359 0.201802410814207 0.199366513881131 0.20948071567752 0.196219239104569 0.195861976455975 0.212826619244895 0.195648131788039 0.194173742533923 2 2 + 2200391 2200889 2200646 2199216 2201481 + gene protein_coding_gene FALSE TRUE AT2G05790.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.18433904024640 -11.1345230396066 2.56455629670298e-06 0.0181929623688110 10.6751013703726 15.2807884131215 -1.18433904024640 0.118925895651139 AT4G18570_at 6.39834741868726 6.50993766913069 4.76026042985551 5.00393679108214 5.99102916634564 5.95425537993743 7.87520605774272 7.70196112568313 7.74031735638947 7.2634528163987 8.18764371349827 8.10770987901918 7.91067532274235 7.64116548305427 7.52767687661721 7.3793485843201 6.88835958695704 7.53529528242597 7.9985363522039 0.231706852152679 0.232307066083931 0.23975561629108 0.247080679912156 0.235443113018645 0.246417998566774 0.237098286871881 0.237728146841415 0.243522952212699 0.233375543472052 0.228160315917644 0.233485036590943 0.230994834039259 0.232478546583015 0.231707274132593 0.231682157961051 0.25772271529299 0.232977852229144 0.232510843198816 4 4|0 +|/ 10233091 10234289 10233529.5 10231229 10234704 + gene protein_coding_gene FALSE TRUE AT4G18570.1 proline-rich family protein similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to pherophorin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68701.1); similar to Os05g0573900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056385.1); contains domain TPR-like (SSF48452); contains domain FORMIN-LIKE 1 (PTHR23213:SF27); contains domain FORMIN-RELATED (PTHR23213) -0.857096896628583 -11.0191801800435 2.78480297893025e-06 0.0197358987116787 10.6300320903364 13.9317016795131 -0.857096896628583 0.0555924931925767 AT4G12390_at 6.96827730697238 7.41962982867782 5.52738391062655 5.76358712149604 5.20386285063069 6.11788224501433 7.98521285471395 8.55306932459363 7.98965514439174 8.5593774488435 6.86247006050363 7.03572841427103 7.27069462320546 6.91889687500197 6.98325470798024 7.4402595522851 6.89090241386169 6.15303459260582 8.4278655360168 0.211585798563333 0.209950447722322 0.216165602720005 0.207690587492295 0.215002225995917 0.206589786761549 0.217779841890630 0.214873554680625 0.207812607509934 0.207525646505311 0.205601375324 0.205788343953156 0.205601375324 0.205601375324 0.211418899333867 0.208006981134668 0.218354170828814 0.212064667012866 0.209125999659657 4 4 + 7336653 7337145 7336882.364 7336494 7337353 + gene protein_coding_gene FALSE TRUE AT4G12390.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -1.72979792579193 -10.9856590282045 2.85269718725044e-06 0.0202085068744821 10.6167725971463 14.3273821126982 -1.72979792579193 0.206029806783323 AT1G64500_at 8.09741611673159 8.23649597065742 8.84720793676464 8.6544878220258 8.5887874182008 8.28750292222125 10.3654304760777 10.3822065623422 10.4579549334449 10.6916037947563 9.19055573488 8.77203792209954 9.906427177601 9.4652932094584 8.66753764215084 10.1905449329500 10.2864832551180 9.61182841396748 10.7415270059861 0.139544957393942 0.129406824035474 0.133206112852455 0.132595870078084 0.137590314199659 0.135018207303991 0.136260652273287 0.134082903703229 0.132168875653419 0.133632584403251 0.128031454754687 0.130816769384152 0.127542175893884 0.127542175893884 0.129005086716307 0.130010124910634 0.134232880864608 0.127644884936338 0.135261001190959 1 1 + 23957503 23958002 23957752.182 23956896 23958155 + gene protein_coding_gene FALSE TRUE AT1G64500.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Medicago truncatula] (GB:ABE80146.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.89745706600835 -10.9785409775665 2.86734985232466e-06 0.0203094390040156 10.6139475600110 19.0032921268396 -0.89745706600835 0.0664714729555346 AT1G12750_at 7.02629702541779 6.55447892718576 5.15739576775828 4.86452707299076 5.96709256406677 5.96051275128044 7.34184771427576 7.22767037675014 7.4261951773634 7.7897354968579 7.38724160080078 8.01616982747039 7.13441454124112 7.17021638177732 7.24803691202426 7.10093084637415 6.61451828334446 7.07905746839969 8.03481395645153 0.170678855855273 0.165863040079769 0.174123069120672 0.177592585428234 0.164819703660988 0.174580925773943 0.169912053226892 0.167538554421883 0.166702227198113 0.174507908937728 0.161357933176704 0.177461310023658 0.163551280418760 0.166990433380977 0.175298202076861 0.168703810029146 0.176022210404220 0.161591514187850 0.16784260798787 1 1 - 4345117 4345829 4345436.545 4344983 4348326 - gene protein_coding_gene FALSE TRUE AT1G12750.1|AT1G12750.2 rhomboid family protein similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -1.04080822471427 -10.8730309609848 3.09465247006841e-06 0.0219070448356143 10.5716805001517 13.7470134964174 -1.04080822471427 0.0981182018365755 AT2G28950_at 8.67712239170964 9.05290194017597 3.84223756435726 4.63249332704158 6.60103557272927 7.07195076403176 8.21528064284877 8.76394042525436 9.95368305863783 9.4194527388608 9.95431160372488 10.6497085036960 9.35607366337541 9.69261216088842 10.5102989388365 9.45393962588908 7.2604415877022 9.57536497711249 9.7566471717174 0.160878091507663 0.156937506569897 0.186590397113976 0.208085383202493 0.196401923744876 0.181421766403894 0.170253898305491 0.156937506569897 0.158123007739175 0.159302143740000 0.159527312988419 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.195689740803465 0.156937506569897 0.161784880812647 2 2|0 -|/ 12438961 12440063 12439533.7 12438418 12440672 - gene protein_coding_gene FALSE TRUE AT2G28950.1 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A6 precursor (AtEXPA6) (Alpha-expansin-6) (At-EXP6) (AtEx6) (Ath-ExpAlpha-1.8) (EXPA6) [Arabidopsis Thaliana] (GB:Q38865;GB:O81065;GB:Q8LDV8); similar to ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) [Arabidopsis thaliana] (TAIR:AT2G39700.1); similar to Expansin [Brassica napus] (GB:CAA04385.