ID expr.6.4.exp_090507.CEL expr.6.4.exp_150607.CEL expr.6.5.exp_090507.CEL expr.6.5.exp_150607.CEL expr.6.7.exp_1_040507.CEL expr.6.7.exp_150607.CEL expr.7.2.exp_1_040507.CEL expr.7.2.exp_150607.CEL expr.6.4.3_exp160807.CEL expr.6.4.4_exp160807.CEL expr.6.5.11_exp160807.CEL expr.6.5.2_exp160807.CEL expr.6.5.6_exp160807.CEL expr.6.5.8_exp160807.CEL expr.6.7.19_exp160807.CEL expr.6.7.20_exp160807.CEL expr.6.7.21_exp160807.CEL expr.6.7.22_exp160807.CEL expr.7.2.1_exp160807.CEL se.expr.6.4.exp_090507.CEL se.expr.6.4.exp_150607.CEL se.expr.6.5.exp_090507.CEL se.expr.6.5.exp_150607.CEL se.expr.6.7.exp_1_040507.CEL se.expr.6.7.exp_150607.CEL se.expr.7.2.exp_1_040507.CEL se.expr.7.2.exp_150607.CEL se.expr.6.4.3_exp160807.CEL se.expr.6.4.4_exp160807.CEL se.expr.6.5.11_exp160807.CEL se.expr.6.5.2_exp160807.CEL se.expr.6.5.6_exp160807.CEL se.expr.6.5.8_exp160807.CEL se.expr.6.7.19_exp160807.CEL se.expr.6.7.20_exp160807.CEL se.expr.6.7.21_exp160807.CEL se.expr.6.7.22_exp160807.CEL se.expr.7.2.1_exp160807.CEL Chr ChrList StrandList From.Min From.Max From.Mean start end strand type Note isChr5 isClean IDlist Short.description Currator.summary Description logFC t P.Value adj.P.Val B A M M.se AT5G13930_at 3.09944572301999 3.36867923834480 2.32383926550853 2.11702641830610 1.77483795882963 2.00861115423344 9.67082782074494 10.1024350844910 8.61208096353118 9.17755047959627 7.08351846326754 9.02512934207427 3.45007011868116 6.36008815822974 8.83192281455309 6.08976083354929 3.38718791330455 5.75980862736084 8.2329886885694 0.337477760358831 0.334558873016972 0.356201823792234 0.350888405825822 0.359924370125840 0.370107829620834 0.333847469740514 0.333243907388479 0.341969445220227 0.333007693121797 0.332349991621826 0.332286127846713 0.338596899238924 0.332035741417653 0.330930904040266 0.336925578931195 0.347302505176225 0.337704016188385 0.339864043333196 5 5 + 4489533 4490004 4489752.636 4488690 4490266 + gene protein_coding_gene TRUE TRUE AT5G13930.1 CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. Identical to Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase) (TRANSPARENT TESTA 4 protein) (CHS) [Arabidopsis Thaliana] (GB:P13114;GB:Q43132;GB:Q940L6;GB:Q941R9); similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT4G34850.1); similar to chalcone synthase [Halimolobos perplexa var. perplexa] (GB:AAF23569.1); similar to chalcone synthase [Arabis fendleri] (GB:AAF23565.1); similar to chalcone synthase [Capsella rubella] (GB:AAF23581.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -4.48507857319755 -45.8752370098840 1.50472956565657e-11 3.09264921474759e-07 14.4289198803744 11.7695340801564 -4.48507857319755 0.103282319779167 AT5G48900_at 7.44860946052577 7.76787855361145 3.13172336620234 3.33978611962973 3.53139212348504 3.55960979494557 9.10090574594247 9.0764909694055 8.68736278194393 8.774421035492 9.25417141373567 10.2158610555911 9.35589233070234 8.89008280245618 10.0219984348889 9.26028086425271 6.98517370699792 9.27584586077063 9.7813515285682 0.194242648955921 0.195667842116667 0.215600967169476 0.207135089606986 0.205956775281655 0.219566401616521 0.190008267526523 0.192879144219964 0.192266146682974 0.193762003827435 0.190008267526523 0.192540613107318 0.190008267526523 0.19041589104666 0.194990945251636 0.190305971062872 0.209000953099424 0.192421658697408 0.190008267526523 5 5 + 19845304 19846108 19845828.273 19842363 19846318 + gene protein_coding_gene TRUE TRUE AT5G48900.1 pectate lyase family protein Identical to Probable pectate lyase 20 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q93WF1;GB:Q8LDB4;GB:Q9FI81); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase B [Fragaria x ananassa] (GB:AAK66160.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -3.42350288385476 -42.0521913181807 3.16148110190890e-11 3.24887350870641e-07 14.3728158574917 14.9887787287230 -3.42350288385476 0.0662632570616535 AT5G18670_at 3.50391599405539 3.96067445112727 3.16662472133112 3.48966025838318 3.11978461979407 3.09652429721134 6.56467577901281 6.90197857498299 6.72903782161662 6.85955582403824 4.74512429024397 4.58911138859817 4.51777061893542 4.82204469125081 4.39626287682150 6.32429666529723 5.05527519145082 4.97430570589577 6.92006095604967 0.227959309368675 0.227932729885303 0.224393829013893 0.228750457381947 0.231869208946579 0.235600618944119 0.222814500551962 0.223394784325454 0.231383483186709 0.237437899191982 0.229372306210144 0.222814500551962 0.223790912842886 0.224252449575347 0.232226165775083 0.227231260528885 0.234354523555881 0.231021460348456 0.231745141463686 5 5 + 6227431 6227967 6227733.636 6225958 6228134 + gene protein_coding_gene TRUE TRUE AT5G18670.1 BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -2.89599971917764 -28.1915206978442 9.50028522999429e-10 3.25430012220611e-06 13.9656962179260 10.1076009015522 -2.89599971917764 0.113121965295774 AT5G63180_at 9.56642419005597 9.85791908060948 4.12932826198402 4.54225399908764 8.10032854185563 7.80268176060606 10.2159110552912 10.3823852820264 10.2711099158121 10.3756623777726 10.7172746819967 11.6576935036754 10.3633746141869 10.6185409208634 11.2756183848359 10.9567198475841 8.89672653367361 10.5638625144385 10.7243884954419 0.135317784981752 0.129882531475144 0.163552272178738 0.176451978883824 0.135060474445621 0.145512467700610 0.132564606325519 0.131884233861212 0.137919728553076 0.128838997995457 0.128838997995457 0.128838997995457 0.128838997995457 0.128838997995457 0.130896025361278 0.128838997995457 0.142099584598210 0.133794345331782 0.128838997995457 5 5 - 25358340 25359365 25358649.182 25358180 25360345 - gene protein_coding_gene TRUE TRUE AT5G63180.1 pectate lyase family protein Identical to Probable pectate lyase 22 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q93Z25;GB:Q9FMK5); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G67750.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to pectate lyase [Malus x domestica] (GB:AAQ84042.1); similar to Pectate lyase [Prunus mume] (GB:BAE48664.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -2.5807463790367 -26.1009448488231 1.82559674156905e-09 4.69015368119963e-06 13.8499106117544 18.6187940071891 -2.5807463790367 0.105518541229286 AT5G39660_at 5.2887696169259 5.64279984270544 5.04116610507743 5.01710260103566 4.97940777367126 5.16316579514959 6.49752040478903 6.38071614453835 5.67277835059371 5.83226882245388 4.58923589349658 4.81830360404301 4.88862656854353 4.6931971307449 4.3269530071534 5.97372898216654 6.09097367843038 4.66299495189965 6.65506301289503 0.224317494886122 0.218624690321897 0.230652293286985 0.221444581118399 0.218624690321897 0.222649717464235 0.221941751246235 0.224872211446487 0.226013802794359 0.226235598645635 0.222382930591335 0.220095690982160 0.218624690321897 0.231633082219583 0.252490530544579 0.224796912061707 0.226775936592974 0.232479009652009 0.230855190718069 5 5 + 15897402 15897902 15897635.818 15895927 15898272 + gene protein_coding_gene TRUE TRUE AT5G39660.1|AT5G39660.2 CDF2 (CYCLING DOF FACTOR 2); DNA binding / protein binding / transcription factor|CDF2 (CYCLING DOF FACTOR 2); DNA binding / transcription factor Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. Identical to Dof zinc finger protein DOF5.2 (AtDOF5.2) (DOF5.2) [Arabidopsis Thaliana] (GB:Q93ZL5;GB:Q9FK95); similar to CDF3 (CYCLING DOF FACTOR 3), DNA binding / protein binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G47500.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE80370.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -1.96020508041890 -23.4268543628171 4.55512338735139e-09 8.86233588869847e-06 13.6612955416625 11.0307669300069 -1.96020508041890 0.0720470230311884 AT5G17300_at 6.48024879295034 6.65838999914178 7.18141528139174 7.49329373043185 7.31781041159439 7.66000262537167 9.25010248234447 9.27432818110532 7.60659445767084 7.97458976507949 4.38179330020048 5.57347916841819 7.54050614360823 6.39369559449431 3.73930943300037 8.63387436547872 8.63369465656072 5.13266420629994 8.22155371698386 0.187417217565256 0.180765812205752 0.178212707582523 0.174005862491960 0.174966035925148 0.174855544885429 0.178251481389208 0.174107358080112 0.181178316789113 0.177820800014509 0.18092338054579 0.173955469668217 0.173042170234764 0.179817195143029 0.186341177166773 0.169418433308285 0.175986652289019 0.180449777406912 0.169418433308285 5 5 - 5690439 5690837 5690682.182 5690229 5692904 - gene protein_coding_gene TRUE TRUE AT5G17300.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G37260.1); similar to putative At5g37260 [Lycopersicon peruvianum] (GB:AAX44338.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -2.08887302098912 -23.3149279318348 4.74316991587794e-09 8.86233588869847e-06 13.6521770866627 14.7583854822510 -2.08887302098912 0.0859517154552735 AT5G35480_at 5.85327884083931 6.44711261453883 5.64279153224221 5.95574256799317 5.77570082581518 5.50130292165897 7.30948285282196 7.51839374546727 7.55926523016466 7.66084500747753 6.07524221775498 5.365152798699 6.15403849846949 6.38118825131148 5.32904294515821 6.96377595149048 6.95034761559789 5.51682036843883 7.76179222675916 0.218856414748341 0.220239503289623 0.221828908480527 0.219500299884553 0.216796718793012 0.230346129797386 0.223526427501921 0.225880713074979 0.230676741602957 0.21993181161254 0.222194908775342 0.218368523845286 0.223452390242784 0.223519639371952 0.253586724280581 0.224635290790211 0.226788619443430 0.221252199812188 0.228675667952374 5 5 - 13706674 13706759 13706709.455 13706434 13706788 - gene protein_coding_gene TRUE TRUE AT5G35480.1 unknown protein -2.36191265260100 -21.0907253800836 1.10480976081533e-08 1.41918733987764e-05 13.4452853710237 13.1267683555049 -2.36191265260100 0.130597794545355 AT5G20630_at 9.9036879242457 10.3426610195688 0.407355801422373 0.723917738182595 5.94654693703036 6.0475477194696 4.81307502322885 5.17517827208363 2.84303748893312 3.36779993732706 6.78257791311751 9.33452829981518 4.61892161521082 5.19817220858041 8.63953209617795 5.93248413735878 1.06434597893714 3.82672787652604 4.97471013561626 0.333479639808602 0.334608645616651 0.362339586591491 0.353927233213402 0.324874285250903 0.330723707774979 0.32511249357824 0.324913016925434 0.329576858898155 0.329251225668622 0.331264208720494 0.326791011446421 0.328499396817854 0.326852318704930 0.328313212515424 0.329631242715099 0.343273977586879 0.330431512551259 0.330316598602932 5 5 - 6975357 6975829 6975601.545 6975106 6975995 - gene protein_coding_gene TRUE TRUE AT5G20630.1 GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P94028); similar to GLP1 (GERMIN-LIKE PROTEIN 1), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT1G72610.1); similar to Germin-like protein 1 precursor (GB:P45854); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -2.10104707784065 -20.3596147518110 1.48668589096583e-08 1.79739076912218e-05 13.364883860567 10.1215848642411 -2.10104707784065 0.114036163965737 AT5G59680_at 6.67667358801139 7.00594581253468 7.0889191994146 7.0126565880357 6.37021312287382 6.33255946942066 3.74137630467607 3.587811514251 7.26217795004544 5.47595267247385 3.13459190163108 3.2731013136045 3.86636703653991 4.85306622189624 2.52622024395079 4.65085398322015 4.30457749355056 4.30197887724331 6.66896318819239 0.265825376238627 0.261911304251387 0.261598534336150 0.265731596549564 0.262542758298370 0.262448143510703 0.26745926427457 0.270314645715599 0.270343690345597 0.261598534336150 0.269546561980679 0.261598534336150 0.274898973775040 0.265251372125593 0.273369305392957 0.261598534336150 0.269554206617618 0.267367971314486 0.268154284204588 5 5 + 24067464 24067971 24067779.455 24064018 24068027 + gene protein_coding_gene TRUE TRUE AT5G59680.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59650.1); similar to MEE39 (maternal effect embryo arrest 39), kinase [Arabidopsis thaliana] (TAIR:AT3G46330.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59670.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.56905678690055 -19.4251286064151 2.2063216574082e-08 2.26731071715427e-05 13.2513246693394 11.1434574019981 -1.56905678690055 0.0645742356116711 AT5G02540_at 3.99054990541454 4.10529789218698 2.16540819686940 2.06757015715114 2.97283122797674 2.60832233290088 1.80729288552186 2.17725541626586 9.77706586470333 5.51663995872347 8.95434301597845 8.89190927141359 5.13886927878576 4.63734191131853 10.3345384199724 5.57207445785845 2.64810509023586 5.99604965823432 7.39391135275471 0.275613394819399 0.268633899156296 0.272043914907454 0.272517642244762 0.265266923522676 0.282635748829346 0.277762696222271 0.279281196756958 0.277644426284098 0.280571587274704 0.270809633479375 0.266124327562356 0.26476117355054 0.268414472684544 0.268230007834855 0.266404860546767 0.281846041212879 0.276394439166019 0.270740552904214 5 0|5 /|+ 569764 570688 570231 568522 570918 + gene protein_coding_gene TRUE TRUE AT5G02540.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G37540.1); similar to putative pod-specific dehydrogenase SAC25 [Brassica napus] (GB:CAB58175.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -1.71570468360702 -18.4288390146702 3.43087055452096e-08 2.93809138214096e-05 13.1149643148529 9.77891247513684 -1.71570468360702 0.0935901623425344 AT5G01240_at 7.1430381974327 7.16456227208895 5.63668099666322 5.70359013495248 7.11118736256784 6.94381094562896 7.00738228211767 7.05061203817204 8.40180575151898 7.83965474390029 8.64725600057713 8.960866302693 8.612075110508 8.33538100599061 8.412694399731 8.37400169259636 7.49257486394716 8.03244032599191 8.2703326191843 0.181094028154693 0.181349664244511 0.214497240555169 0.227041433798241 0.176531485341241 0.193325029127391 0.181689543966364 0.180381583144622 0.181641436073405 0.174659499515934 0.175660969816336 0.181612198067594 0.183052823190815 0.179954860459180 0.174446260543287 0.179468333002057 0.186971318638232 0.183420695545713 0.180822053903205 5 5|0 +|/ 100643 101431 101040.1 97893 101834 + gene protein_coding_gene TRUE TRUE AT5G01240.1|AT5G01240.2 amino acid permease, putative Identical to Auxin transporter-like protein 1 (AUX1-like protein 1) (LAX1) [Arabidopsis Thaliana] (GB:Q9LFB2;GB:Q9SMW2); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to AUX1 (AUXIN RESISTANT 1), amino acid permease/ transporter [Arabidopsis thaliana] (TAIR:AT2G38120.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT1G77690.1); similar to Auxin transporter-like protein 4 (AUX1-like protein 4) (MtLAX4) (GB:Q8L884); similar to AUX1-like auxin influx carrier protein [Pisum sativum] (GB:BAC98948.1); similar to Auxin transporter-like protein 2 (AUX1-like protein 2) (MtLAX2) (GB:Q9FEL7); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -1.26041498531283 -17.7111260315165 4.78376300810944e-08 3.78153841579367e-05 13.0055034381152 14.9846124875141 -1.26041498531283 0.0322939641516316 AT5G08610_at 4.99994090926401 5.15486446809446 4.84593079018825 5.11455420866635 4.48001318937538 4.65907802359099 4.99587458527656 4.77635203500589 4.57959676731587 4.77239344447034 3.45333628382292 4.24367972401607 3.7659652347112 3.76538270369615 5.21147564346173 4.92075779667175 4.85244585318829 3.92958426988902 5.667366876323 0.251703547035268 0.252210019346764 0.248139327524940 0.250758264798586 0.256983880352667 0.246537754182573 0.253638533220855 0.251550303787341 0.251116509365411 0.249972806587584 0.255561150758653 0.253342563055305 0.246537754182573 0.249862872487566 0.259535680678733 0.246537754182573 0.250791750259808 0.260216126793756 0.247302776245258 5 5 + 2793171 2793991 2793613.182 2790296 2794216 + gene protein_coding_gene TRUE TRUE AT5G08610.1 DEAD box RNA helicase (RH26) Identical to DEAD-box ATP-dependent RNA helicase 26 (EC 3.6.1.-) (RH26) [Arabidopsis Thaliana] (GB:Q9FNM7;GB:Q9ZRZ9); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G63630.1); similar to DEAD box RNA helicase (RH25) [Arabidopsis thaliana] (TAIR:AT5G08620.1); similar to myc-regulated DEAD/H box 18 RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61516.1); similar to DEAD-box ATP-dependent RNA helicase 31 (GB:Q9FFQ1); similar to putative RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD46119.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -1.36415421944901 -16.2532782854991 9.79431654866439e-08 5.92062326729735e-05 12.7487814249849 9.51546642687534 -1.36415421944901 0.0726858872725922 AT5G39030_at 7.28172105822626 7.56214292410156 7.79184219965597 7.584997097195 7.31812667132224 7.17015431821237 7.04375142629095 6.79445058058665 6.72559183055569 6.56522058721528 5.1609489482339 5.26689694291679 6.19741774266431 5.85865651659514 4.90980490716336 6.13059978697142 6.3821404384251 5.4649683804782 6.73512842171009 0.223281803277137 0.209017960366301 0.223315847423014 0.218794733695761 0.215637939940856 0.223061883970817 0.215039719465313 0.212101667010599 0.21466848685205 0.21083575237395 0.220742615934672 0.220963390644712 0.211136389248487 0.213160723770515 0.213181125803175 0.215524621260460 0.227512599604645 0.213918494718261 0.214698872584101 5 5 + 15639186 15639683 15639512.636 15637296 15639716 + gene protein_coding_gene TRUE TRUE AT5G39030.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39020.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38990.1); similar to receptor serine/threonine kinase PR5K (GB:AAC49208.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.39668554638795 -16.1808129346725 1.01653831348601e-07 5.96936199171364e-05 12.7346616984546 13.4917696949946 -1.39668554638795 0.078443227789016 AT5G35490_at 8.98816722096307 9.26501648423753 8.14980911892333 8.34447194685779 8.63737502328115 7.64432186800096 10.9244771286917 10.7741917143845 9.7523982697928 10.8413058140904 8.84416968175436 8.80812561382695 8.54321364498947 9.74255999344598 8.60170719419791 10.2718293653327 9.74322763387978 8.32687730653887 10.7814800622600 0.217899176984520 0.217142729508093 0.231576738252176 0.226521576985248 0.215292660425633 0.235643909566319 0.22321682106154 0.219911397346615 0.218929404403662 0.221155638593771 0.217228278292611 0.215292660425633 0.219637562199341 0.215292660425633 0.225709852791177 0.229474420555654 0.22636148104646 0.232547156908313 0.220912171493480 5 5 + 13707468 13707637 13707563.333 13707047 13707778 + gene protein_coding_gene TRUE TRUE AT5G35490.1 unknown protein -2.29391057741562 -16.1060652164020 1.05646135017387e-07 6.03147206942494e-05 12.7199500316612 18.8752830729809 -2.29391057741562 0.183411771835614 AT5G15350_at 7.12571565740982 7.45848535536349 5.83600327209701 5.73483281953861 7.64075278735532 7.72848868132364 9.26693799411886 9.06237759557473 10.0733195520635 9.1698835810137 10.9449597478275 10.4625434314095 10.0947419246441 10.3275736745262 10.5247406715828 9.40365622094505 8.78635432523182 10.1256290748918 9.42861005473404 0.150127589649918 0.142773499528878 0.180655032825247 0.181401451394415 0.144750171387885 0.148694607273865 0.132902171410471 0.132710095188729 0.133776852756239 0.132710095188729 0.132984326512091 0.133380412584265 0.135497351205011 0.135471738194291 0.136692540862513 0.134186942982404 0.137920010984882 0.134738177664380 0.137415539537809 5 5|0 -|/ 4985226 4986125 4985682 4984962 4986242 - gene protein_coding_gene TRUE TRUE AT5G15350.1 plastocyanin-like domain-containing protein Identical to Lamin-like protein precursor [Arabidopsis Thaliana] (GB:Q39131;GB:Q8H7E7); similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G12880.1); similar to lamin [Brassica oleracea] (GB:CAA65749.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -1.30503800861832 -15.6408048183180 1.34790835871227e-07 7.29036006529728e-05 12.6248978690844 17.3022222435907 -1.30503800861832 0.0714599843413793 AT5G60910_at 5.72907071132522 6.14432274899845 6.90136741377368 6.63497887657002 5.99250712886754 5.83340901241845 6.68326768738045 6.81582144708811 6.04621118137526 3.40136760553297 2.93568696328534 2.81996508878401 2.77259276910807 3.61587399674500 2.81834683135792 6.18708144652701 3.73212140358407 3.16057650784263 3.84987135251771 0.327660001083086 0.331180444945288 0.331203985464849 0.327889752702991 0.326759658014253 0.329373931508004 0.326759658014253 0.328985221283980 0.333646351878508 0.326759658014253 0.327973950757255 0.333427040012751 0.334166008013282 0.326759658014253 0.335905153377764 0.327953124964722 0.331030912369449 0.338272362644492 0.334421375556487 5 5|0 -|/ 24519963 24523058 24520870 24519708 24523369 - gene protein_coding_gene TRUE TRUE AT5G60910.1|AT5G60910.2 AGL8 (AGAMOUS-LIKE 8); transcription factor|AGL8 (AGAMOUS-LIKE 8) MADS box gene negatively regulated by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar to AP1 (APETALA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69120.1); similar to MADS-box protein FUL-d [Brassica oleracea var. botrytis] (GB:CAD47852.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)|Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar to AP1 (APETALA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69120.1); similar to MADS-box protein FUL-d [Brassica oleracea var. botrytis] (GB:CAD47852.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -1.41196753647026 -15.2427264511647 1.66940583571229e-07 8.26089311598757e-05 12.5385471446654 10.3107251311592 -1.41196753647026 0.0925931105175184 AT5G51720_at 8.7596131320189 8.47160067678543 8.62503796763517 8.44617372188194 6.46084389473713 6.9110176258745 10.1937910203943 10.1534995906229 8.15873589593262 8.94743953311399 9.31273136732892 8.80740888880496 8.89988928491524 8.89174757531267 8.9978567071713 8.50918235501442 8.87793395902873 10.2324057610664 8.45668027601447 0.132314251595830 0.126253178630881 0.135100051606868 0.128713649283079 0.154814561335894 0.141674370818784 0.135613058784709 0.13466419383185 0.141332551539796 0.134366228783191 0.133785261851728 0.128111500652130 0.125900952683713 0.127244344416224 0.128483536858867 0.128414897737029 0.135578973775292 0.127790808868190 0.131167958233497 5 5|0 +|/ 21026871 21027412 21027056 21026818 21027571 + gene protein_coding_gene TRUE TRUE AT5G51720.1 similar to zinc finger, CDGSH-type domain 2 [Homo sapiens] (GB:NP_001008389.1); similar to Os07g0467200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059590.1); similar to hypothetical protein [Homo sapiens] (GB:CAD97935.1); contains InterPro domain Zinc finger, CDGSH-type; (InterPro:IPR006622) -1.44134599247717 -15.1583003939311 1.74806122682852e-07 8.26089311598757e-05 12.5196050168475 17.2962453982525 -1.44134599247717 0.0977756370023 AT5G14210_at 5.21083398882766 5.2858449980783 4.53266398526018 4.36410554789074 5.14586216521930 4.99219821696897 5.14896372889717 5.14503533685568 5.87340365466549 5.20834118679342 6.01200131710743 6.47810470152178 5.53340052781898 5.89603462784974 6.21690504210977 5.9768172358981 5.34917751287886 5.39222403040752 6.01455951886851 0.187357560446058 0.185762248235925 0.184099313886424 0.191048024119997 0.185052467748661 0.174287048284034 0.185330711340008 0.190023080642037 0.182368508229327 0.186369419067891 0.17397325687018 0.182462119971132 0.181393077665040 0.184375401743672 0.179631896552184 0.172468389303950 0.180232456882405 0.172468389303950 0.187740503373960 5 5|0 -|/ 4578584 4579168 4578849.5 4578380 4581376 - gene protein_coding_gene TRUE TRUE AT5G14210.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G03770.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81107.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78913.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -1.11198994954208 -15.154871085634 1.75134217450746e-07 8.26089311598757e-05 12.5188308253226 10.7559891182788 -1.11198994954208 0.0415571379715094 AT5G48490_at 9.74290971608475 10.0807260762736 3.88375378792043 4.17242455417002 9.45154697526843 9.35855037886377 8.48940246177052 8.95715146790293 10.8966861364678 9.55351809307022 12.2935420441561 13.0187857566501 11.1114687365832 11.7155214038842 12.1866005716923 10.9301464394798 7.3417695667278 10.4889334573429 10.0655577990335 0.144010862634514 0.14272713350109 0.215540004273316 0.180651513364776 0.141602901467269 0.140409689602734 0.143332065215891 0.152158267426024 0.147546203774125 0.149088713931797 0.146370546948932 0.143256800823238 0.140409689602734 0.145313959846192 0.143430299147594 0.140409689602734 0.179907828691372 0.140409689602734 0.144754856145070 5 5 - 19665170 19665373 19665273.273 19665061 19665507 - gene protein_coding_gene TRUE TRUE AT5G48490.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1), lipid binding [Arabidopsis thaliana] (TAIR:AT5G48485.1); similar to Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor [Medicago truncatula] (GB:ABE79318.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.55248550425568 -15.1370429670106 1.76850980139457e-07 8.26089311598757e-05 12.5147999473594 18.6709415139093 -1.55248550425568 0.112802998769560 AT5G05860_at 6.39193583641671 6.1568021308104 5.24081598491363 5.230969950124 6.57603010794446 6.79562920445755 7.08006009250544 7.31499704211264 7.47707112315674 7.81756318522323 8.2759445787805 8.90253824500726 7.4319722000348 7.9590740201445 8.96362946321374 7.80280027658376 6.82636844814953 8.19899204325663 7.69401080542347 0.183771774539754 0.187524848785511 0.194169239406481 0.187806676203890 0.188189781261101 0.188082344144226 0.186071675023673 0.19383911615119 0.188293714382517 0.195431681010416 0.190873602006159 0.188547918272275 0.186177044960171 0.185363415166011 0.185872664997737 0.182830243915368 0.188281061150881 0.182737461372032 0.191643111232194 5 5 + 1766836 1767294 1766981.273 1765508 1767456 + gene protein_coding_gene TRUE TRUE AT5G05860.1 UGT76C2 (UDP-glucosyl transferase 76C2); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Identical to Cytokinin-N-glucosyltransferase 2 (EC 2.4.1.-) (UGT76C2) [Arabidopsis Thaliana] (GB:Q9FIA0); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G05880.1); similar to UDP-glycosyltransferase 76G1 [Stevia rebaudiana] (GB:AAR06912.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.22247190206846 -14.8266534600440 2.09952757327203e-07 9.18112569437932e-05 12.4429640739760 14.2024283506593 -1.22247190206846 0.0689626499156896 AT5G19120_at 9.52682734942429 9.75194031274616 7.93325312131507 8.22222019959142 10.2425971261546 10.1724853645517 8.07444009215858 8.3870300125371 8.6172216578227 8.53384410453304 7.31974043533771 8.44189892612415 7.55320709763399 7.8609279461488 6.95244744641038 7.01835698931721 7.14853280789276 7.67464491052806 8.81388707321469 0.187761425255378 0.186126244050749 0.19801538131366 0.189885778068776 0.18765543101848 0.183690724758310 0.188840444572317 0.195271804905927 0.199716823678483 0.188011466940697 0.189138797284067 0.185023988132217 0.200609776917350 0.191928939616916 0.191234318701365 0.184276071708665 0.194498850558879 0.193866095246591 0.183690724758310 5 5 + 6415165 6415719 6415424.455 6414490 6415909 + gene protein_coding_gene TRUE TRUE AT5G19120.1 pepsin A similar to extracellular dermal glycoprotein, putative / EDGP, putative [Arabidopsis thaliana] (TAIR:AT1G03220.1); similar to EDGP precursor [Daucus carota] (GB:BAA03413.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -1.30973720887604 -14.7460516442807 2.19638944779729e-07 9.4045998032409e-05 12.4237845784648 17.1144511215337 -1.30973720887604 0.0842130894701759 AT5G03760_at 3.67123792001151 4.421074831974 2.85360283819649 2.79457142348735 3.03868545538797 2.88691112415158 8.18555722853938 8.55899421304475 6.38160771793298 7.5655248050301 9.7835006941069 10.3946073454907 9.22086795431948 9.08076595528395 9.66701813873987 9.14432034526819 7.6950320438235 9.2506880030626 7.92863258993774 0.294784257523066 0.301833316074464 0.30848553801728 0.298669656367809 0.300466208316613 0.300272000501344 0.294085930474119 0.292063203600909 0.32684178511242 0.295567182786223 0.288391232402187 0.284657860218143 0.283706423880462 0.30953196073761 0.285008164974166 0.286136402978946 0.302272058874482 0.29593455831818 0.290503708628734 5 5 - 985937 986559 986288.818 985674 990548 - gene protein_coding_gene TRUE TRUE AT5G03760.1 ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root. similar to ATCSLA02 (Cellulose synthase-like A2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G22740.1); similar to ATCSLA03 (Cellulose synthase-like A3), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G23480.2); similar to ATCSLA07 (CELLULOSE SYNTHASE LIKE), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G35650.1); similar to glycosyltransferase 1 [Ipomoea trifida] (GB:AAQ62570.1); similar to Glycosyl transferase, family 2 [Medicago truncatula] (GB:ABE81491.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.71015221565976 -14.0760317639547 3.22479660328809e-07 0.000120052901251445 12.2554301273690 12.8370902615052 -1.71015221565976 0.147678682485152 AT5G52910_at 5.05413932662967 4.73202112319401 5.43719379142498 5.38517863296554 5.72593868938358 5.92641376966303 2.98038950767658 3.06898112523736 8.30371350355472 5.3570227630694 5.2153204200787 4.26709236463698 3.50430319037701 3.98758874063529 5.2563375712524 3.60110557164063 3.27680111100368 4.18862555174123 5.15812493921474 0.245530340688785 0.247613234246542 0.256848982174593 0.246894005322019 0.256003709066194 0.254432012418757 0.248795506252866 0.251627885844824 0.277060663450231 0.250815545376043 0.244392497416143 0.245642359960023 0.251781084724626 0.247030470708733 0.249447336090201 0.250400042783887 0.251860774086279 0.252563249329254 0.245101073557375 5 5 - 21475045 21475712 21475344.818 21474853 21480385 - gene protein_coding_gene TRUE TRUE AT5G52910.1 ATIM (TIMELESS) homolog of Drosophila timeless similar to Timeless protein; Timeless C-terminal [Medicago truncatula] (GB:ABE87103.1); similar to Os05g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054915.1); contains InterPro domain Timeless protein; (InterPro:IPR006906); contains InterPro domain Timeless C-terminal; (InterPro:IPR007725) -1.15344443119617 -14.0517332062720 3.27105975979755e-07 0.000120052901251445 12.2490114808837 10.0063322709970 -1.15344443119617 0.0680226894477464 AT5G36950_at 4.02349321314657 4.31627752798877 3.84513179843289 4.10880343582492 4.42369780704258 4.16306665750342 6.58922932873901 5.92688130561839 4.21832146583355 5.21340279193657 4.17881445187838 4.09833585850055 3.71359419771996 4.04076584135646 5.10339802200575 4.92264382127353 4.98946266759326 4.4005081817861 5.18103533394035 0.266169876949817 0.26547299171954 0.269906752338554 0.268843142475929 0.272272111465763 0.271457751549880 0.276578719513275 0.286605785624625 0.274795200261539 0.277337798933946 0.277379064912165 0.268294222137427 0.288189822947358 0.268817740122186 0.269076323088990 0.26547299171954 0.272553029447221 0.269667391459577 0.271207122323767 5 0|5 /|+ 14614489 14615414 14614889 14612211 14615579 + gene protein_coding_gene TRUE TRUE AT5G36950.1 DEGP10 (DEGP PROTEASE 10); serine-type peptidase/ trypsin Encodes a putative DegP protease. Identical to Protease Do-like 10, mitochondrial precursor (EC 3.4.21.