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.64685790835472 -10.8696653869243 3.10222550709467e-06 0.0219575521392161 10.5703200848480 16.7403810980478 -1.64685790835472 0.196438244429977 AT4G16155_at 6.51467356446901 6.63658798742897 4.56440026174808 4.00112903303395 4.71924766947237 5.03947268695435 7.61491750120266 7.49041772193674 6.83739216784288 7.64173491866859 7.53406133733939 7.88624770774215 6.7487529818294 7.12349808458322 8.53294347271541 6.83667267780739 7.02274429931214 7.48195758638775 7.06717093365161 0.229206420332373 0.228670042905603 0.241603582127201 0.253286258158345 0.241586165994470 0.242955928036943 0.242587521767586 0.239036143436183 0.258997678667702 0.231424676383248 0.228670042905603 0.229077738338914 0.228670042905603 0.234766495608859 0.233912745625023 0.237021607925711 0.246312965384860 0.238957474693100 0.239260615048111 4 0|4 /|- 9153609 9154582 9154080.875 9153379 9157278 - gene protein_coding_gene FALSE TRUE AT4G16155.1 dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) similar to LPD1 (LIPOAMIDE DEHYDROGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G16950.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -1.13466317627346 -10.8191554263874 3.21839037276735e-06 0.0227733302777018 10.549811856727 13.1115853575402 -1.13466317627346 0.116112052959808 AT3G07350_at 5.97597518753023 6.72208237086955 3.15300078901244 3.49056707378717 5.12052107178018 4.99365094279343 5.51452551129929 6.0513022446995 5.01915837106328 5.72112571458135 4.46887889250847 4.53870486106238 4.26859571035637 4.30708848706403 4.13457195502843 3.01285932337546 3.92224995408941 4.26583588252697 4.74967175704293 0.267659873918687 0.275791389523473 0.277993712052093 0.274461546042313 0.256475868765940 0.263024372988753 0.2747724999085 0.265572601607098 0.267604445439305 0.2635677744219 0.258996837410152 0.256475868765940 0.259122104305627 0.256475868765940 0.262870480763497 0.272364306989097 0.257993914333929 0.259248637186455 0.257381455776225 3 3 + 2348035 2348535 2348300.182 2347474 2348797 + gene protein_coding_gene FALSE TRUE AT3G07350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25240.1); similar to Os01g0915000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045184.1); similar to uncharacterized plant-specific domain TIGR01615 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93251.2); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -1.46250342011704 -10.7578343153646 3.36596530424542e-06 0.0238074725969278 10.5246821269426 9.76678652271178 -1.46250342011704 0.170864838252124 AT1G15470_at 7.2696558149278 7.36390358856042 6.40599778429027 6.56726598003063 6.19686385404393 6.33395398150114 7.75250861755466 7.63786309219814 6.36254743826414 6.72421399172257 6.30160236185748 6.70708790442168 5.42389098917022 6.12006784361566 6.5592370374094 6.05643965722734 5.43248593483845 6.36487852791215 6.65620444708128 0.205220711495945 0.205508332116056 0.211313654491515 0.202314724292678 0.208769636662250 0.207149726818590 0.206000209392880 0.202314724292678 0.205446168587745 0.202314724292678 0.209970657905936 0.202314724292678 0.213930859817336 0.210446694893825 0.203677187850397 0.203606054585484 0.208597795618329 0.208310122082732 0.216035930351077 1 1 + 5316907 5317595 5317329.091 5315502 5317858 + gene protein_coding_gene FALSE TRUE AT1G15470.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); similar to Os02g0205400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046249.1); similar to Os06g0598900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057997.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.795119860988273 -10.6909422679906 3.53558208426789e-06 0.0249947866503590 10.4969759705388 13.2918515430113 -0.795119860988273 0.0447363454845875 AT4G12600_at 7.60173937516189 7.70070326673136 6.09854593950655 6.59385495747273 5.82293359513347 6.42478125130643 7.78965608868337 8.01412255882867 6.94445015961364 6.99103297336665 6.00485751519707 6.8905637570604 5.39005989259937 6.06842057619146 6.55454093776923 5.42299585496882 5.98049653555292 5.23140791459033 6.85279689279298 0.188766846858390 0.188316244790189 0.183268639379138 0.183268639379138 0.199903899888829 0.195028817505938 0.187761101931549 0.191080500281903 0.191150523970403 0.185962211636024 0.202175549188802 0.185698671759427 0.190499448604138 0.191004718491131 0.191530915162523 0.188000666945096 0.192488896636794 0.196396765303917 0.187205031583717 4 4 + 7453324 7454179 7453860.182 7453199 7454478 + gene protein_coding_gene FALSE TRUE AT4G12600.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); similar to ribosomal protein L7 [Hyacinthus orientalis] (GB:AAT08750.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -1.26401759438154 -10.6443563398207 3.65931684547919e-06 0.0258530735133105 10.4774975235218 13.4419644032275 -1.26401759438154 0.141411253222686 AT1G11850_at 6.0939598858348 6.0881483183674 2.72496300491953 2.46471285212095 4.27934450957093 3.93648622246642 5.78213490949124 5.1779793425563 6.59427781260442 6.05710402901464 7.06564041080585 8.62203980957138 5.78418897592833 5.87976828221866 8.11649574740478 6.45318206019011 3.86000048806522 5.61857378136913 6.42287713283184 0.293385884791802 0.296807557465119 0.328191349628781 0.320218254732673 0.285547024827108 0.294916581824315 0.285608358855153 0.288856842181575 0.288143531695421 0.280990441916041 0.285268935765715 0.306623760114455 0.280170919563584 0.280170919563584 0.312134549218966 0.283514932331254 0.300840792152814 0.287542103054389 0.281939826765005 1 1 + 3999240 3999518 3999333.273 3999198 3999875 + gene protein_coding_gene FALSE TRUE AT1G11850.1|AT1G11850.2|AT1G11850.3|AT1G11850.4 |unknown protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001190956.1); similar to PREDICTED: similar to CG5812-PA [Tribolium castaneum] (GB:XP_969409.