-) (DEGP10) [Arabidopsis Thaliana] (GB:Q9FIV6); similar to DEGP3 (DEGP PROTEASE 3), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT1G65630.1); similar to Os05g0417100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055560.1); similar to Serine protease (ISS) [Ostreococcus tauri] (GB:CAL53952.1); similar to Os02g0742500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048089.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -1.63486078646920 -13.9002809224849 3.57660517350796e-07 0.000126740441396022 12.2084849178557 9.32550275637094 -1.63486078646920 0.140790247382501 AT5G62670_at 8.17024585740149 8.41213412278105 7.47015294679296 7.67331368668251 7.21391957027526 7.53383937363818 9.1771687265316 9.51839209557826 9.70467806397326 9.14402633244272 9.97210749655632 10.0548883762208 9.4379933480556 9.32248516842 10.057817556849 9.69078572650673 8.72893100575322 9.99884847145398 9.06722208465252 0.184402412915862 0.173303180662755 0.198153458046134 0.193589682140932 0.200026274491789 0.201756170473259 0.177137429751007 0.176710130918005 0.181888055991629 0.182057021876396 0.17761824697769 0.177182965531727 0.173311938110023 0.176963677494203 0.178125273341842 0.172710838220873 0.180640784910452 0.175146148361381 0.174335041455003 5 5|0 +|/ 25181248 25182092 25181674.2 25176456 25182435 + gene protein_coding_gene TRUE TRUE AT5G62670.1 AHA11 (ARABIDOPSIS H(+)-ATPASE 11); ATPase Identical to ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump 11) (AHA11) [Arabidopsis Thaliana] (GB:Q9LV11); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to AHA4 (Arabidopsis H(+)-ATPase 4), ATPase [Arabidopsis thaliana] (TAIR:AT3G47950.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to plasma membrane H+-ATPase [Juglans re (GB:AAQ55291.1); similar to plasma membrane H+ ATPase [Prunus persica] (GB:CAB69824.1); similar to H+-translocating ATPase (GB:AAA34052.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -1.29644298675340 -13.6413225943006 4.17537368799148e-07 0.000136106208401679 12.1370631886308 17.6277912828351 -1.29644298675340 0.0976749539324803 AT5G48030_at 6.81706543905022 6.91041128151434 7.64450319611733 7.6301948081106 6.7690489242214 6.7917271927265 7.5722591085727 7.5144250792605 5.54457432187633 6.74547874117602 5.65989110060266 6.16652373613232 6.95835429222269 6.48221381202792 5.87334394038364 7.27705073912418 7.40352602162976 6.63033517785137 6.76423110791979 0.193962881878144 0.193303250623552 0.197170966214934 0.193303250623552 0.199569384565156 0.193303250623552 0.199877428484587 0.193788300483954 0.230884022947627 0.193303250623552 0.206279819117155 0.209121188946993 0.193303250623552 0.203408585057360 0.203205627519438 0.193635109760222 0.206094373070769 0.200324031747487 0.198239658233489 5 0|5 /|- 19483531 19485111 19484425.714 19483237 19487128 - gene protein_coding_gene TRUE TRUE AT5G48030.1 GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development. similar to ATJ1 (Arabidopsis thaliana DnaJ homologue 1), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G28210.2); similar to DnaJ central re (GB:ABE85065.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.934796051279847 -13.5546176924734 4.40013905184104e-07 0.000136106208401679 12.1125314775606 13.6601208334405 -0.934796051279847 0.0195614971413562 AT5G54190_at 5.66675930335509 6.42182032458246 3.5639597128566 3.70759202696079 3.89269653224076 3.88921869996067 4.10143714332102 4.10946720699072 6.91648774162338 4.64461889132372 5.61163447026769 6.08866940642312 4.47750973680712 5.43732930263683 7.0954734248138 5.27463983945663 3.30444979672346 4.77444174622987 4.03130783627019 0.290072946305841 0.301338175948063 0.29343141997164 0.293216087885253 0.272486003309938 0.287080087976894 0.272486003309938 0.279652824341317 0.30454928397675 0.272953346739682 0.27745409034751 0.288863466738708 0.272610188271259 0.275841727361819 0.286018593695894 0.272486003309938 0.288423062438466 0.272486003309938 0.277712372643402 5 5 - 22008493 22009158 22008817.818 22008138 22010038 - gene protein_coding_gene TRUE TRUE AT5G54190.1|AT5G54190.2 PORA (Protochlorophyllide reductase A); oxidoreductase/ protochlorophyllide reductase light-dependent NADPH:protochlorophyllide oxidoreductase A Identical to Protochlorophyllide reductase A, chloroplast precursor (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) (PORA) [Arabidopsis Thaliana] (GB:Q42536;GB:Q9FK22); similar to PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT4G27440.2); similar to NADPH:protochlorophyllide oxidoreductase A (GB:AAC49043.1); similar to Protochlorophyllide reductase, chloroplast precursor (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (GB:Q01289); similar to protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea (GB:S20941); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Light-dependent protochlorophyllide reductase; (InterPro:IPR005979); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|Identical to Protochlorophyllide reductase A, chloroplast precursor (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) (PORA) [Arabidopsis Thaliana] (GB:Q42536;GB:Q9FK22); similar to PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT4G27440.2); similar to NADPH:protochlorophyllide oxidoreductase A (GB:AAC49043.1); contains InterPro domain Light-dependent protochlorophyllide reductase; (InterPro:IPR005979) -1.52744304778079 -13.4801191671676 4.60403878842287e-07 0.000137139351531872 12.0911993660286 9.64686384636297 -1.52744304778079 0.133018595912975 AT5G57780_at 4.49172613284193 4.55724420009674 2.72822123650317 2.82940033985597 4.53734347042549 4.98351777722646 5.40877854422785 5.41314564609055 6.44889177392261 5.81906237595599 7.635929517181 7.81938472962375 7.38559215155419 7.50381308634549 7.7582356410487 7.6292862336697 5.99527349083436 7.15277553745609 7.25089384308823 0.282460461216231 0.266157075165097 0.287110481477224 0.290338323557142 0.262794368851567 0.286221356323615 0.266724856903714 0.277047859866144 0.264485759649922 0.273804034241161 0.271068034924201 0.269219775260021 0.266458284111294 0.262794368851567 0.272817394042124 0.262794368851567 0.271683211450145 0.267490368105863 0.269562735701468 5 5 - 23422757 23423158 23422980.091 23422550 23423577 - gene protein_coding_gene TRUE TRUE AT5G57780.1 similar to transcription factor [Arabidopsis thaliana] (TAIR:AT4G30410.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19120.1); similar to Os02g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046079.1); similar to Os06g0653200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058239.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) -1.17034614573563 -13.4560854430298 4.67204260943911e-07 0.000137176893415913 12.0842668405304 11.3018316498017 -1.17034614573563 0.0799842877601108 AT5G10350_at 7.53921668620066 7.38177996416538 7.17127439945732 7.01162846409851 7.54878169479986 7.15318883673184 7.53391103365986 7.72750736385223 7.46237205754034 7.56101922420906 7.83866178159503 7.3975754533187 7.14880792779232 7.78908449558724 7.6066082914445 7.31735973441732 7.60332955747315 7.23286020015734 7.55847563500364 0.159788455261121 0.150094521798833 0.156814775556023 0.159071997621005 0.149786615795835 0.153320105857862 0.156231220444675 0.149227846207234 0.166541248897468 0.152638451345672 0.152734127959165 0.155563672420673 0.150248434568013 0.153989859289773 0.155720103377231 0.150016397737371 0.152381684661961 0.149949403019705 0.153035993179305 5 5|0 -|/ 3255680 3257667 3256572.857 3255435 3257808 - gene protein_coding_gene TRUE TRUE AT5G10350.1|AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G65260.1); similar to Os02g0757900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048174.1); similar to putative poly(A) binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17091.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G65260.1); similar to Os02g0757900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048174.1); similar to putative poly(A) binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17091.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -1.16880073570349 -13.0733504346926 5.92031733617319e-07 0.000168999219182908 11.9704392287020 14.8929485066078 -1.16880073570349 0.0855258479631914 AT5G22640_at 7.9778073908681 8.16318940472732 7.8149722838586 7.80840999448545 8.4408003593186 8.15321559543815 8.58079760986674 8.54495768344004 8.72292540218797 8.89230987900958 8.62459981141822 9.21624905363939 8.35205716152955 8.45507277263038 9.33021896280932 9.02675915487202 8.39417030752084 8.83315516381532 9.0704004484475 0.146284666570767 0.151556214071402 0.15861927635278 0.158681855396044 0.154672867902876 0.155806851427586 0.155048881918359 0.150258876493826 0.171802083105953 0.145403761965824 0.148821265712612 0.148555867957791 0.156146243512371 0.168739355713645 0.154783836231552 0.143903062161242 0.160762100949044 0.154268761137009 0.147335819738107 5 0|5 /|+ 7533325 7533612 7533484.6 7529371 7533787 + gene protein_coding_gene TRUE TRUE AT5G22640.1 EMB1211 (EMBRYO DEFECTIVE 1211) similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to Glutamic acid-rich protein precursor (GB:P13816); contains InterPro domain MORN motif; (InterPro:IPR003409) -1.02939797861917 -13.0385484447289 6.05107067494511e-07 0.000170365469225317 11.9597603390318 17.0226423944559 -1.02939797861917 0.0595466617547966 AT5G61330_at 6.6335669787039 6.45007046153455 6.2084601768517 5.75946000699203 6.44647506682058 6.11748084047843 6.30704406615526 6.73518117669918 6.87713205083007 7.06841571448202 6.85943614711112 7.58498970240953 6.75173065629702 7.03085782585885 7.03051187477469 6.83254314308539 5.81560986683782 6.68181902465483 7.34881007972982 0.206447229235825 0.206140257915293 0.219542755367614 0.217611389176505 0.201820271463896 0.233987422229987 0.224712957316335 0.224433466840440 0.220185585329165 0.206901273537685 0.20839292396006 0.202974605999433 0.223303397983277 0.207477059120865 0.219184757195765 0.204370180351186 0.209613383144679 0.224585413932414 0.220122710240256 5 5|0 -|/ 24674536 24675502 24674942.625 24674374 24678247 - gene protein_coding_gene TRUE TRUE AT5G61330.1 rRNA processing protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to hypothetical protein DDBDRAFT_0201701 [Dictyostelium discoideum AX4] (GB:XP_645916.1); similar to Os01g0526200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043227.1); contains InterPro domain TRAUB; (InterPro:IPR012617) -1.38146876889149 -12.6404479542660 7.79886755070391e-07 0.00020302954533681 11.8335099365254 13.2929956276841 -1.38146876889149 0.125606063803897 AT5G56860_at 5.67631057908685 5.62588410550391 6.42915134633016 5.86364811965475 6.1287679854618 5.58044256097614 7.58452485926914 7.46157091804421 6.99444486858109 6.71474696691361 6.84483041136472 6.82381212509095 6.59310253293986 6.71000818106998 6.27259463797428 7.42926372112855 6.61140980453612 6.55940591620322 7.15678778224814 0.211369051179571 0.206862317674191 0.213491140271285 0.232741135849205 0.209865546063057 0.219735034421289 0.210509908002922 0.216040475331689 0.211911493603452 0.203930905778215 0.207822793875796 0.204547033660413 0.206682014820140 0.220351109361768 0.215588614591763 0.205015151548199 0.216641499261809 0.209268748422818 0.208712625325103 5 5|0 -|/ 23006870 23007579 23007156.9 23006491 23008693 - gene protein_coding_gene TRUE TRUE AT5G56860.1 GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED); transcription factor Identical to GATA transcription factor 24 [Arabidopsis Thaliana] (GB:Q5HZ36;GB:Q8VZC1;GB:Q9LV39); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT4G26150.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87039.1); similar to Os06g0571800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057917.1); similar to Os02g0220400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046316.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -1.45160619998152 -12.4931427711639 8.58240116783535e-07 0.000220491083897635 11.7848172589301 13.1367275370589 -1.45160619998152 0.138239719246587 AT5G15600_at 3.03770774870022 3.37010716670629 3.41303229865958 3.45808778279425 2.67142109642859 3.06564498205434 5.23843067451782 5.36646908589339 5.8798648572396 5.62815830240759 6.54784067167683 6.57830239410523 5.79144118941678 6.55311091760533 6.66074624469553 6.62954407365932 5.44879433310676 6.82350767532776 5.76878806716734 0.300201430935912 0.284156640653325 0.291225143126722 0.290671027203841 0.285778030028695 0.297446298884617 0.273844023384541 0.273139288808242 0.276919401037526 0.273139288808242 0.273139288808242 0.278215855019603 0.273902271210327 0.27349803757526 0.273139288808242 0.275712440155905 0.278081527929335 0.273139288808242 0.273139288808242 5 5|0 +|/ 5078419 5078837 5078653.6 5078203 5079094 + gene protein_coding_gene TRUE TRUE AT5G15600.1 SP1L4 (SPIRAL1-LIKE4) SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. similar to SP1L3 (SPIRAL 1-LIKE3) [Arabidopsis thaliana] (TAIR:AT3G02180.2); similar to hypothetical protein [Sorghum bicolor] (GB:AAD27575.1) -1.15189819622483 -12.4550267304044 8.79912584331529e-07 0.000223268121558517 11.7720375239206 9.77166161099633 -1.15189819622483 0.0922765499291078 AT5G53900_at 4.67030078629597 4.86062966350917 4.11151476605219 4.33091432050919 5.51994663681202 5.28775956305746 5.80511500779457 5.45340253552342 5.32848344309383 5.17311696289021 5.58278494191118 6.11586339543102 5.20310529761865 5.04268447724842 5.39415794405223 5.7027388566088 5.23106322183278 4.46439957770184 5.44114143848874 0.252192606615443 0.256839152016426 0.253488836141687 0.242731072403466 0.248745455995431 0.254858650980232 0.257992390557623 0.245444458248588 0.248392745916920 0.258473989355736 0.241791774054970 0.244195557340225 0.244478022669435 0.251720351210271 0.250924108012285 0.246424130093544 0.258245396321374 0.252126468309982 0.262428005575728 5 5 - 21898626 21899113 21898918.364 21898368 21900642 - gene protein_coding_gene TRUE TRUE AT5G53900.1|AT5G53900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15240.2); similar to Os11g0446000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067826.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93307.2); contains domain gb def: At3g15240 (PTHR13902:SF3); contains domain SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED (PTHR13902) -1.12689781135564 -12.4136282002803 9.04142796282294e-07 0.000223341335847822 11.7580721022965 10.3331214077150 -1.12689781135564 0.0885752105560707 AT5G62130_at 5.0183400174174 5.01863924720975 6.64956767961409 6.89685292171898 6.07220963658245 5.86133869723382 7.6432384772651 8.09954869034827 6.26826787460583 5.77599737882676 6.15888813495095 5.77372969922756 6.13202488881028 6.53358704997293 4.78424052130076 6.7206290926086 5.76508003982694 5.13547843835138 5.97881577366591 0.276652811872964 0.261359654486018 0.278824987652848 0.261598329775419 0.258634978853474 0.264614128677042 0.269929891224263 0.256783941678431 0.274814773451669 0.264440353278391 0.261216937370619 0.256783941678431 0.256783941678431 0.256783941678431 0.266333900525835 0.256783941678431 0.275916081001193 0.274913753679547 0.256783941678431 5 5 - 24967931 24968638 24968216 24967543 24970417 - gene protein_coding_gene TRUE TRUE AT5G62130.1 Per1-like protein-related similar to Per1-like family protein [Arabidopsis thaliana] (TAIR:AT1G16560.3); similar to Per1-like family protein [Solanum tuberosum] (GB:ABB72805.1); contains InterPro domain Per1-like; (InterPro:IPR007217) -1.14377276852018 -12.0792239030350 1.12942843525869e-06 0.000263783881165707 11.6419303158982 12.3490423753391 -1.14377276852018 0.096947014999683 AT5G24380_at 5.71317908748881 5.69711482235073 5.51267413862732 5.57561085409804 6.34961150252337 6.72699049862066 6.54486681412988 6.9112907852526 4.80600799150004 5.66393824029997 4.58522102223795 4.40270465727913 5.4879079923571 5.22288437232091 3.52648544932571 5.72267736618943 6.48257723525721 5.1218227774265 4.82991365859077 0.253057582801450 0.249595972759035 0.24886249086106 0.259993762585085 0.25474021229508 0.259359373650313 0.250525410056793 0.250338353324607 0.256968794147702 0.24886249086106 0.262581052484164 0.255180816657446 0.255389526555429 0.253573357302189 0.275688416089563 0.248956110286573 0.252971347363008 0.262348867877258 0.24886249086106 5 5 + 8325935 8326503 8326276.091 8323898 8326708 + gene protein_coding_gene TRUE TRUE AT5G24380.1 YSL2 (YELLOW STRIPE LIKE 2); oligopeptide transporter closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 similar to YSL3 (YELLOW STRIPE LIKE 3), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53550.1); similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G24120.1); similar to YSL7 (YELLOW STRIPE LIKE 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G65730.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABD04075.1); similar to putative YS1-like protein; VvYS1 [Vitis vinifera] (GB:AAT09976.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABB76763.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -1.09704849273909 -11.8953096031363 1.27946970989993e-06 0.000292186205114521 11.5754377341219 11.2134115158095 -1.09704849273909 0.0917190573800966 AT5G58770_at 6.42326648425075 6.74558001463659 8.6455333910416 8.93337686603271 7.28629839098474 6.69583097810989 10.5607063686027 10.5131346036333 9.0516797056173 9.7993157312454 8.72873176614873 8.00353495140773 9.48643104897943 9.58183260599156 6.97463750863837 10.4815507712897 10.1687882838739 9.6441405232276 9.37798512124503 0.241108935723544 0.227959923219176 0.223208418962790 0.236869002895550 0.225162742252678 0.239392382335884 0.225734492440383 0.226584491104283 0.247475991165699 0.223208418962790 0.228628991168108 0.229726216005679 0.223208418962790 0.223801310571326 0.237983292886624 0.224056296508986 0.230848316531873 0.223208418962790 0.223316757437856 5 5 + 23751955 23752685 23752388.455 23751602 23752860 + gene protein_coding_gene TRUE TRUE AT5G58770.1 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative Identical to Dehydrodolichyl diphosphate synthase 2 (EC 2.5.1.-) (Dedol-PP synthase 2) [Arabidopsis Thaliana] (GB:Q56Y11;GB:Q9LUY4); similar to dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative [Arabidopsis thaliana] (TAIR:AT5G58782.1); similar to Os01g0857200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044851.1); similar to Di-trans-poly-cis-decaprenylcistransferase [Anabaena variabilis ATCC 29413] (GB:YP_321433.1); contains InterPro domain Di-trans-poly-cis-decaprenylcistransferase; (InterPro:IPR001441) -1.28154477183411 -11.6524094092201 1.51264874166113e-06 0.000327255303604285 11.4846359980886 17.4971489464018 -1.28154477183411 0.126892232401396 AT5G44130_at 7.84673730625735 7.96727887910892 6.17504922928365 6.47297598072499 6.87573972083156 7.37791181407794 8.8724388314908 9.16923481221852 9.4356764190234 9.1505051026618 11.0064278404855 10.1387869340643 10.2500233114115 10.4381882857403 10.3717714473350 10.0083871047568 9.54718168854484 10.3938234835389 9.24562409105116 0.172355624164645 0.176090338687410 0.194194843850396 0.192844388018943 0.178797368841665 0.185416962774333 0.164396305692648 0.170655934912957 0.170974216465203 0.169949272090793 0.170447376174622 0.172940047929866 0.168954411233367 0.173868268131873 0.174514248211398 0.167760887307240 0.173188461336408 0.170241499006326 0.164298326903739 5 5 + 17778567 17779015 17778773.364 17778317 17779230 + gene protein_coding_gene TRUE TRUE AT5G44130.1 fasciclin-like arabinogalactan-protein, putative Identical to Fasciclin-like arabinogalactan protein 13 precursor (FLA13) [Arabidopsis Thaliana] (GB:Q9FFH6); similar to FLA9 (FLA9) [Arabidopsis thaliana] (TAIR:AT1G03870.1); similar to unknown [Brassica rapa] (GB:ABK78690.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.19038342901137 -11.4650920314533 1.72480062150504e-06 0.000361730420104045 11.4122034987984 17.3679669715309 -1.19038342901137 0.115254313259255 AT5G11430_at 4.82779176109186 4.65296598542435 4.86470117140436 4.93434509423518 4.6851332388061 4.83684519531339 4.60376434704946 4.8338021343867 5.72818819609791 5.334080321128 5.58852602499164 5.4663751310563 5.41453586180731 5.57568490082 4.78307648545135 5.28340896151524 5.19978325169654 5.03734078678674 4.88739327244641 0.208618514715268 0.181476023034854 0.18992586067137 0.189239097150304 0.182981308538421 0.183879525906013 0.189634443573228 0.187138862584442 0.192706883831621 0.191468237102762 0.188608150574457 0.184836504857686 0.182118617555375 0.181600527467778 0.195150577241262 0.184569087612961 0.183032546525365 0.185851735280126 0.185622867085286 5 5 + 3651681 3652211 3651940 3648476 3652405 + gene protein_coding_gene TRUE TRUE AT5G11430.1 transcription elongation factor-related similar to transcription elongation factor-related [Arabidopsis thaliana] (TAIR:AT5G25520.2); similar to PHD finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD24999.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain SPOC; (InterPro:IPR012921) -0.894258213406114 -11.4175032334145 1.78382505842183e-06 0.000368922296774906 11.3934575172296 10.0849912936671 -0.894258213406114 0.0577464067135155 AT5G52280_at 3.86043943817014 4.08590011216611 3.72721721731723 3.54617248790654 4.43031987742104 4.28851569679053 4.94756896441039 4.95389581788150 5.49189420502687 5.69525245644866 7.18830849384914 7.21166923599003 6.07170299504586 6.4353911509003 6.48054965122138 5.637451483635 4.90782206510213 6.2373070073571 5.89704410623874 0.237537282459361 0.231783153757206 0.247088572619412 0.246031935923376 0.231862127310917 0.244881971159114 0.229375731714818 0.228875966387653 0.229871218737244 0.230621679719690 0.229661780817034 0.229965563628348 0.228524389257380 0.2335539567747 0.230803773959005 0.230180188010068 0.238029153523632 0.233050534953170 0.232031767198787 5 5|0 +|/ 21246650 21247296 21246921.7 21244059 21247473 + gene protein_coding_gene TRUE TRUE AT5G52280.1 protein transport protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63300.1); similar to putative myosin [Oryza sativa (japonica cultivar-group)] (GB:AAO72668.1); similar to Os10g0504600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065004.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.884865518142592 -11.3965996589573 1.81045761142983e-06 0.000368922296774906 11.3851784812182 10.2130064596541 -0.884865518142592 0.0557435274942364 AT5G26200_at 4.59421610653292 4.45394362173026 5.45357609016159 5.31989611418244 5.6171632023898 5.51412709518463 6.1306908326863 6.01546983363057 6.00923144206972 5.80353898415033 5.38530277153545 6.12174406657682 5.53191919527446 6.15529674540184 6.17429812521718 6.43343043361042 6.15606332019884 5.97852744233405 5.69640245112795 0.214459682014856 0.199497362367731 0.199528958163693 0.193495974930502 0.203519850328758 0.198838149335861 0.194328136634353 0.190205479764649 0.198755959735034 0.191572168080706 0.191876339178260 0.195132728331732 0.198674550662878 0.194973243318400 0.191011959306217 0.193153596631319 0.194026994294433 0.195678282477524 0.194184453233863 5 5 + 9157703 9158257 9158020.273 9157145 9158407 + gene protein_coding_gene TRUE TRUE AT5G26200.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT1G72820.1); similar to mitochondrial carrier, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94258.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.831514947599578 -11.2772756955205 1.97119466736925e-06 0.000397192969140535 11.3373896443126 11.3016172228796 -0.831514947599578 0.0428948804671502 AT5G17170_at 10.2998515009591 10.4394163174769 10.6327404087404 10.6071745684753 9.39465153098227 8.89549083255561 11.6190328569510 11.6959344826392 9.84706451299138 10.6490752106385 10.8315437988178 10.6975337122671 10.0381197209584 10.3354372615672 10.8921914941689 10.2700668849178 10.293538288153 11.0931999996606 10.1400905166161 0.104843412940694 0.105058815686643 0.107226591934150 0.105988748717547 0.105756281016763 0.115778530869552 0.107930571660717 0.105670337905044 0.112983753881861 0.109316687964487 0.106180243646178 0.104273162807795 0.113308512272518 0.107290552814724 0.107509701978406 0.104273162807795 0.115111743695763 0.106763079522641 0.115414629044916 5 5|0 +|/ 5649743 5650950 5650508 5649195 5651160 + gene protein_coding_gene TRUE TRUE AT5G17170.1|AT5G17170.2 rubredoxin family protein similar to rubredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G51010.1); similar to Os08g0162600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061060.1); similar to PREDICTED P0577B11.138 gene product [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL53651.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Rubredoxin-type Fe(Cys)4 protein; (InterPro:IPR004039)|similar to binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G55480.1); similar to Os08g0162600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061060.1); similar to PREDICTED P0577B11.138 gene product [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL53651.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478) -1.02231628066257 -11.1372329227079 2.18036558004708e-06 0.000435075172690549 11.2801331078401 20.8323018832537 -1.02231628066257 0.0907848152696666 AT5G65020_at 8.39092947003737 8.49774997892673 6.89790935195262 7.05405246912196 8.2744481856145 8.08735263113116 8.50313809861275 8.58828257021063 7.62384505289343 8.38693224286714 8.98379220788428 9.72441909924725 8.66838226796385 8.7266076454091 9.75225937042888 8.8510640289304 8.33973654497906 9.10521113316539 8.07243670539588 0.131580652588555 0.127693657764966 0.154856215339380 0.153885760822690 0.129211859584047 0.136727598759814 0.134466951534318 0.128558751510613 0.152320547409957 0.135307533813719 0.136487354776494 0.130940949078694 0.145224944952302 0.138416743243124 0.134299992868477 0.133330842297550 0.133966180142186 0.129022354010063 0.131759537173584 5 5 + 25992053 25992755 25992492.364 25991041 25992952 + gene protein_coding_gene TRUE TRUE AT5G65020.1 ANNAT2 (ANNEXIN ARABIDOPSIS 2); calcium ion binding / calcium-dependent phospholipid binding Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides. similar to ANN7 (ANN7, ANNEXIN ARABIDOPSIS 7), calcium ion binding / calcium-dependent phospholipid binding [Arabidopsis thaliana] (TAIR:AT5G10230.1); similar to 80C09_22 [Brassica rapa subsp. pekinensis] (GB:AAZ41833.1); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Annexin, type plant; (InterPro:IPR009118) -0.835059026974612 -11.0909510148674 2.25481824035673e-06 0.000441361501861824 11.2609276466708 16.5600688632692 -0.835059026974612 0.0483456696630092 AT5G02610_at 7.65020957466085 7.7161664558421 7.89508257205118 7.8798559662666 8.16771245469754 7.88198210752117 8.01840990960674 8.25348088680237 7.97590681260848 7.85616796321506 8.03076370633253 8.06031464739237 7.81937087714283 7.78116950865398 8.14959914512637 7.59668943982727 7.80717858902365 8.03904549047546 7.8140692574696 0.116888228137199 0.114500211616060 0.116013268281419 0.119358442796407 0.112369258587673 0.118813545382191 0.11945465557395 0.121806545858316 0.115733457801508 0.113297152969559 0.118734182803695 0.116095936077894 0.116067733358162 0.112613904843863 0.119559139561655 0.116948611117534 0.126388787047329 0.115330438121211 0.113613715204415 5 5|0 +|/ 587756 588504 588182.625 587523 588731 + gene protein_coding_gene TRUE TRUE AT5G02610.1 60S ribosomal protein L35 (RPL35D) Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A) [Arabidopsis thaliana] (TAIR:AT3G09500.1); similar to 60S ribosomal protein L35 (GB:Q9M5L0); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.892321991006885 -11.0205675329821 2.37350852373767e-06 0.00045591011365747 11.2314469221367 15.8291447092283 -0.892321991006885 0.0650930241025154 AT5G46730_at 5.39740328695058 5.0845410782356 5.85698675493073 5.44460063587162 5.19833514500639 5.30180167830127 5.51879017534986 5.57869996394428 6.76007780700251 6.31709258009279 6.56619906429252 6.52134072892224 6.11169993353056 6.54186677986497 6.9411391225664 6.01815212194957 5.84269878000639 6.569926602195 6.21665529708321 0.198754087547177 0.207069384556666 0.200176352869275 0.201892995697579 0.203870938604117 0.209899346995745 0.205858869030953 0.201234357866294 0.202001505013261 0.208504694349362 0.198754087547177 0.204336204797434 0.200945547803609 0.204083897468790 0.207667778566769 0.204659883451337 0.205551504234777 0.19980191291142 0.200924093735155 5 5 + 18981476 18981932 18981698.636 18981239 18982295 + gene protein_coding_gene TRUE TRUE AT5G46730.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Eggshell protein [Medicago truncatula] (GB:ABE79200.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952) -1.01605437889095 -11.0049824874948 2.40071750673925e-06 0.000456866708409612 11.2248739288207 11.8328463996865 -1.01605437889095 0.0919374102061016 AT5G52570_at 3.53758136750943 3.32622187609804 3.81206319446538 4.46917825956768 3.61703821966602 3.98525937950225 7.49362645968669 7.14044836341197 7.24181372356185 6.50752598878299 7.84674733501966 8.75133888778749 7.03315057023156 7.59404447969826 8.28819562930184 8.6287346402672 6.1421938247998 7.18213049664133 6.93643030910543 0.285508021823542 0.281526795538455 0.283255936036231 0.278168168908282 0.274176149611095 0.298032321747912 0.280509819961028 0.270451126456442 0.280726897585736 0.270632497376872 0.276384423464777 0.272169810462436 0.269258317492540 0.277013371561725 0.269258317492540 0.27692871450343 0.277902101062438 0.282435638850087 0.275026969008402 5 5|0 -|/ 21352139 21353753 21352840.125 21352019 21354228 - gene protein_coding_gene TRUE TRUE AT5G52570.1 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); beta-carotene hydroxylase Converts β-carotene to zeaxanthin via cryptoxanthin. similar to BETA-OHASE 1 (BETA-HYDROXYLASE 1), beta-carotene hydroxylase [Arabidopsis thaliana] (TAIR:AT4G25700.1); similar to putative beta-carotene hydroxylase [Brassica rapa] (GB:AAS55552.