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Os07g0688700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060703.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1); similar to putative glycine-rich cell wall protein precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC21356.1)||similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: similar to keratin 7, partial [Gallus gallus] (GB:XP_001236709.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) -1.18363954858288 -10.6178299340246 3.73191775308373e-06 0.0263585350900304 10.4663386187083 10.9600023902965 -1.18363954858288 0.128378065223189 AT3G15520_at 7.01504951684444 6.70097804712759 5.13883508618981 5.02942491802003 5.48037835927458 5.59430160898513 7.74887500120517 7.65742131290016 7.60504337040248 8.13060763554334 8.70692758355466 8.7909572456874 7.16802888430241 8.06119320185046 8.94438878216427 8.08134934300372 6.90532606569809 8.28363434254734 7.82500302730028 0.204069979770365 0.202709079016938 0.209812964906717 0.210221621070969 0.219275582822845 0.222056828637080 0.198181180126038 0.207220330013487 0.206329122001171 0.199859245869184 0.199452877304705 0.205961631117474 0.209641489481764 0.196872790944305 0.203656807553216 0.196872790944305 0.207032371933193 0.200922710686857 0.199057038033486 3 3|0 -|/ 5249779 5250787 5250361.111 5248936 5252513 - gene protein_coding_gene FALSE TRUE AT3G15520.1 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT3G01480.1); similar to Peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor (PPIase CYP37) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (p38) (TLP38) (GB:P82869); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.852835819858138 -10.6106440377165 3.75185955957537e-06 0.0264956322097213 10.4633072134942 14.2812964940766 -0.852835819858138 0.0628628675454847 AT1G02870_at 6.37140739723357 6.28738861817937 4.95080240552386 5.15575525404889 5.44569462455904 5.48715262799258 5.66930788738325 6.19341859806983 5.06854450143065 4.91340979132584 3.97960799352051 4.04652697471168 3.65326404684477 3.66615372770506 4.38754559344148 3.79346667077224 3.56388004172196 4.03577350911196 5.17992261151502 0.227052186419164 0.232533225892005 0.246135738778465 0.233371273563731 0.238460758427356 0.257256594389111 0.240256646226935 0.235579037547811 0.238770864390235 0.225207239506492 0.227192816630321 0.225207239506492 0.228274854592346 0.245618746893399 0.225207239506492 0.230444916257121 0.237868676307583 0.227690880860154 0.232355898563050 1 1 - 637458 638548 638238.727 637214 638677 - gene protein_coding_gene FALSE TRUE AT1G02870.1 similar to hypothetical protein MtrDRAFT_AC161032g9v1 [Medicago truncatula] (GB:ABE85046.1) -1.01685552277360 -10.5897948730627 3.81039206550467e-06 0.0269051783745285 10.4544913037708 10.1674840705334 -1.01685552277360 0.098728501447517 AT3G49260_at 8.25610327399293 8.28939201864577 4.64371280479036 4.37471286521241 6.3753602306192 6.52463669501614 7.22457305038844 7.51664054779552 8.65505366378402 7.93560071582455 9.48882404377867 9.96683257872213 9.03847185504834 9.08419531314404 9.6325215516984 9.00589593160645 6.96249481059694 8.74493729581543 8.71124381451074 0.174234394146238 0.169448389492314 0.187708157580689 0.193733968260232 0.174768704264305 0.183622455801581 0.177245559205402 0.175709772775175 0.176776568384345 0.181961838422027 0.171072474193829 0.173772949381199 0.169069687917114 0.173783272876195 0.175498488630008 0.175357501836883 0.182845138306693 0.169069687917114 0.173692716393873 3 3 + 18276288 18276820 18276562.909 18273415 18277006 + gene protein_coding_gene FALSE TRUE AT3G49260.1|AT3G49260.2 IQD21 (IQ-domain 21); calmodulin binding similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQ calmodulin-binding motif, putative [Medicago truncatula] (GB:ABE77889.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to Os02g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046615.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.892757982975636 -10.5502142328715 3.92432419282986e-06 0.0276978801529932 10.4376703130895 15.3628853044365 -0.892757982975636 0.0736359274855597 AT2G43200_at 4.56162264984808 5.00427540403507 3.37681729993146 3.47602426854061 4.23033112223463 4.09076882752766 5.32704748832903 4.90033452557625 5.21545669698627 5.2013622017163 4.92952213602437 4.39668229273249 5.14413165999976 4.39758067317129 4.43216072011632 4.45468078083557 4.19836284831898 4.1190281409834 6.06572550589157 0.223138228542218 0.227322884454024 0.223661891240149 0.228364469047916 0.220038104886858 0.234759942006159 0.220741860082854 0.23052913826546 0.229698002009028 0.233933128149274 0.220038104886858 0.223616726453381 0.232378989312056 0.222393808348457 0.223161857196624 0.221653584085155 0.233912114178722 0.241362479927275 0.231377255024196 2 2 + 17966869 17967478 17967101.545 17965307 17967613 + gene protein_coding_gene FALSE TRUE AT2G43200.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Os10g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065036.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Os06g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056546.