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Carotene hydroxylase; (InterPro:IPR005596) -1.33573775880687 -10.9499483665570 2.49960296764211e-06 0.000467036211658287 11.2015314133726 11.961963968381 -1.33573775880687 0.148544485890596 AT5G46580_at 7.34055480893405 7.7964141127242 7.44549074650347 7.25568663473862 7.85919083579697 7.30045597809119 7.7739007416661 8.14698321700322 7.83631300421707 8.1363388793761 7.00479713979071 7.74094461869664 7.42932480561007 7.43236067631577 7.97466724653068 7.8624130671984 7.5083293288896 7.28689585305992 7.79690123708324 0.204384174346286 0.191047792569031 0.200294926630049 0.203195452986583 0.193622290205001 0.202684761573338 0.202359360388003 0.189837024722427 0.195973267084905 0.185836173492390 0.193254937669216 0.191762495257307 0.190958230608128 0.202717519030914 0.185836173492390 0.185836173492390 0.197002540508625 0.195735167238263 0.186424108289638 5 5 - 18914741 18915143 18914960.273 18914672 18916872 - gene protein_coding_gene TRUE TRUE AT5G46580.1 pentatricopeptide (PPR) repeat-containing protein similar to chloroplastic RNA-binding protein P67, putative [Arabidopsis thaliana] (TAIR:AT4G16390.1); similar to putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa (japonica cultivar-group)] (GB:AAS01974.1); similar to hypothetical protein MtrDRAFT_AC146791g19v2 [Medicago truncatula] (GB:ABE88021.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.30690930749502 -10.9293056123519 2.5378523481083e-06 0.000469910967060618 11.1927225563616 15.3414101172174 -1.30690930749502 0.144291530016164 AT5G59430_at 8.40457839995056 8.46219519091371 8.43433040870435 8.5613337495064 9.3739330551711 9.13374735379432 9.354508220142 9.1899026715166 8.62998441002419 8.53078669890919 8.12347691704288 9.0606505966234 8.24063848940905 8.46009957162329 8.24312946150129 8.78357553056635 8.43184227663468 8.26545988698054 8.3963885161483 0.143745922385106 0.143952018909452 0.14659441974899 0.142274702176578 0.149762726503100 0.149719177734446 0.144929446029862 0.146854330558366 0.145805380558999 0.146504696595906 0.147235305730016 0.145907657454707 0.148101911678943 0.144115299152283 0.149666361787323 0.141725588806518 0.144613524154811 0.141725588806518 0.150716961012036 5 0|5 /|+ 23987178 23987808 23987497.2 23984539 23988171 + gene protein_coding_gene TRUE TRUE AT5G59430.1|AT5G59430.2|AT5G59430.3|AT5G59430.4 ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1); DNA binding|ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1) similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.2); similar to telomere binding protein [Solanum lycopersicum] (GB:BAF36749.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.2); similar to telomere binding protein [Solanum lycopersicum] (GB:BAF36749.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.1); similar to telomere binding protein TBP1 [Nicotiana glutinosa] (GB:AAN39330.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.840870921989139 -10.8240044430733 2.74334984330871e-06 0.000498970602239264 11.1473297857908 17.3493972810415 -0.840870921989139 0.0558711212542325 AT5G43880_at 6.61928746799119 6.67384764769741 5.71523221500403 5.78082230241158 7.11496820712057 7.07859601754533 7.53821739904626 7.87450300829809 7.30827045122507 7.70540601020628 9.0034180021009 8.8089851347664 8.40148168218677 8.82293124024877 8.66068719623151 8.74613178299556 7.52167874474746 8.58011425264746 7.60360767824523 0.207213570865222 0.201174375160291 0.231325049808323 0.214903573662654 0.205379789308074 0.211045382980574 0.202964044426876 0.201292769780816 0.222336075522274 0.200290961132941 0.200019346427502 0.20150087067999 0.200019346427502 0.200706555216885 0.200890253925829 0.202557679718524 0.209909050405183 0.205166051560616 0.203268565145151 5 5 - 17657472 17657771 17657624.727 17657045 17660875 - gene protein_coding_gene TRUE TRUE AT5G43880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28760.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89949.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6B6 (Hypothetical pro (PTHR21726:SF6) -0.853856656519684 -10.7754071557646 2.84435932750736e-06 0.000512804487500572 11.1261197066002 14.8530708919974 -0.853856656519684 0.0603685065803939 AT5G03555_at 6.21428860564876 6.82413642911712 6.18386233763604 7.14316104658872 6.34130887897605 6.16897493898926 8.63927388808151 9.00674839715469 8.3078758370512 8.49400589791502 8.24570144300266 8.28892620513859 8.76035627915895 8.07930502429686 7.94054434537284 8.80968875909102 8.082988871487 8.36625221836945 8.93917601254488 0.230068259795978 0.23121572661385 0.245616244005529 0.223572633960875 0.223089357705412 0.242413909549940 0.221456495109944 0.220828346291931 0.225892308207560 0.219733440481763 0.225127359049879 0.219185249220438 0.219877431106756 0.220380150098117 0.225309548203831 0.223276671118860 0.225558374825654 0.225773898423290 0.220848721116685 5 5 - 898371 898921 898697.091 898240 900158 - gene protein_coding_gene TRUE TRUE AT5G03555.1 permease, cytosine/purines, uracil, thiamine, allantoin family protein similar to cytosine/purines, uracil, thiamine, allantoin transporter [Alteromonas macleodii 'Deep ecotype'] (GB:ZP_01111046.1); similar to Os02g0666700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047676.1); contains InterPro domain Permease for cytosine/purines, uracil, thiamine, allantoin; (InterPro:IPR001248) -1.68577131269442 -10.6723835529764 3.0724208551345e-06 0.000549104588039945 11.0806015966942 15.5162558031457 -1.68577131269442 0.208880985280352 AT5G59670_at 8.94091398429693 8.95495428025827 8.9225077487561 9.07842282668504 7.49916793966355 6.76447836796772 7.39718814348156 6.96872448354646 7.96874739097656 5.7482453358283 5.26251317884569 6.95477388804004 5.51693263238505 6.9056433688453 4.65769837010513 6.60757671599413 6.37610373502959 6.6889661725047 6.31481843019046 0.242579859124281 0.244670290106989 0.239255653800078 0.239255653800078 0.242893292654923 0.266258631918869 0.239255653800078 0.240464165256159 0.25531890274344 0.249627878461611 0.245429816776956 0.239255653800078 0.252331783172194 0.250353398167094 0.260731021238393 0.239255653800078 0.246749612763361 0.246152064717238 0.240996982141147 5 5 + 24062079 24062662 24062383.364 24058720 24062878 + gene protein_coding_gene TRUE TRUE AT5G59670.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59680.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59650.1); similar to MEE39 (maternal effect embryo arrest 39), kinase [Arabidopsis thaliana] (TAIR:AT3G46330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.29168566652842 -10.5342129886451 3.41075602970967e-06 0.000594074425523866 11.0183513741412 14.4650679185239 -1.29168566652842 0.149655419621820 AT5G43745_at 4.72982992571118 4.71702152899313 4.47628649680701 4.62637921045188 4.55065157193942 4.19754289368118 5.89369093814541 5.54551801906978 5.60617795628127 5.6654587661308 6.57188958239245 7.31137600239707 5.79837059452857 6.20772822302949 6.80862328365277 6.50131489571109 5.60987091049964 6.65438185368427 5.64575880807608 0.223759442787353 0.218347606818629 0.217621834364279 0.222241327879822 0.221772232236723 0.223379029570485 0.219152958582635 0.217533367395964 0.217680321469232 0.221899072816812 0.230626270040567 0.220892730586163 0.238965277049928 0.231755335931211 0.218609308841180 0.214169674775156 0.221931989973654 0.21873076847416 0.219495828539972 5 5|0 -|/ 17586663 17587686 17587256.1 17586374 17592198 - gene protein_coding_gene TRUE TRUE AT5G43745.1 phosphotransferase-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02940.1); similar to Os03g0163100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049055.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06856.1); contains InterPro domain Protein of unknown function DUF1012; (InterPro:IPR010420) -0.960192453432136 -10.5182579641019 3.45241535277705e-06 0.000596277313756846 11.0110728905772 10.8781532039664 -0.960192453432136 0.089688740939135 AT5G51010_at 9.15084165369664 9.29302193546175 9.3315174582706 9.21408973123152 8.58718565363985 8.48902074757378 9.97069597435573 10.0359267195715 8.6251513522908 9.24441361150605 10.1356613435146 10.0211321492951 9.22790009314463 8.86590667683397 10.1179692125469 8.92719036253788 8.87701609831475 10.3482795723585 8.77750762195186 0.152748165168567 0.150651875497926 0.151668893851376 0.151744685752935 0.156824220335370 0.159082896942577 0.156623684559573 0.152069849306165 0.168255878753025 0.153063767746059 0.150669081670784 0.148711240980969 0.151717249968177 0.17253906042326 0.154967709388086 0.154198117509795 0.170005771952248 0.151341967492527 0.169189787343325 5 5|0 +|/ 20761862 20762535 20762117.778 20761792 20762929 + gene protein_coding_gene TRUE TRUE AT5G51010.1 rubredoxin family protein similar to rubredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G17170.1); similar to Rubredoxin-type Fe(Cys)4 protein [Medicago truncatula] (GB:ABE80208.1); contains InterPro domain Rubredoxin-type Fe(Cys)4 protein; (InterPro:IPR004039) -0.75662684257313 -10.4451551814379 3.65064334350009e-06 0.000625259599647326 10.9774819795609 18.4827822178008 -0.75662684257313 0.0378732424923831 AT5G01015_at 4.03890863277949 4.74724542739366 1.82897472201451 1.89643456651700 2.44268699716817 2.54726653520435 4.63885047035773 5.08001781047401 6.90780854165475 6.4151574184922 9.9923580908818 9.9533325300703 8.02732166452794 9.15918809435727 9.8797857416281 9.33062708643607 5.3242008411577 8.60071541664306 7.25694387608271 0.353064188003552 0.347788370577677 0.387779931228988 0.384543581917559 0.355929197801161 0.372616551399099 0.343807248773651 0.351854385478649 0.351125578951345 0.347462279553053 0.362620102054504 0.364891783848371 0.347893986512141 0.360588209983024 0.367326353611806 0.353667472002352 0.367092042331848 0.348560921549913 0.347344740510351 5 5 - 5336 5721 5468.636 5255 5890 - gene protein_coding_gene TRUE TRUE AT5G01015.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65295.1); similar to Os11g0463700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067867.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28368.1) -1.25638907026612 -10.4223161448760 3.71513658322869e-06 0.000631046878639063 10.9669052482295 11.2242537095499 -1.25638907026612 0.146009056246803 AT5G07090_at 9.36372161320815 9.31123569135664 8.80406369932168 8.91571034071797 9.15887616364847 8.79539020645764 9.48508034493516 9.74932625842123 9.08691809787545 9.0702763941608 9.37437159704506 9.88073159927348 9.3582154263541 9.13560722353317 9.98392392252072 9.064545962137 8.91563550751358 8.89976553308434 9.00666521241881 0.132817461742013 0.130723469440475 0.135959207861548 0.131550830321398 0.136107572324862 0.142906750204599 0.134633643922486 0.126530122811985 0.143484958300552 0.134553631019768 0.129360300072912 0.129845846501778 0.126530122811985 0.134246261616054 0.131585304553319 0.132161749492093 0.135921738395011 0.138652562888537 0.131843381961613 5 5|0 +|/ 2203050 2203778 2203536.6 2202381 2204079 + gene protein_coding_gene TRUE TRUE AT5G07090.1|AT5G07090.2 40S ribosomal protein S4 (RPS4B)|structural constituent of ribosome Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribosomal protein S4-2 (RPS4B) [Arabidopsis Thaliana] (GB:P49204;GB:Q42346;GB:Q9FL39;GB:Q9LYQ6); similar to 40S ribosomal protein S4 (RPS4D) [Arabidopsis thaliana] (TAIR:AT5G58420.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4E; (InterPro:IPR000876); contains InterPro domain KOW; (InterPro:IPR005824) -0.893361588277669 -10.2379367602621 4.28457581905197e-06 0.00070448220569313 10.8800617380654 18.3885352887172 -0.893361588277669 0.0806456436194608 AT5G40480_at 5.83601505972429 5.83406546826766 6.14618765555267 6.2685552200222 5.97082186985337 6.07927319978488 6.34178422251998 6.21815146070965 4.82688123325290 5.45361515796193 5.40101609035509 5.96236827710577 5.59547042929197 5.53109434219331 5.98708160638471 6.20128977459164 6.11742802751155 5.71162330426342 5.65721347520487 0.212421923695969 0.201717561311062 0.199955928358761 0.202161430667097 0.195487823586404 0.206884703156224 0.197942023386218 0.198923312934281 0.206700964511741 0.202396382388089 0.200602032506697 0.207974733876245 0.198778637485676 0.210343036937383 0.201317553133708 0.198536372745888 0.217051326377558 0.205328079394386 0.195487823586404 5 5|0 +|/ 16240388 16241147 16240864.3 16230589 16241210 + gene protein_coding_gene TRUE TRUE AT5G40480.1 EMB3012 (EMBRYO DEFECTIVE 3012) similar to hypothetical protein DDBDRAFT_0187985 [Dictyostelium discoideum AX4] (GB:XP_636668.1); similar to Os09g0565500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063948.1); contains InterPro domain Bacterial Ig-like, group 2; (InterPro:IPR003343); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964) -0.734937167320645 -10.2260511485784 4.32447344183857e-06 0.000705399094145122 10.8743733336628 11.6498524880220 -0.734937167320645 0.0354759412212498 AT5G58260_at 9.80257331967182 9.69914365094626 9.21875076564673 9.43295066342001 9.95039299720537 9.69708100744649 10.7071003818594 10.7164437930453 10.2013504005281 10.3427207263754 10.5078888597489 10.7220267068350 10.5385642116681 10.4895389396018 10.8220904546116 10.9570313012344 10.3259377584322 10.4238237141043 10.2269144930349 0.095368017071339 0.0923715712079852 0.0946734289049277 0.099440963881884 0.0951415249486164 0.0961162141368273 0.0944976210455178 0.098394625702733 0.115562534288369 0.0923715712079852 0.0923715712079852 0.0940394672238848 0.0923715712079852 0.0975375881226482 0.0967448988692265 0.0923715712079852 0.100642761616233 0.0991791274524553 0.0938947463553938 5 5|0 -|/ 23578329 23579101 23578719.1 23578102 23579170 - gene protein_coding_gene TRUE TRUE AT5G58260.1 Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. similar to Os01g0882500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045009.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82572.1) -0.808374051138476 -10.2111710977377 4.37500433741702e-06 0.000708022363401778 10.8672361930944 20.330733547368 -0.808374051138476 0.0601557417677662 AT5G09760_at 6.8340066500148 7.22657138167659 6.73909795356797 6.99759405654807 6.24281221378487 6.65563415079783 8.72859670885057 9.1945937017771 8.15518782085605 8.83220248869265 9.7096725140043 10.0371660100041 9.11858752308403 9.3347182491199 9.3233679998525 9.45850332614358 8.88364712688597 9.5771237764007 8.9256544262314 0.197861468071801 0.192361655758136 0.193483411225986 0.186864846788272 0.194000635562846 0.199823987508484 0.196402322738804 0.190965601759564 0.207005635078474 0.187361173836811 0.184169051192374 0.188287282802552 0.183316081001245 0.188089001960504 0.187088064948592 0.187890103518691 0.194517457146595 0.186624035002336 0.187284464121148 5 5 + 3033832 3034339 3034112.182 3032376 3034544 + gene protein_coding_gene TRUE TRUE AT5G09760.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G64640.1); similar to 52O08_4 [Brassica rapa subsp. pekinensis] (GB:AAZ67549.