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.06999872453190 -10.4983087050424 4.07951058385918e-06 0.0287850266797104 10.415442260714 9.37250276061326 -1.06999872453190 0.110449699926187 AT3G19680_at 4.46614203346458 4.87952416822695 3.9226803399354 4.10604160564031 4.04417378237571 3.87931956672482 6.00953312952657 6.10672017476831 8.20322716006323 5.77476302675573 8.05762472591819 6.96657158171971 6.49566704513526 7.92491971593063 5.93057779025254 6.28488803904744 5.07443775365607 5.72079247994783 7.18386400829794 0.228326034408317 0.232432272915776 0.244074244879109 0.228795804610345 0.227167628456213 0.233758019093378 0.224515448174418 0.228284871315043 0.249299676598103 0.222769540746413 0.229463671790392 0.225295476563084 0.225318747987611 0.227006047065947 0.225141860396985 0.222769540746413 0.241887029994873 0.229092993358884 0.231280784179347 3 3 + 6841529 6842044 6841761.909 6840287 6842326 + gene protein_coding_gene FALSE TRUE AT3G19680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50040.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93135.1); contains InterPro domain Protein of unknown function DUF1005; (InterPro:IPR010410) -0.93722127987444 -10.4671479765326 4.17594309519636e-06 0.0294529266504199 10.4020049931472 11.4822099949945 -0.93722127987444 0.0849781886652017 AT2G30500_at 6.70113829898135 6.62478573748878 4.81974116822499 5.02750260329039 6.00413631753876 6.08293200529737 5.85424489067023 5.80975530126828 5.65410480504511 6.67751078495583 5.88140590853545 6.73033084834553 6.00793699015508 5.33146751038372 6.05372205351174 5.85046230807568 4.76919643861875 5.43411072745931 7.26027748551205 0.200244199245711 0.198451739828922 0.194384430596392 0.193019081848099 0.197599625926210 0.205636210520906 0.192309000112649 0.191899111938918 0.206455189745557 0.193807974796384 0.195898512892753 0.195735922300882 0.19628937319414 0.195492711565521 0.195710324248929 0.190300870752595 0.196424386110454 0.190540549233492 0.196691164837319 2 2 - 13005406 13005879 13005634.091 13005236 13007179 - gene protein_coding_gene FALSE TRUE AT2G30500.1 kinase interacting family protein similar to kinase interacting protein-related [Arabidopsis thaliana] (TAIR:AT5G58320.2); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE94140.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.768602480274813 -10.4653438731208 4.18160327976474e-06 0.0294886663289009 10.4012248715605 12.0095096019983 -0.768602480274813 0.0413823644156035 AT1G56050_at 6.38651568760922 6.77414131476755 4.75325266689146 5.24036618281729 5.17619193633189 5.18622390055377 8.74011973659523 8.53137097986769 6.04576452660255 7.17383615915737 6.26301298027425 7.96711141419771 6.5861817360613 6.65669646122199 8.5881057275866 6.20192870128038 6.86541844718435 6.17296382626695 6.45668128585176 0.218352645209666 0.216730362946226 0.220012536557960 0.220372244821507 0.214690007644096 0.224576914604412 0.219418678578796 0.220198270162587 0.220451848157823 0.220473724412033 0.214227209267390 0.214086807829132 0.214759390604331 0.214086807829132 0.217234218231553 0.214086807829132 0.232715848279284 0.214480400077737 0.214086807829132 1 1|0 +|/ 20968749 20969813 20969091.9 20967384 20970006 + gene protein_coding_gene FALSE TRUE AT1G56050.1 GTP-binding protein-related similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G30580.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK09228.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Protein of unknown function DUF933; (InterPro:IPR013029); contains InterPro domain Conserved hypothetical protein 92; (InterPro:IPR004396); contains InterPro domain TGS-like; (InterPro:IPR012676) -1.08255575175301 -10.4516654268172 4.22479630305785e-06 0.0297848139365579 10.3953024321047 13.0842418351608 -1.08255575175301 0.113639068065243 AT4G37310_at 8.48592679614965 8.51764805405096 8.55677650003096 8.67802023519966 7.8860077140986 7.56371484740798 8.95332288556696 8.77368652075742 7.67659274743758 8.8324950242299 6.68741424587742 6.91165077114238 7.3999728824616 7.33757358469315 6.34700082512073 7.60846518108444 7.85921760937554 7.37217810473517 8.66993828641491 0.179329988676595 0.175172596891162 0.179079066491926 0.180400776688412 0.173281676584214 0.184737248162229 0.176649181421623 0.175683399218399 0.182306744547227 0.173600392416739 0.174590665469196 0.180365289090725 0.185820826446869 0.185275380508234 0.191704061026723 0.173986832540418 0.184209079668765 0.184885421506963 0.172873593747866 4 4 - 17556161 17556574 17556366.636 17555921 17558887 - gene protein_coding_gene FALSE TRUE AT4G37310.1 CYP81H1 (cytochrome P450, family 81, subfamily H, polypeptide 1); oxygen binding member of CYP81H similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37330.1); similar to isoflavone 3'-hydroxylase [Medicago truncatula] (GB:AAQ20041.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.857045387706551 -10.4362952605417 4.27392371796916e-06 0.0301226143642466 10.3886313103683 16.2186093624522 -0.857045387706551 0.0674354294848316 AT1G12330_at 5.26892814786064 5.29946791474848 4.53663151693511 4.44712543728505 5.86603771059787 5.60833442003778 6.02373540197935 6.13821658665259 6.93584512066525 6.69466238236882 6.38484273464886 6.48148850520437 5.7496629643331 5.95132516728667 5.22425367662663 6.09882606022674 4.47170852793503 6.35589428640469 6.95272110984436 0.224564469735206 0.212281529924595 0.219781869946945 0.223138136509378 0.209467443919843 0.228614736697936 0.211969139892835 0.213480588405046 0.215324740783403 0.209467443919843 0.213519635982514 0.213384927929529 0.212210626621457 0.213732457842561 0.211305238653053 0.210391125195596 0.24169690998913 0.213174956720592 0.214741425427454 1 1 + 4196333 4196597 4196449.5 4194656 4196747 + gene protein_coding_gene FALSE TRUE AT1G12330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12900.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE94280.1); contains domain TNF receptor-like (SSF57586) -0.79469035277793 -10.3990710253591 4.39555377038161e-06 0.0309666763123384 10.3724034776573 11.7489728643251 -0.79469035277793 0.0514705834158911 AT4G01080_at 3.79504195514592 4.39136872749399 3.92759149954994 4.23809455578392 2.89532989224934 3.38642082079381 9.29815164417707 9.4158250827774 4.03496463614042 7.0554973006086 5.7204693063071 6.06489376683053 6.66431643275298 6.22674183461424 5.92819197727162 7.29536488940348 7.1522057374035 6.26229672625738 6.35817993319583 0.270160906401097 0.2629297110682 0.263351003375549 0.265558285891043 0.264595206546254 0.268188283583339 0.267708960839058 0.267656099642224 0.264821118227788 0.26484591234439 0.266593020640865 0.262405636980753 0.260797890692709 0.268762729293721 0.267891232853588 0.260797890692709 0.274757685123599 0.271989726551356 0.268830430009827 4 4 - 466762 467195 466986.182 466391 468294 - gene protein_coding_gene FALSE TRUE AT4G01080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01430.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.25757076654876 -10.3856531898909 4.44033535022238e-06 0.031268841536266 10.3665291185100 11.2837400424981 -1.25757076654876 0.145513670914210 AT2G40360_at 7.51477125417461 7.36884988720446 6.75545243370504 6.60919545037157 6.30266380344177 5.89184106212274 6.71150066557639 7.04879037086147 4.99793960704266 6.25267358045346 4.36832186776501 5.32649752356877 4.59792662213885 4.30270145425981 5.1037936162944 5.11891017663429 5.03110866618614 4.39484374423938 6.70312204152938 0.273861778947771 0.270911879544364 0.276266380615003 0.274288767443048 0.276383526388894 0.275597805411825 0.275473091833825 0.273655669575227 0.294957661353264 0.285249478309453 0.278276545645696 0.271650474573403 0.279634291366975 0.284401097314861 0.279981235576587 0.272553223302828 0.287296931471354 0.280254530457610 0.281433797979692 2 2 - 16860220 16860808 16860536.909 16859958 16863768 - gene protein_coding_gene FALSE TRUE AT2G40360.1 transducin family protein / WD-40 repeat family protein similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to putative WD-40 repeat protein [Trifolium pratense] (GB:BAE71307.1); similar to WD40 [Cucumis melo] (GB:AAU04772.1); similar to putative transducin / WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84089.1); contains InterPro domain BOP1, N-terminal; (InterPro:IPR012953); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.987627653916643 -10.2874120204598 4.78408175957805e-06 0.0336607992603912 10.3231133601087 12.1579288002128 -0.987627653916643 0.098690302851886 AT3G47430_at 8.01090706644162 7.9348863190076 8.18889612668928 8.07861708852999 8.08103682446546 7.7590600177181 9.59620956025315 9.96307397814463 8.60262047254106 9.26742418565495 7.31726375370277 7.4033701187626 8.76126889865743 8.10783192940072 7.16911731532925 8.85947698345254 8.67296208160526 8.0071695107997 9.2760270038044 0.202431930133394 0.195566462815162 0.204537849086322 0.20115691531712 0.188505295605680 0.201448530060581 0.204031845802234 0.201950504684133 0.213000300716052 0.189920088553075 0.199103225358566 0.215347057003837 0.197697925040866 0.201040414342628 0.214014663854292 0.198066250702948 0.202292524207165 0.203801217085121 0.188505295605680 3 3|0 +|/ 17491872 17492636 17492358.7 17491588 17492777 + gene protein_coding_gene FALSE TRUE AT3G47430.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. similar to peroxisomal biogenesis factor 11 family protein / PEX11 family protein [Arabidopsis thaliana] (TAIR:AT1G47750.1); similar to Os04g0534600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053418.1); similar to Os03g0302000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049868.1); similar to Peroxisomal biogenesis factor 11 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95492.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) -0.930374848323696 -10.2541381400996 4.90712822957694e-06 0.0345118328386146 10.3082453075723 16.9945849366382 -0.930374848323696 0.0875935605926446 AT4G12730_at 4.875026591873 5.32109030450211 0.897252623889382 1.18136032685966 1.42508202168467 2.03649159803192 6.04413975932896 6.57204627106111 7.36928782006195 6.212023636696 9.88330609185022 9.43360167514755 8.16313510493195 9.12485665397508 9.50771467469081 8.36784599485412 5.1786058447885 7.91290458817193 7.00639473402733 0.300467477620355 0.304099481429571 0.314267564716817 0.322392363056388 0.307249986210107 0.306853538558008 0.300467477620355 0.304039277542952 0.300467477620355 0.305375582275760 0.305755535606301 0.305812834148413 0.300608661865731 0.304350267742379 0.303864878798863 0.300467477620355 0.30333408682927 0.304939249901964 0.303375032840629 4 4 - 7491620 7492163 7491881.909 7491380 7492873 - gene protein_coding_gene FALSE TRUE AT4G12730.1 FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (FLA1) [Arabidopsis thaliana] (TAIR:AT5G55730.1); similar to putative fasciclin-like arabinogalactan protein FLA2 [Trifolium pratense] (GB:BAE71278.