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -1.16030929541837 -10.1428796658685 4.61546187537337e-06 0.00073535604367319 10.8342566030834 16.3613782992674 -1.16030929541837 0.134994002647527 AT5G52470_at 10.6427635205773 10.7314851168782 10.9258403016484 10.8517490439431 10.8419998140932 10.8142091460858 11.1269197583918 11.2210058219761 10.6501286286883 10.6281628060969 10.5206900019241 10.3931317153704 10.5533824796113 10.3992997659894 10.5547534450455 10.3242642395178 10.7217739754865 10.2857884245203 10.5416565953198 0.0658554986250769 0.0645421159700259 0.0667115191464246 0.0659368221066351 0.0655919391143088 0.0716479019633999 0.0669020273268381 0.0659655593772493 0.0670763060980047 0.0650617766895289 0.0646685105657494 0.0653499709765022 0.0647047048463803 0.0671210512833476 0.067714704616575 0.06429067606834 0.0708636732821009 0.0655689274962531 0.06429067606834 5 5|0 +|/ 21312379 21313708 21313261.222 21311454 21313902 + gene protein_coding_gene TRUE TRUE AT5G52470.1 FIB1 (FIBRILLARIN 1) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. Identical to rRNA 2'-O-methyltransferase fibrillarin-1 (EC 2.1.1.-) (SKP1- interacting partner 7) (FIB1) [Arabidopsis Thaliana] (GB:Q9FEF8;GB:Q9FUZ8;GB:Q9SP30); similar to FIB2 (FIBRILLARIN 2) [Arabidopsis thaliana] (TAIR:AT4G25630.1); similar to tobacco fibrillarin homolog [Nicotiana tabacum] (GB:BAE91898.1); contains InterPro domain Fibrillarin; (InterPro:IPR000692) -0.708236318176904 -10.1187581578019 4.70386585433667e-06 0.000743676030805049 10.8225192543831 21.4323889901 -0.708236318176904 0.0262367905324073 AT5G61130_at 4.09619768901301 4.91351292762744 3.51554029668913 3.81891787111272 3.53166193004281 4.63867672214379 6.15255044611635 6.42394865425386 5.87363059409849 6.56253050406417 6.08867027555004 6.62231487037916 5.90580430595707 5.48098194534874 6.7801711496661 5.84199751330061 5.51101045410062 5.99913011864391 6.32864605256876 0.217090254024720 0.229227342049089 0.224316460171131 0.227930306161125 0.226650598349629 0.230483665709908 0.220936475612830 0.234723799660352 0.227885487210701 0.217090254024720 0.217090254024720 0.22121018168086 0.220932986369056 0.229643735585465 0.223163813331875 0.217090254024720 0.226911466276105 0.218842989715297 0.22353020841255 5 5|0 -|/ 24604679 24606040 24605059.111 24604439 24606806 - gene protein_coding_gene TRUE TRUE AT5G61130.1 glycosyl hydrolase family protein 17 Identical to Glucan endo-1,3-beta-glucosidase-like protein 2 precursor [Arabidopsis Thaliana] (GB:Q9FNQ2); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); contains InterPro domain X8; (InterPro:IPR012946) -1.84594099375274 -10.10474836302 4.75607128649584e-06 0.000746189731342792 10.8156808431963 10.7782237151393 -1.84594099375274 0.248330782773111 AT5G50740_at 5.96202938576726 5.58885267373984 3.94190797789214 3.83757019480893 4.34190160961977 4.4010277441017 5.05234889772909 4.53172395891009 6.22542825206573 6.03147757432887 7.98220804172711 8.6669126476976 7.17720958886079 7.55654593797742 8.36793062802539 7.20828212865051 5.54419066393266 7.06060259888865 6.7072668294321 0.201135242283002 0.201744922701400 0.222700357541883 0.213923337198009 0.202865134573111 0.212409392959792 0.205762175032769 0.201849615784238 0.200895449012314 0.201126639028405 0.210760285993875 0.215923069574988 0.207297010294403 0.206665061900072 0.208862008929691 0.203522837174048 0.204249599654848 0.200534287464026 0.202817466755853 5 5|0 -|/ 20653216 20655038 20654013.81 20653092 20655222 - gene protein_coding_gene TRUE TRUE AT5G50740.1|AT5G50740.2 metal ion binding| similar to ATFP3 (Arabidopsis thaliana farnesylated protein 3) [Arabidopsis thaliana] (TAIR:AT5G63530.2); similar to OSIGBa0096P03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66434.1); similar to putative farnesylated protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23078.1); similar to Os02g0510600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046934.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121)|similar to ATFP3 (Arabidopsis thaliana farnesylated protein 3) [Arabidopsis thaliana] (TAIR:AT5G63530.2); similar to OSIGBa0096P03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66434.1); similar to PPAK motif; Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE84491.1); similar to Os04g0390100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052639.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -1.02650288864814 -10.0099034836043 5.12684882759091e-06 0.000786353677052581 10.7689694591468 11.5906083876939 -1.02650288864814 0.112777144366133 AT5G23020_at 7.21148262117543 7.76241704368285 4.33557558870323 4.71139149349373 8.23959751253482 7.40795510170154 4.40523814649009 4.73415557822735 2.65391234857345 7.4353173182914 3.86675481804194 2.41447814737001 4.50139107714281 5.63993574037399 1.96692466916786 2.59098370619539 5.20032874777049 5.0017528875801 5.11203592023704 0.295224829986839 0.298493569921467 0.298491981570587 0.292875862195631 0.297998018858192 0.293871043252293 0.295273112571263 0.293546021961044 0.302954759269874 0.298263173543706 0.293192483485592 0.311510270702684 0.292875862195631 0.292875862195631 0.306505987885339 0.31014163407533 0.294137573809704 0.297783410329677 0.297673729400741 5 0|5 /|+ 7720566 7721613 7721246.875 7718124 7721842 + gene protein_coding_gene TRUE TRUE AT5G23020.1 MAM-L (METHYLTHIOALKYMALATE SYNTHASE-LIKE); 2-isopropylmalate synthase methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). similar to MAM1 (2-isopropylmalate synthase 3), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT5G23010.1); similar to methylthioalkylmalate synthase a [Boechera divaricarpa] (GB:CAJ55512.1); similar to methylthioalkylmalate synthase c [Boechera divaricarpa] (GB:CAJ55514.1); similar to methylthioalkylmalate synthase b [Boechera divaricarpa] (GB:CAJ55513.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891); contains InterPro domain Alpha-isopropylmalate/homocitrate synthase; (InterPro:IPR002034) -1.47446398595841 -9.94508470847275 5.39863931703326e-06 0.000821907139924593 10.7366244010955 10.5834302623708 -1.47446398595841 0.193061237106279 AT5G17050_at 6.51414252582713 6.85340676571814 7.61372124860531 7.5049974474657 6.72821050646364 7.00603805866374 7.7615530762408 8.16921190984733 7.57038714802021 7.64793955840061 7.61664443099541 7.5548403248212 7.76467109587742 7.924949135598 7.41528423871692 8.03646978008671 8.14762895188853 7.52204394168301 7.54049665079113 0.130149304805915 0.133735476589154 0.124351681403843 0.124230260961039 0.131196001268333 0.128364430982125 0.129315176339345 0.129883367705541 0.130009595996754 0.130224880389188 0.123499590299042 0.123127015316870 0.129736613783815 0.123485031346198 0.123468215719411 0.127337208480714 0.132907707287271 0.123428296037258 0.124199453517070 5 5 - 5607885 5608406 5608199.091 5607791 5609495 - gene protein_coding_gene TRUE TRUE AT5G17050.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17040.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G30530.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17030.1); similar to UDP-glucose:flavonoid 3-O-glucosyltransferase [Vitis vinifera] (GB:BAB41020.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.96102721174985 -9.7299281352873 6.42180952657032e-06 0.000949543419240762 10.6267470125517 14.9359556622852 -0.96102721174985 0.105306992585878 AT5G42720_at 3.39077671000795 3.57550548794143 3.55416018287354 3.49007751021003 2.91399922976257 2.53309735538502 5.23720266041173 5.79591645507445 4.80401095184102 5.978775117330 6.12882774118754 7.82958422610706 6.14797521077713 6.39477353961922 7.1685517681333 6.52445463295946 6.15891912835066 6.47099863656078 5.64186636079497 0.299362172547477 0.291616477629441 0.302833115731438 0.298335195455770 0.29153839985791 0.305023095352001 0.293075298536685 0.289141170731048 0.304152066015053 0.285170926320794 0.290009331154038 0.288024899925145 0.287201944680671 0.294778558978409 0.295145455802653 0.287368824739131 0.301449223986841 0.290186511942072 0.286833350844808 5 5 + 17149205 17149950 17149626.2 17147417 17150071 + gene protein_coding_gene TRUE TRUE AT5G42720.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G34480.1); similar to beta-1,3-glucanase-like protein [Olea europaea] (GB:AAK58515.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.04160196952779 -9.71042585960487 6.52468311518076e-06 0.000957152254583096 10.6165929712475 9.85028932585028 -1.04160196952779 0.121813601037303 AT5G45920_at 6.6866585106105 6.87458361964671 6.36673492216408 6.35287389794848 7.4042020513764 6.84990980229931 8.24848332932133 7.49465550445761 5.55822005624562 6.34751971533197 5.97976648180821 6.30222237388927 6.4359912921515 6.0444333275343 5.98091152605002 6.28047366886286 6.69537203725911 6.16290876732455 6.43967075524824 0.242351276989751 0.233257014307955 0.243985457423464 0.236611186505948 0.234990610286423 0.245706442787254 0.237914582839576 0.235700183078136 0.243659079070787 0.236529473886108 0.230317011099116 0.225718216464417 0.239287347188646 0.239149663095234 0.233074951976908 0.225965871457244 0.235824413456667 0.23488672893246 0.230073890614827 5 5|0 +|/ 18640452 18641826 18640944.111 18639986 18642012 + gene protein_coding_gene TRUE TRUE AT5G45920.1 carboxylic ester hydrolase similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G62930.1); similar to putative CPRD49 [Oryza sativa (japonica cultivar-group)] (GB:BAD69418.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -1.27679136323794 -9.70261252161688 6.5664090130482e-06 0.000957152254583096 10.6125156743192 13.2099610930457 -1.27679136323794 0.165174694511924 AT5G67070_at 7.81409706889626 8.44984706563661 3.83890906716836 3.66616003702077 5.56301568295683 6.68191450540189 8.19452212116824 9.3219381261689 8.11282669329486 8.92804227676631 10.5306326788692 10.9570716649362 9.47396820974519 9.85318205838 10.8019701391253 9.5744572903172 7.91166187723275 10.2261264454660 9.14088691421257 0.236072828485299 0.232910479549689 0.323804707650271 0.288499989783974 0.264732947531691 0.259231966743382 0.229011918427541 0.235064285621649 0.279763992796562 0.233829323286203 0.232066314531278 0.240609348001579 0.232759692881355 0.238867211513002 0.244353481907788 0.22999169968234 0.254981987158586 0.229011918427541 0.233265224785745 5 5 + 26785388 26785709 26785562.091 26785246 26786072 + gene protein_coding_gene TRUE TRUE AT5G67070.1 RALFL34 (RALF-LIKE 34) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL23 (RALF-LIKE 23) [Arabidopsis thaliana] (TAIR:AT3G16570.1); similar to Rapid ALkalinization Factor [Medicago truncatula] (GB:ABE93558.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -2.07528714911462 -9.68374329319919 6.66840088994504e-06 0.000965173890107428 10.6026472039862 16.012993337769 -2.07528714911462 0.297584676557523 AT5G65260_at 9.10676217083908 9.25338809560418 9.41302847971868 9.52147596618192 9.64563152075496 9.44390897780066 9.5634760307591 9.55758616921186 9.25373232542766 9.34634728098452 9.11600366495641 9.03719797727051 9.25310247859719 9.09288248903715 9.22645822993683 9.22546162753573 9.30645185071676 9.27447912270954 9.3066377101957 0.0796145700067761 0.0820608207454303 0.0802167454989924 0.0822302758569333 0.0795062631432688 0.0810945259148913 0.0838006181849101 0.0833483599016052 0.084370961499814 0.0802361560205336 0.079667232213489 0.080452357788385 0.078879229929266 0.0841563629127794 0.0838661688383043 0.0836095265126072 0.078879229929266 0.0814844665517662 0.0805846082516229 5 5|0 -|/ 26097733 26100114 26098432.2 26097457 26100243 - gene protein_coding_gene TRUE TRUE AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G10350.1); similar to Os02g0757900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048174.1); similar to putative poly(A) binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17091.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.720699254858032 -9.62034787863698 7.02412630267603e-06 0.00100955151095784 10.5692648788287 18.6850290691743 -0.720699254858032 0.0470717255314668 AT5G49910_at 9.3084899166682 9.39448844277583 9.7218098052019 9.66443814919669 9.49819309554544 9.19571489057564 10.5854339945718 10.4537146693412 9.75502726147646 10.3119367560997 10.2291712634347 10.6130278433216 10.3353293846299 9.78759916516476 10.7283146971476 10.2051411880395 10.1541777945298 10.1359074029230 10.0084645898585 0.101423461416164 0.0993023967105856 0.101749964974077 0.100256912431723 0.100188281823642 0.0995002246157028 0.0973763268599918 0.100544130260326 0.109395350900087 0.0991493919944712 0.102359872659272 0.0973763268599918 0.0979351482607572 0.103398963653601 0.0973763268599918 0.0985482465190064 0.100918455068043 0.103904855701999 0.0980499488969225 5 5 + 20322853 20323482 20323264 20320640 20323695 + gene protein_coding_gene TRUE TRUE AT5G49910.1 cpHSC70-2 (HEAT SHOCK PROTEIN 70-7); ATP binding / unfolded protein binding heat shock protein 70 (Hsc70-7); nuclear similar to MTHSC70-1 (mitochondrial heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G37910.1); similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to CPHSC70-1 (chloroplast heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G24280.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE79560.1); similar to heat shock protein 70 [Cucumis sativus] (GB:CAA52149.1); similar to heat shock 70 protein [Spinacia oleracea] (GB:AAB91471.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Chaperone DnaK; (InterPro:IPR012725); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.755172469253948 -9.55304211819765 7.4249492205268e-06 0.00104820627787502 10.5334369902017 19.8771486012565 -0.755172469253948 0.0598304556176069 AT5G56100_at 7.67753019501526 7.9156714028129 7.84388000336151 7.85028550853651 8.61373546286056 8.19295862845721 7.92297821037665 8.13580349211258 8.65434813590483 8.3720695133932 8.20497739028914 8.5866538559853 8.18043909923725 8.0254731555369 8.39466677038762 8.40973759993478 8.19223905013883 7.58394852936446 8.08708156024375 0.132185602889380 0.126065784850926 0.128632714616342 0.13472561356672 0.129555864364770 0.134479111502091 0.132044725072622 0.126371395767923 0.132005955506295 0.129292065086433 0.129927758183310 0.129274922017079 0.129247566718216 0.128404541651343 0.127559641937837 0.125535552601048 0.136285070288812 0.139791050781313 0.132195462750562 5 5 + 22734409 22734747 22734571.182 22734341 22734977 + gene protein_coding_gene TRUE TRUE AT5G56100.1 glycine-rich protein / oleosin contains InterPro domain Oleosin; (InterPro:IPR000136) -0.873575238968577 -9.48623725810879 7.84797651546883e-06 0.00108981794232381 10.4974772226906 16.3033220302116 -0.873575238968577 0.0914246348040963 AT5G01790_at 4.60074501530808 5.39516835977436 4.3803386693931 4.29788892470466 4.99099403304631 4.7623990871207 8.00041530774092 8.43427401845789 4.83450303132268 5.93319026912906 6.96809560198316 7.8093626500149 8.40888226043897 6.3645307829496 7.00248234775276 7.1476491977535 5.92542970317313 6.70583656838772 5.57843286336674 0.267710502029456 0.271916674136657 0.266956254750906 0.272942978219488 0.265979291927674 0.267291068137494 0.266431995596605 0.268206782448044 0.2952080884329 0.263374548565004 0.262569467395566 0.261153416504024 0.261153416504024 0.273314189777091 0.266065416803774 0.261153416504024 0.285977725261841 0.290611484680293 0.269522513297762 5 5 - 305068 305591 305363.455 304894 305693 - gene protein_coding_gene TRUE TRUE AT5G01790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40475.