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.36705074539269 -10.2254074115993 5.01620593849953e-06 0.0352589115417132 10.2953401323717 11.1985937165604 -1.36705074539269 0.167084880847338 AT4G31290_at 8.21366393223934 8.0620973818363 4.18368700144669 4.20869027110978 7.33127427080904 7.3273368463552 6.8298072340763 6.25175686316408 8.14124862600972 8.00892730424305 8.75817873766432 8.61209374730498 8.15981038041532 7.95593816329032 8.55646622176385 6.96175656687128 6.62810834534579 8.06956686156562 9.03756610796849 0.210938789018383 0.207721294864060 0.227633029345365 0.214814278049264 0.211268131414584 0.218741188518355 0.206860591144536 0.215760656030068 0.228583673089894 0.212846458175943 0.206210509364303 0.206423330076927 0.211141697246533 0.219537646329571 0.208170414091174 0.208595676029291 0.206680969347539 0.212702900682933 0.209633540252590 4 0|4 /|+ 15187096 15188244 15187750.375 15185964 15188490 + gene protein_coding_gene FALSE TRUE AT4G31290.1 ChaC-like family protein similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT5G26220.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to meloidogyne-induced (GB:ABA46779.1); contains InterPro domain ChaC-like protein; (InterPro:IPR006840) -1.00487919505578 -10.2131975542625 5.06337441933535e-06 0.0355853954190889 10.2898368068795 14.7303661705136 -1.00487919505578 0.103508581432153 AT1G71840_at 8.27681516438606 8.03832473627548 8.26384201459835 8.10344296236266 7.54462010623231 7.27351493281454 8.60042642098611 8.64210623265344 7.12119350687444 7.1783980587478 5.61576647233523 5.84976230917381 6.25995593730105 5.53396687531951 6.21761050438745 6.07504270491677 6.41632194359834 6.13185161855926 7.0130817145891 0.236448012084101 0.232619129538459 0.237799893212615 0.23373196551787 0.231853608882151 0.233321287285132 0.241298172084672 0.233577838854592 0.23498130041559 0.229668069317916 0.233199966053546 0.233114988976667 0.232849843406495 0.234787790473687 0.231918277165782 0.229420703081721 0.23256968790402 0.235825593045029 0.229274302461509 1 0|1 /|+ 27027354 27027961 27027801.556 27025880 27028213 + gene protein_coding_gene FALSE TRUE AT1G71840.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to putative an (GB:AAK14409.1); similar to Os03g0685600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050927.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.842376382805748 -10.1932828404009 5.14136844051921e-06 0.0361283960315285 10.2808363486903 14.6512661825066 -0.842376382805748 0.0687531961974697 AT1G13650_at 8.6922035763903 8.96319266739046 8.9997004807023 8.83025427043252 8.73195278682283 8.65705649960246 11.6294066034008 11.4535730345858 10.9081831511943 11.3223104147552 10.6464545148318 10.9624262554885 10.1814877206514 10.8822576729093 10.6949910329049 11.5277373481698 10.9335634460641 10.4497982115085 10.9284113442434 0.0975231645496855 0.0929104806826267 0.105294562871118 0.104932026113064 0.096563827166267 0.0984518358644812 0.0933289520469836 0.0960024975694612 0.106626975831359 0.0938980356959104 0.0933462360746438 0.0938027451959223 0.0947700975523908 0.095591219767565 0.0968633859398527 0.0925121417853764 0.101086481905877 0.101606063090258 0.0943008233835784 1 1|0 -|/ 4680569 4681215 4680917.8 4680429 4682193 - gene protein_coding_gene FALSE TRUE AT1G13650.1|AT1G13650.2 similar to 18S pre-ribosomal assembly protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G03810.3); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_813437.1) -0.823990869566685 -10.1765536958503 5.20791833347424e-06 0.0365752104559896 10.2732522143194 20.4135714042728 -0.823990869566685 0.0644437545227012 AT4G08390_at 8.03894978086872 8.26969752196283 8.2925575573019 8.47193473835557 5.68387213957821 5.52793492172734 9.07534006465276 9.2087843644114 5.84246687115263 7.5265803464949 6.69939073125807 6.77784034182206 6.52167749415238 6.62876759019504 7.09692896481784 6.12245728588262 6.57844905487101 7.19709878937454 6.63618132718577 0.234569775049735 0.236326117875515 0.233990333029315 0.247667905818546 0.229913755554365 0.238023193172665 0.244891620828741 0.245678941293923 0.243656084776777 0.228551434328838 0.243109247612288 0.228551434328838 0.231496988592434 0.228551434328838 0.231242060234578 0.231672114602432 0.230146555962497 0.228551434328838 0.228551434328838 4 4|0 +|/ 5315886 5316805 5316421.222 5314902 5317453 + gene protein_coding_gene FALSE TRUE AT4G08390.1|AT4G08390.2|AT4G08390.3 SAPX; L-ascorbate peroxidase|SAPX Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase S, chloroplast/mitochondrial precursor (EC 1.11.1.11) (Stromal ascorbate peroxidase) (sAPX) (AtAPx05) (APXS) [Arabidopsis Thaliana] (GB:Q42592;GB:Q9STM9); similar to TAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT1G77490.1); similar to stromal ascorbate peroxidase [Brassica oleracea] (GB:BAD14932.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.809850663565458 -10.1252414338562 5.41808358933460e-06 0.0380241106299502 10.2498558670185 14.5067517843529 -0.809850663565458 0.0618036549272198 AT4G23290_at 9.21634787674448 9.58463959126852 8.15031895423978 7.68024869653654 8.91990298083941 8.58765545446174 10.8673443604745 10.6321130058060 11.0097985671396 10.8573397401259 10.5569513080656 10.6165609413329 10.4171609501567 10.4550871190799 10.3473301440362 10.6690006192476 10.0812326402126 10.3545009439832 10.883554903563 0.173920591992598 0.156646352634270 0.180960582431364 0.184994352449072 0.162682824246744 0.167383847321276 0.161715435029799 0.162094753757126 0.172392099205834 0.164936152085346 0.171200313769202 0.156646352634270 0.159582527017207 0.166878398647293 0.168056146044897 0.158300372743750 0.177872019721663 0.175899505442588 0.162051449149406 4 4 - 12177957 12178458 12178130.375 12177748 12180836 - gene protein_coding_gene FALSE TRUE AT4G23290.1|AT4G23290.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11480.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.11012467036626 -10.1222889851521 5.43045969259084e-06 0.0381055356629099 10.2485034903084 19.8818842751500 -1.11012467036626 0.125070407217400 AT1G29720_at 7.32416797805874 6.88430334291679 6.30788784986224 5.73004477763242 6.25726844800618 5.77683783996642 8.41333596594363 7.9821339452981 9.40955208427263 9.12099156686665 8.41486271827485 9.08667325278738 7.64209679043459 8.49277409537456 8.09314477178189 8.02838308599995 7.25049773177886 8.12064263012032 8.99577444209278 0.183560792523286 0.181062980200451 0.18450423668287 0.187711964245305 0.182275602825900 0.185465648956700 0.181476029715696 0.185072608908892 0.183292680902002 0.182895314875503 0.175879396083644 0.175847601750906 0.179473789127764 0.180400488027679 0.174817620811632 0.175409214360808 0.204173259003176 0.182236377439661 0.18063222133157 1 1|0 -|/ 10393932 10394611 10394157.778 10393783 10395589 - gene protein_coding_gene FALSE TRUE AT1G29720.1 protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G29740.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.33364027951456 -9.92833459423005 6.3166017687886e-06 0.0442162123815202 10.1581655732878 15.4927843929504 -1.33364027951456 0.168151105848903 AT3G21110_at 4.70094316160233 5.18618804071217 4.31036314784268 4.35010542047876 4.43323269395754 4.44966850778064 6.22632555356076 6.30830407046697 5.03836731364623 5.08637665728968 4.05129094542947 4.51737468499029 4.24345254683428 4.29858730184264 4.72037631071061 4.9067462426207 4.67874397484418 4.11638697343699 4.85731572182682 0.219502971633968 0.212164837882141 0.210057601015279 0.214970787659613 0.210057601015279 0.217148668749795 0.217807407737587 0.214261388694061 0.217161129771017 0.212781781276793 0.211938517431903 0.211673389975919 0.218286439863514 0.214602675503498 0.212130312440592 0.215241933697803 0.215210224199905 0.214728232736667 0.211522504081352 3 3|0 -|/ 7402715 7404141 7403575 7402487 7405647 - gene protein_coding_gene FALSE TRUE AT3G21110.1|AT3G21110.2 PUR7 (purin 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.|5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone. Identical to Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor (EC 6.3.2.6) (SAICAR synthetase) (PUR7) [Arabidopsis Thaliana] (GB:P38025;GB:Q8RXX4;GB:Q9LJC1); similar to SAICAR synthetase (GB:AAA16231.1); contains InterPro domain SAICAR synthetase; (InterPro:IPR001636) -0.885998894534793 -9.86961928013453 6.61567379326644e-06 0.0462898695314853 10.1302266919737 9.71346120963834 -0.885998894534793 0.0854884178724412 AT4G37540_at 4.94517366061162 5.47309970944239 5.13253965874498 5.58378782038808 5.59033629262104 5.37959877351518 7.3126163082001 7.49849811960887 6.87361122096491 6.67964061607772 5.78192925432842 5.15463485805322 4.15012926546675 5.30584759718121 5.272769268625 3.84316925813203 5.67446876264165 5.83406400558601 5.80231018513448 0.242066189273739 0.225538971413548 0.234360961192192 0.231471796461691 0.234786876094666 0.237954692899171 0.235891796569741 0.226164472732472 0.233975525947619 0.226406320776918 0.232637022577772 0.227995462562302 0.228746239559843 0.228937393515894 0.225260682734705 0.229956096953950 0.248914036983637 0.225260682734705 0.228366669326971 4 4 - 17639721 17640149 17639936.727 17639527 17640651 - gene protein_coding_gene FALSE TRUE AT4G37540.1 LOB domain protein 39 / lateral organ boundaries domain protein 39 (LBD39) Identical to LOB domain-containing protein 39 (LBD39) [Arabidopsis Thaliana] (GB:Q9SZE8;GB:Q8LBC9); similar to LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) [Arabidopsis thaliana] (TAIR:AT3G49940.1); similar to lateral organ boundaries domain protein [Caragana korshinskii] (GB:ABG90382.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -1.10525439339450 -9.85282735855277 6.70407113103655e-06 0.0468949775616007 10.1221850760971 11.6539465634636 -1.10525439339450 0.129651690951885 AT1G53160_at 6.87965476134522 6.27181695694806 7.52488326463735 7.78835603524152 8.98744093677544 8.43616963267647 9.4485926952210 9.40943794677327 9.78034501013008 10.0734109347449 7.65583159238767 6.05429328716722 7.08689635130672 7.21905199695854 5.8583633844567 7.19786603938656 7.9734054841595 6.44537201829691 8.78371158566319 0.244148401195792 0.239090332060378 0.247386210318892 0.232350785403471 0.235242627886461 0.244082477380638 0.238413235237679 0.237601314988895 0.237772178694492 0.235467080967301 0.235345246339427 0.236439380348048 0.240696270202116 0.239287358860434 0.245063666845268 0.230341383945976 0.241852747517628 0.244175598585773 0.232299977512981 1 1|0 +|/ 19810261 19810706 19810439 19810087 19811276 + gene protein_coding_gene FALSE TRUE AT1G53160.1|AT1G53160.2 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor|SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. Identical to Squamosa promoter-binding-like protein 4 (SPL4) [Arabidopsis Thaliana] (GB:Q9S7A9;GB:Q9SMX8); similar to SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G15270.1); similar to Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 (GB:1UL4); contains InterPro domain SBP; (InterPro:IPR004333) -1.2138003068268 -9.84720674490364 6.7339518296231e-06 0.0470905251445543 10.1194882413873 16.3343977934245 -1.2138003068268 0.149300933407350 AT4G00490_at 7.86341372244175 8.19368200025321 7.3086827535885 7.1727283100361 6.82509312293458 6.8133923190729 8.0993913301776 8.22932843790613 7.80396565003205 7.799275089358 7.08470676552149 7.52374989676291 6.4140389018749 7.07435081538279 7.3804372206286 7.30952896144581 6.38325136743671 6.82494940346311 7.00767896524975 0.202883459305397 0.197087318465289 0.205014064773896 0.198118989672162 0.193532044888524 0.20611852555041 0.203265286624642 0.205779558565390 0.203684332455229 0.211105640100359 0.197875925022451 0.203008280130282 0.204596739216372 0.20137074765015 0.202892468533998 0.200342087346357 0.217931656653761 0.214017199069802 0.209153740121358 4 0|4 /|+ 224249 224819 224520.889 222320 225131 + gene protein_coding_gene FALSE TRUE AT4G00490.1 BMY9 (beta-amylase 9); beta-amylase similar to BMY4 (beta-amylase 4), beta-amylase [Arabidopsis thaliana] (TAIR:AT2G45880.1); similar to Os09g0569200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063976.