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20927.1); similar to Os01g0166500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042116.1); similar to Os05g0335500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055233.1) -1.22706516827215 -9.4499827656511 8.0886692992608e-06 0.00110717943548535 10.4777941482938 11.8528991071080 -1.22706516827215 0.162191594916184 AT5G16130_at 10.0843599267705 10.2189993172152 9.82451927486572 9.74023052537096 9.95689122800085 9.84638218746922 10.6413728370399 10.5271757793564 9.61124789438415 9.93794589942106 10.2427818590832 10.8837269315966 10.1485680279301 9.87416232623405 10.9605851690740 9.98673701201029 10.2539808543018 9.9871009264144 9.85675836317018 0.116824193456554 0.110317096444613 0.119675820916097 0.113349278303277 0.107211422113598 0.120028139406647 0.111521905129834 0.115106060816256 0.124923174038983 0.117458855704826 0.112041102898858 0.108584410139931 0.115725254025305 0.119216803207279 0.120127829541309 0.113585582581125 0.114426511504911 0.111635337110985 0.116343183179472 5 5 + 5269307 5269883 5269623.727 5268424 5270159 + gene protein_coding_gene TRUE TRUE AT5G16130.1 40S ribosomal protein S7 (RPS7C) Identical to 40S ribosomal protein S7-3 (RPS7C) [Arabidopsis Thaliana] (GB:Q8LD03;GB:Q9LF15); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96919.1); contains InterPro domain Ribosomal protein S7E; (InterPro:IPR000554) -0.676682090613893 -9.30945788175566 9.10190498636663e-06 0.00121474126626605 10.4003671710105 20.1520861048389 -0.676682090613893 0.0388836441988831 AT5G18460_at 4.27317704524153 4.06309122843773 3.54629016703048 3.46354303458227 3.76420313804729 3.88239600273634 4.22941513327615 4.21551140465204 5.57455224246268 4.69147190350387 6.43070500729139 6.94915521971988 5.76939235271518 5.63571344432786 6.84464193784444 6.12678914756454 4.58938484531397 6.34172739898748 5.16932429811005 0.227802483050433 0.236847408677515 0.232078061561694 0.228879487646516 0.231018141914446 0.239076649401007 0.229240001941074 0.237869121491350 0.226357099996312 0.232263545865737 0.226357099996312 0.229732354363170 0.226357099996312 0.233164517094570 0.226357099996312 0.228894327419378 0.233568184867816 0.226357099996312 0.229552929761607 5 0|5 /|+ 6125805 6126373 6126179.1 6122902 6126723 + gene protein_coding_gene TRUE TRUE AT5G18460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23340.2); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.689032861481077 -9.3006531881025 9.1699148855145e-06 0.00121592227588447 10.3954552027169 9.54523080287354 -0.689032861481077 0.0441699800475265 AT5G50110_at 5.5366354435525 5.58519254178766 6.15698252098017 6.07317352246671 6.59557654482215 6.63352553138344 6.28536484738144 6.4338471088743 6.2681433212478 6.7462825099906 6.92927260402 6.69233948418261 6.8971638049221 7.0724326226751 6.36788252541365 6.70496999047138 7.06787984365324 6.355460235451 6.15807963230456 0.189629625593380 0.191378763100575 0.194174726974808 0.191913634392556 0.185271532660551 0.188435704717962 0.191296669744277 0.197656649700740 0.200837472582163 0.187683190256743 0.185271532660551 0.187798882903285 0.189072710425341 0.191096662365008 0.190586923375927 0.186408218520643 0.197477141630449 0.191490406114150 0.191636833075239 5 5|0 +|/ 20391480 20393269 20392735.333 20390794 20393433 + gene protein_coding_gene TRUE TRUE AT5G50110.1 methyltransferase-related similar to Glucose inhibited division protein [Medicago truncatula] (GB:ABE82388.1); contains InterPro domain Glucose inhibited division protein; (InterPro:IPR003682) -0.658284063108582 -9.27515662140265 9.37004993621748e-06 0.00122911330481988 10.3811903275102 12.7384174043375 -0.658284063108582 0.0313744084924739 AT5G64940_at 9.72802656083442 9.79074634209417 10.0716894904209 10.0753937607675 10.0612334340872 9.6154061014427 11.4517621562997 11.3360778096382 10.8773148065055 11.0238335031988 11.2781139593996 11.4812667127955 10.9428464527278 10.9489595184453 11.3042139776283 11.4149545079656 10.8999479631027 11.1962598649852 10.9928123951039 0.101098401187634 0.0953723445934043 0.108820670297234 0.0953723445934043 0.095409398182327 0.099276263853415 0.102627162989348 0.103517001277396 0.111996672517549 0.0953723445934043 0.0991627557511703 0.09617872836263 0.0953723445934043 0.104755934021071 0.106914951694359 0.0953723445934043 0.110928951362121 0.098171468674992 0.09711692822034 5 5|0 +|/ 25969446 25970471 25969873.5 25966199 25971049 + gene protein_coding_gene TRUE TRUE AT5G64940.1|AT5G64940.2 ATATH13 (ABC2 homolog 13) Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins. similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT3G07700.2); similar to Os02g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047212.1); similar to putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD33355.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.808342185479129 -9.27277366086878 9.3890005344327e-06 0.00122911330481988 10.3798539944710 21.3402789258984 -0.808342185479129 0.0804457352770493 AT5G62840_at 7.60341535653488 7.73633467088538 7.78205531125695 7.8065949736902 7.72992778425627 7.97449868308729 8.58136243304442 9.05972438426506 8.5229085648153 8.4764791372714 8.67390930350369 8.84780716844184 8.65444903109715 8.98926398863602 8.90762426447122 9.1257431455782 9.01021903676027 8.60677069185976 8.32069467043722 0.140876470949948 0.134190996681252 0.150179451810362 0.136241511289882 0.134491233415992 0.134777348521059 0.139431810056260 0.136161624736228 0.146194705377330 0.134583708886919 0.130796206276085 0.130796206276085 0.134564785664080 0.136701228650171 0.141793627873933 0.130796206276085 0.143169427707881 0.137152459535935 0.132839718395291 5 5 - 25245553 25246192 25245849.364 25245451 25246909 - gene protein_coding_gene TRUE TRUE AT5G62840.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72361.1); similar to Os01g0660900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043776.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain Twin-arginine translocation pathway signal; (InterPro:IPR006311) -0.868275102106496 -9.21962399232909 9.82289327843987e-06 0.00127777547176813 10.3499095299945 16.6802395927783 -0.868275102106496 0.095872099465024 AT5G58040_at 7.50099906045182 7.43697279705793 7.84571171712303 7.98200314151661 8.29388093968321 8.1477517680906 7.4213910533301 7.46234442992127 7.76535171198494 7.91275462483759 7.96938711226775 8.012807185919 7.57376167818597 7.91997560701582 7.63385931560024 7.70050604742058 7.84117547524052 7.99846214010905 7.96244225157012 0.156852857795177 0.150319669526348 0.151065579943428 0.147487232187731 0.149975964297930 0.152073042470336 0.148007105234878 0.145051795470996 0.161896425989536 0.153279447310638 0.150596399978100 0.143593884795011 0.150986063284990 0.158534480778037 0.147250047670608 0.143593884795011 0.150164091251099 0.153602760734768 0.146381726934539 5 0|5 /|+ 23510468 23510877 23510683.5 23505974 23511226 + gene protein_coding_gene TRUE TRUE AT5G58040.1 ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]); RNA binding Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to putative Fip1 motif containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77079.1); contains InterPro domain Fip1; (InterPro:IPR007854) -0.662927212708103 -9.17846759958064 1.01741284813769e-05 0.00131514095326800 10.3265383985075 15.6170942049055 -0.662927212708103 0.0369971398471431 AT5G64580_at 6.63548955039137 6.57381421450488 6.62606461289277 6.48711520304178 7.00428606519068 6.74136262456263 7.47080540667084 6.92711979074676 6.89768021201818 6.97089028250913 7.03122228531154 7.4889314980068 7.09642456902075 7.36391114502169 7.67405932073978 7.70417037501511 7.3747118335079 6.94117086449194 6.83627317592565 0.168277205777603 0.164198527074282 0.171166590979785 0.168225464359117 0.163765023095837 0.16957275664017 0.169428095653499 0.171472145691667 0.172749562907656 0.167269979036846 0.166995246933249 0.163170425350825 0.168709999708639 0.188211675657492 0.174500802466991 0.170514944816928 0.172806197446818 0.172965495514876 0.163170425350825 5 0|5 /|- 25834627 25835326 25834962.667 25834318 25838756 - gene protein_coding_gene TRUE TRUE AT5G64580.1 AAA-type ATPase family protein similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to cell division protein [Cyanidium caldarium] (GB:NP_045094.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.911548975980105 -9.11512069177287 1.07422058137995e-05 0.00136285817258998 10.2902497669669 13.9262270801038 -0.911548975980105 0.107772016030883 AT5G15390_at 6.49905476288388 6.61565217683337 6.48689181836087 6.79342757607339 7.1117551558193 6.75990758312441 6.92375552411477 6.81820772031838 6.5837478740805 6.78108382698019 6.94205908440843 7.05907973054024 6.87490535830162 7.04908636595184 7.65988439152862 6.87311427315325 6.78365924471125 6.85675367341556 6.52076431679685 0.163749583844008 0.164004502446177 0.17850570161752 0.171370569583254 0.166360709691867 0.173097931462957 0.169551505199043 0.172612583476657 0.17820538805792 0.166906421957842 0.165743780829258 0.162599393927747 0.169676575644425 0.172256051890354 0.16805635516592 0.162599393927747 0.175456978860145 0.164803429325692 0.168321560967859 5 5|0 +|/ 4995894 4997203 4996476.5 4995148 4997406 + gene protein_coding_gene TRUE TRUE AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein similar to tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] (TAIR:AT2G19870.1); similar to putative rRNA methylase [Oryza sativa (japonica cultivar-group)] (GB:BAC83213.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) -0.81263635425287 -9.10350411075568 1.08501404915865e-05 0.00136810668710249 10.2835532252995 13.5715064252930 -0.81263635425287 0.085218867748767 AT5G48930_at 9.59790790514068 9.90780176034855 9.88259103204078 9.98197478376742 10.2053445441379 10.0365383073134 10.8953291605735 11.0725042562121 11.5248248967783 11.2700583145490 11.6367022277444 11.6587107983365 11.2835364036770 11.5221005405797 11.4669855826188 11.4230085617312 10.8595557835438 11.4664038650623 11.3490001779575 0.0720779809982453 0.0668019661255685 0.0694774255796868 0.0670472798610189 0.0661056994546333 0.067006097510808 0.0665600445724625 0.069271189889387 0.0732458065144806 0.0668871259489025 0.067943270084428 0.0652883203673214 0.0669987197112543 0.0695180148144503 0.0681124462555384 0.0652883203673214 0.0737383759224322 0.0674674404859048 0.0683375705249597 5 5 - 19853911 19854428 19854153.182 19853525 19855388 - gene protein_coding_gene TRUE TRUE AT5G48930.1 transferase family protein At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G57840.1); similar to hydroxycinnamoyl transferase [Nicotiana tabacum] (GB:CAD47830.1); similar to Alcohol acyl-transferase [Prunus mume] (GB:BAE48668.1); similar to hydroxycinnamoyl transferase [Coffea arabica] (GB:CAJ40778.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.750817549011476 -9.04142700781863 1.14476425956396e-05 0.00141125252269395 10.2475459063193 21.5954589354451 -0.750817549011476 0.0704648951208259 AT5G63380_at 6.30221456529122 6.36553145563544 6.52598517693291 6.64567129489517 7.02691798918289 6.85601583907729 7.170807026135 7.33095427311838 7.27152343824547 7.07264050588277 8.0210775980942 8.0062647694142 7.53095869496909 7.87219995115478 7.50625366740877 8.28227226128771 7.15224439832057 7.80359564994316 6.78074108812822 0.194897262530355 0.185332861660764 0.196830766302689 0.200135537825147 0.185332861660764 0.186323998243281 0.187972144791575 0.187522953681159 0.197896472162013 0.187698404069658 0.190766097483417 0.196002986365346 0.187851104055140 0.198427694975638 0.196452556091584 0.185332861660764 0.196137415922110 0.196449247162432 0.188017515810471 5 5|0 -|/ 25404840 25406000 25405559.333 25404637 25407289 - gene protein_coding_gene TRUE TRUE AT5G63380.1 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to putative 4-coumarate:coenzyme A ligase [Oryza sativa (japonica cultivar-group)] (GB:BAD82768.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.675994522185537 -9.0325877912764 1.15356429285162e-05 0.00141125252269395 10.2423882006362 14.1847588948216 -0.675994522185537 0.0468171179359523 AT5G40490_at 5.24120705894303 4.99125045705324 5.36864818304556 5.46833185486284 5.0328075998406 5.4554149528224 5.32003160816087 5.11812332283802 5.82023538702715 5.6911498684536 5.95560338241889 5.54428588087892 6.06612061966543 6.14935556832115 5.93313215863226 5.72450826693033 5.98631516275586 5.97532543223686 5.82289321215563 0.154096281123081 0.160401044165261 0.154946437835830 0.151798472152316 0.152255526373664 0.156999669547168 0.152831976267368 0.161556486631728 0.152284953182605 0.152120098514986 0.152232976761082 0.155773057507424 0.163898230362485 0.155526755201617 0.151249333019922 0.153453977548115 0.152672131280639 0.163545065819965 0.152626641602455 5 5 + 16244083 16244624 16244338.091 16242604 16244937 + gene protein_coding_gene TRUE TRUE AT5G40490.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G13224.2); similar to Os02g0221500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046322.1); similar to putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa (japonica cultivar-group)] (GB:BAD17623.1); similar to Os08g0320100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061525.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.837121019213673 -8.99681564830153 1.18994976971622e-05 0.00144715194660920 10.2214366666018 11.0969386954585 -0.837121019213673 0.093478207115362 AT5G51100_at 5.39206167474037 5.13208450482073 4.40731896752903 4.79022460032768 4.59108184555295 4.70085691031477 4.741741236471 4.8030772211287 4.07166830594325 4.74174427079001 4.56791159322117 5.12992520073837 5.00291514394512 5.07983701019196 5.6597423948161 4.84121006883794 5.09049327699713 4.82978029631281 4.47247751216544 0.261411880509712 0.262564644090411 0.262702756411207 0.266953795432042 0.259327094057552 0.272468738050567 0.267468782506535 0.266802467645117 0.271285765456294 0.265875353957042 0.261058361060409 0.262712638300758 0.26287963856359 0.269597607068549 0.263889008667860 0.259327094057552 0.265667471037395 0.270220187190903 0.262961708417515 5 5|0 -|/ 20790980 20791874 20791329.429 20790522 20792927 - gene protein_coding_gene TRUE TRUE AT5G51100.1 FSD2 (FE SUPEROXIDE DISMUTASE 2); iron superoxide dismutase Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. similar to FSD1 (FE SUPEROXIDE DISMUTASE 1), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT4G25100.2); similar to Fe-superoxide dismutase 1 precursor [Lotus corniculatus var. japonicus] (GB:AAS92464.