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O64407); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.802038157301024 -9.84239093034788 6.75967161383192e-06 0.0472568642522989 10.1171755062480 14.8313889502736 -0.802038157301024 0.0658020434970249 AT4G02990_at 5.80651108351206 6.2040631837047 5.24707532631359 5.48912282842147 5.24454147823456 5.29127333076426 7.07963020962536 6.7013290885126 4.63546143977925 5.43163620624614 3.77879478573753 4.31674579346664 4.61336247472414 3.80150166793433 4.73017007030442 4.98937037968278 4.58640107592819 3.63253310989743 5.28335990044286 0.215260295186663 0.216791368684324 0.212409928104230 0.220522425485124 0.216045414319267 0.217436915294747 0.216582158827187 0.216311418155146 0.216724055864035 0.212409928104230 0.217454617248947 0.215709038725893 0.212409928104230 0.214519640617620 0.219254287555564 0.212960946825354 0.233062887344653 0.223923965871023 0.221290866021439 4 4 + 1323220 1323670 1323391.636 1321859 1324004 + gene protein_coding_gene FALSE TRUE AT4G02990.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G44020.1); similar to Mitochodrial transcription termination factor-related [Medicago truncatula] (GB:ABE94205.1); similar to Os05g0404000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055500.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.97029470642593 -9.83150481777606 6.81821374946186e-06 0.0476456776812395 10.1119405965645 10.5944078670688 -0.97029470642593 0.104110794650298 AT1G70830_at 6.34676799493895 6.0211303113872 4.57007535963277 4.95720274423933 3.9521169808966 3.81631964701307 8.68244236432202 9.01291700516773 4.97326051090978 8.76138631910425 9.2200133557091 9.54888414142193 8.79069014191613 9.8220998119181 8.42131486037547 6.94455293280406 9.13061203524245 9.05775432191258 9.19447591524347 0.245246036027308 0.243157304597968 0.255737877082551 0.245685610855450 0.262717192325611 0.25529179616487 0.235498051868055 0.231822999484991 0.251312440822115 0.231822999484991 0.235174691464101 0.235211607932361 0.231822999484991 0.236927609402477 0.231914545481716 0.243919629399435 0.233271093091416 0.232045627176191 0.231822999484991 1 1 - 26713985 26714474 26714253.778 26713609 26715124 - gene protein_coding_gene FALSE TRUE AT1G70830.1|AT1G70830.2|AT1G70830.3|AT1G70830.4 Bet v I allergen family protein|MLP28 (MLP-LIKE PROTEIN 28) Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)|Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70850.2); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.983968225465943 -9.8158086647659 6.9036158873451e-06 0.0482286605889928 10.1043755410562 14.1748871085739 -0.983968225465943 0.107176864698593 AT1G68540_at 5.46768640908296 5.29643977599344 4.03164231344699 4.38605765990838 5.06280585347714 4.82230170885655 6.65936420007845 6.3760225656805 4.47329735243392 5.22924717729841 4.06398806268171 4.35684111227801 4.53252869897349 4.90744398447035 3.96737927253282 4.05895994000259 4.82703688023379 4.37216918376628 4.83822002563558 0.230062887419911 0.229203555890729 0.228004178588175 0.224805089492250 0.216362506559337 0.223393721207357 0.22141014704031 0.226350098570487 0.225944048440326 0.219854321281706 0.216362506559337 0.223982994103379 0.221198467792405 0.217258728046021 0.217460985979115 0.216362506559337 0.218591010979695 0.218947198531048 0.219424035752085 1 1 + 25724201 25724872 25724468.727 25723689 25725028 + gene protein_coding_gene FALSE TRUE AT1G68540.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G25460.1); similar to dihydro-flavanoid reductase-like protein [Zea mays] (GB:AAK52955.1); similar to Os01g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041904.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.917652240187579 -9.8056599515459 6.95946635071556e-06 0.0486118724597482 10.0994734057768 9.87914751597723 -0.917652240187579 0.0936832301662172 AT2G10940_at 10.0854959246034 10.6580344049879 4.79146156012965 5.08436604727703 8.76948839776468 9.2897064662949 9.40789093328723 10.1982102162877 11.7253105350352 10.9778902910781 12.5414479426199 12.2315481459402 11.7081475817329 11.4920791765833 12.4386915800447 11.0166818301053 9.03321781269686 11.8383151426245 11.5387315355427 0.129699677988252 0.129699677988252 0.188761674259175 0.171848111713330 0.136826029073777 0.143835161785132 0.135205460212432 0.135157934931937 0.141347145763889 0.131297742603656 0.133538251208884 0.132406064141827 0.133900956771097 0.13515068724036 0.133030942995607 0.129699677988252 0.14675007442438 0.129699677988252 0.132728297710700 2 2 - 4318260 4318598 4318432.182 4317494 4319185 - gene protein_coding_gene FALSE TRUE AT2G10940.1|AT2G10940.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71274.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.49005677713341 -9.77323475707891 7.14129682952361e-06 0.0498748170573929 10.0837541449563 20.0113285465434 -1.49005677713341 0.197981248567749