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -0.793108432133964 -8.98365165450763 1.20365743089441e-05 0.00145521173545910 10.2136948324602 9.54673432149339 -0.793108432133964 0.082997262194525 AT5G56040_at 5.21569423074029 5.64148131211401 5.02176612233755 5.18276480357292 5.58020271609667 5.40715613268516 5.60516272294137 5.70014899749562 6.2374992459323 5.71043342829916 7.01178184509772 6.83976868770246 6.59478792958319 7.12561874424019 6.82038313744578 7.32461017138885 5.32917760900078 6.63945314119174 6.14918938249857 0.181114869095208 0.168576062313094 0.167367661047873 0.171914305032006 0.169314072565507 0.178725878777591 0.180272014963882 0.171247923773079 0.186432721557461 0.178472401242634 0.172592487498846 0.167251944858954 0.170113553341155 0.182122016933449 0.171253616163910 0.172472208612439 0.177853339375770 0.179293529642832 0.17062852148058 5 5|0 +|/ 22714949 22715601 22715326.3 22712104 22715854 + gene protein_coding_gene TRUE TRUE AT5G56040.1|AT5G56040.2 leucine-rich repeat protein kinase, putative|ATP binding / protein serine/threonine kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G26540.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1); similar to putative receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD10022.1); similar to putative Receptor-like protein kinase precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD46328.1); similar to CLAVATA-like kinase [Triticum aestivum] (GB:CAJ19346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G26540.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1); similar to putative receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD10022.1); similar to putative Receptor-like protein kinase precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD46328.1); similar to CLAVATA-like kinase [Triticum aestivum] (GB:CAJ19346.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.803142956818253 -8.9681924655051 1.21997846069078e-05 0.00146631832165997 10.2045812750029 11.7908329683061 -0.803142956818253 0.085864193790258 AT5G14640_at 6.30889798885276 6.83394845514951 7.07981157707623 6.91246842040826 7.69443261881278 7.3778933716349 7.99648058679392 8.15922422849912 6.0597244404307 6.57521363907894 6.59079948643749 7.11011670165027 7.36589557433865 7.43762733509173 5.3471309839745 6.83517272961866 6.57870358283467 6.63114236697504 6.7071104094537 0.178329126022213 0.180647433433341 0.175285747271452 0.179947607296697 0.189023200145026 0.204558224603677 0.198179962749424 0.193766857809455 0.185742014988637 0.178494094650981 0.175285747271452 0.186144427985833 0.191273431036076 0.181582261166401 0.189779155573441 0.183411482668968 0.197622441076100 0.175303463731818 0.177396213832812 5 5|0 -|/ 4719359 4720366 4719741 4719080 4722282 - gene protein_coding_gene TRUE TRUE AT5G14640.1 protein kinase family protein Identical to Shaggy-related protein kinase epsilon (EC 2.7.11.1) (ASK-epsilon) (ASK5) [Arabidopsis Thaliana] (GB:Q8VZD5;GB:Q9LYJ6); similar to ATSK11 (Arabidopsis thaliana SHAGGY-related kinase 11), protein kinase [Arabidopsis thaliana] (TAIR:AT5G26751.1); similar to ATSK12 (Arabidopsis thaliana SHAGGY-like kinase 12), protein kinase [Arabidopsis thaliana] (TAIR:AT3G05840.1); similar to shaggy-related protein kinase theta / ASK-theta (ASK8) [Arabidopsis thaliana] (TAIR:AT4G00720.1); similar to protein kinase MSK-3 (EC 2.7.1.-) [similarity] - alfalfa (GB:S37642); similar to Glycogen synthase kinase-3 homolog MsK-3 (GB:P51139); similar to Shaggy-like kinase [Triticum aestivum] (GB:BAF36565.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.91964752363165 -8.93428585803826 1.25663914069478e-05 0.00149292052183209 10.1845093502363 13.8876062016216 -0.91964752363165 0.113527593812773 AT5G15910_at 7.47198966521294 7.20405244773131 7.8387254458582 7.89889697082848 7.77038230369332 7.57668174176853 8.04787052892085 7.97156718148629 7.60156935478284 7.73395559459899 8.02887151116846 8.1949761235735 7.778474795188 8.24451605517487 7.8221520875472 8.24066687913403 7.64408275304869 8.00070675425956 7.43480550884753 0.127863924849490 0.123980733260797 0.125529689173712 0.127350070046819 0.123239000739977 0.126984912475356 0.125429747220696 0.120247550234983 0.137224976676789 0.122207600991023 0.123267015260181 0.119845025343449 0.128063335243183 0.12658771987779 0.126960641839521 0.119238574333793 0.123057909780394 0.126706245680627 0.122343900498913 5 5|0 +|/ 5194176 5195167 5194905 5193114 5195399 + gene protein_coding_gene TRUE TRUE AT5G15910.1 dehydrogenase-related similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT5G10730.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96868.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.699902677052332 -8.86158065692442 1.33942666698653e-05 0.00158212903723052 10.1410814370398 15.5147287970024 -0.699902677052332 0.0596356197884584 AT5G48880_at 9.24361953087498 9.19035860090976 9.08501300943952 8.99791059254982 9.20617870620607 8.88209474066574 9.71260729285324 9.57402353993596 8.50684135343872 9.0278384895727 9.25883654922573 9.44961063013648 9.09580695750613 9.22943549258539 8.93256731367385 8.95813400436639 8.96758529282906 9.20198212883736 8.31963046428256 0.127948796270196 0.126843727750795 0.126338045571258 0.131424203409773 0.121285774502091 0.133655228885637 0.128756846947261 0.131249287248689 0.124623466171831 0.129043924978253 0.125299294556399 0.126045810149435 0.123263817450994 0.121233093623819 0.120197715362710 0.124776825959277 0.138581595348846 0.132073615555655 0.126820483972571 5 0|5 /|- 19831816 19832529 19832155.333 19831628 19835123 - gene protein_coding_gene TRUE TRUE AT5G48880.1|AT5G48880.2|AT5G48880.3 KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2); acetyl-CoA C-acyltransferase Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. Identical to 3-ketoacyl-CoA thiolase 5, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 5) (Acetyl-CoA acyltransferase 5) (Peroxisomal 3-oxoacyl- CoA thiolase 5) (KAT5) [Arabidopsis Thaliana] (GB:Q570C8;GB:O65339;GB:Q9S774); similar to PED1 (PEROXISOME DEFECTIVE 1), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT2G33150.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); contains InterPro domain Thiolase; (InterPro:IPR002155)|Identical to 3-ketoacyl-CoA thiolase 5, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 5) (Acetyl-CoA acyltransferase 5) (Peroxisomal 3-oxoacyl- CoA thiolase 5) (KAT5) [Arabidopsis Thaliana] (GB:Q570C8;GB:O65339;GB:Q9S774); similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative [Arabidopsis thaliana] (TAIR:AT1G04710.1); similar to PED1 (PEROXISOME DEFECTIVE 1), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT2G33150.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to Thiolase [Medicago truncatula] (GB:ABE94567.1); contains InterPro domain Thiolase; (InterPro:IPR002155) -0.701333101556787 -8.72549487026267 1.51108309070267e-05 0.00171586051058356 10.0583509820797 18.1138998676342 -0.701333101556787 0.0635040897692658 AT5G15310_at 4.65117005920813 5.61623613797436 3.77422953553615 3.74006637953856 5.95712326660579 5.08497654878214 6.50003699463162 6.96953405327734 5.78874832334556 5.9131348256797 6.18875211717766 7.4041048445734 7.21265555367809 6.17747603768679 5.66688348869959 6.89957169308074 5.19038954423433 5.78891788794342 6.56789607804001 0.265551366223347 0.267509278861924 0.287362775604206 0.278956978760192 0.267023536567502 0.274733179984794 0.269497296869615 0.271443778485741 0.278651864086692 0.265551366223347 0.265551366223347 0.269288384943921 0.271302256710331 0.276300893331924 0.272781386671282 0.265551366223347 0.294680263946533 0.269038881519028 0.267655669319939 5 5 + 4975439 4976082 4975756.636 4974674 4976230 + gene protein_coding_gene TRUE TRUE AT5G15310.1|AT5G15310.2 AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor|AtMIXTA/AtMYB16 (myb domain protein 16) Member of the R2R3 factor gene family. similar to MYB106 (myb domain protein 106), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G01140.1); similar to protein 1 [Petunia x hybrida] (GB:CAA78386.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to MYB106 (myb domain protein 106), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G01140.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE79445.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.54171201848466 -8.70922774337198 1.53317974582975e-05 0.00173138596938482 10.0483339768443 11.4896817743973 -1.54171201848466 0.23939077948239 AT5G06980_at 9.1298138517714 9.39702043316655 9.41846303001548 9.71100438938002 10.0691051506914 9.95627344854614 10.3929645236195 10.3961794481371 9.95309440837975 10.3292960695172 10.4266013260762 10.3427767501416 10.5404324416470 9.99292330684482 9.90490534010228 10.394699656405 10.0529704740652 9.95584303152799 10.5487794288871 0.108521163464152 0.102799303879083 0.106043455457835 0.10405145288385 0.100159019724268 0.102146836784468 0.102070099695586 0.101096001247483 0.114921019756788 0.098788513370129 0.104680336518676 0.100224283885999 0.101188611227682 0.103116007429356 0.108709012434333 0.098788513370129 0.101096405143749 0.0994806925170701 0.098788513370129 5 5|0 +|/ 2168043 2169072 2168561.9 2167537 2169392 + gene protein_coding_gene TRUE TRUE AT5G06980.1|AT5G06980.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12320.1) -0.721566370172194 -8.65482257886237 1.60971608285136e-05 0.00179805788377394 10.014631505971 20.0480783726389 -0.721566370172194 0.0712937188153143 AT5G18240_at 7.77405496236269 7.92981424906423 8.31490632676047 8.36140289831313 8.5002159680816 8.328327903868 8.28926806768554 8.41703178912433 8.18410471927073 8.08949417265516 8.002114732588 8.1692237559448 8.52081965559799 8.13999294140037 7.96950086715661 8.78307701218967 8.76839538614674 8.48046576016949 8.16671735729138 0.127670349024695 0.125117117476444 0.134304754250877 0.128262374011062 0.128523801881581 0.126342435999654 0.128971093524644 0.128599026148616 0.127319558082586 0.124440903072063 0.125216387543352 0.122650107997601 0.127851956094560 0.133182394070321 0.129019493088372 0.125649015526664 0.127725215904598 0.123935211972034 0.127335329619020 5 5 - 6028645 6029191 6028942 6028287 6030804 - gene protein_coding_gene TRUE TRUE AT5G18240.1|AT5G18240.2|AT5G18240.3|AT5G18240.4|AT5G18240.5 MYR1 (MYB-RELATED PROTEIN 1); transcription factor|MYR1 (MYB-RELATED PROTEIN 1) Encodes MYR1 (MYR1). similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G04030.2); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83815.1); similar to Os05g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055886.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G04030.1); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83815.1); similar to Os05g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055886.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.63728992695636 -8.5249659037437 1.81003581782137e-05 0.00198938010712423 9.93292408120918 16.4898631941433 -0.63728992695636 0.046529492201281 AT5G42070_at 9.56397399704473 9.54394305521952 9.62517482347768 9.70164396572157 9.81236879533439 9.65496955071377 10.4799345677936 10.6626838831757 10.2212887989867 10.2664514022791 10.6634272264573 10.6700363710660 10.5402549997805 10.7256665596584 10.8469941662077 10.6685819018152 10.1591414875237 10.4954496957375 10.0580030155254 0.0716441810584872 0.069497699868073 0.0732137266334786 0.0719434874417456 0.0719862967104907 0.0763122458252796 0.0703368597407217 0.0705498455124968 0.0743614561278159 0.0699151133416311 0.070480534128368 0.0713965834232415 0.070549797948796 0.0724520945194528 0.0701200434776296 0.0705970450912163 0.0758005301360564 0.07247448686057 0.069497699868073 5 5|0 -|/ 16836566 16837304 16836827.778 16836212 16837423 - gene protein_coding_gene TRUE TRUE AT5G42070.1 similar to Os01g0235100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042519.1); similar to Conserved Cys-containing protein (IC) [Ostreococcus tauri] (GB:CAL52359.1) -0.62841305763227 -8.49024873685004 1.86815129997527e-05 0.0020208340641621 9.91077347818172 20.2696408081241 -0.62841305763227 0.0439233747000397 AT5G23310_at 6.49783840203116 6.15215226214228 5.71606407967287 5.67517842703723 6.33011833598553 6.08571386969113 5.70349366862383 5.62699025538809 4.37785481890841 4.49168892825599 4.59298480323702 5.54764146911168 4.70489983981964 4.62570658028451 6.12351466747776 5.05861838769586 5.40486536002907 4.68921253398996 4.75525980447247 0.228329427607175 0.224342329319406 0.227158134054320 0.223785435397480 0.224996740944482 0.234436806833146 0.224485988857537 0.222205270819804 0.22570005400329 0.229407055921980 0.223614746901605 0.221845482349375 0.223886828802863 0.225915526357606 0.230321113312572 0.226599359992214 0.229747079332984 0.223735306157836 0.226571190918184 5 0|5 /|+ 7851472 7852211 7851857.375 7850526 7852535 + gene protein_coding_gene TRUE TRUE AT5G23310.1 FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase Fe superoxide dismutase similar to FSD2 (FE SUPEROXIDE DISMUTASE 2), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT5G51100.1); similar to FeSOD [Gossypium hirsutum] (GB:ABA00456.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -0.719084082139755 -8.48094282227957 1.88407727036465e-05 0.00202739117366571 9.90481383692111 10.7909594821138 -0.719084082139755 0.0747862210488547 AT5G52320_at 6.394657313389 6.66111250367718 5.98469926147884 6.11741659973111 6.07883583071358 5.67473314372787 7.65620715820265 7.76753711517125 5.94244911527732 6.47249843138737 8.1696999979054 8.57113501924403 7.3622447436747 7.7723314962365 7.97702992242836 7.27260452106538 6.89380041278488 7.90082231989515 5.69794759015168 0.216048531285045 0.207771140058061 0.208793181556089 0.205121099256298 0.214628792465185 0.218464146130758 0.21408102232078 0.209867792073076 0.220972716594629 0.206710431766767 0.217073406971828 0.222408536448978 0.206653725878493 0.213820150977829 0.215497853338006 0.206078001982909 0.209505110934500 0.212224929902117 0.210168518904236 5 5 - 21262363 21262825 21262654.364 21262204 21263908 - gene protein_coding_gene TRUE TRUE AT5G52320.1 CYP96A4 (cytochrome P450, family 96, subfamily A, polypeptide 4); oxygen binding member of CYP96A similar to CYP96A3 (cytochrome P450, family 96, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G65340.1); similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT1G57750.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Os01g0183600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042228.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93891.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.770239304520464 -8.46802936448644 1.90642609579661e-05 0.00204075539784199 9.89652827997821 13.4306949989746 -0.770239304520464 0.0889685456823227 AT5G20150_at 7.9867907918695 8.36729567275702 7.27112147345346 7.27870400872252 8.04368245250884 7.01979416512283 7.90770491262017 7.96321467311973 6.36329204929042 6.2934600941808 6.54868287150531 7.08195618764111 7.09979799123641 6.36463334331957 5.5338320658656 6.6274031658727 6.56606910747624 5.919926167391 6.00786625943372 0.291806084259936 0.281437150135096 0.29107428316363 0.282509522984926 0.278469557235898 0.286248901216016 0.280720160282918 0.288695670867955 0.283923582199427 0.272571765954149 0.272571765954149 0.272571765954149 0.276322613755272 0.287418306481017 0.281431183037493 0.276899771673153 0.289613783436548 0.285604589776009 0.274010841957474 5 0|5 /|+ 6803036 6803293 6803173.9 6802374 6803627 + gene protein_coding_gene TRUE TRUE AT5G20150.1 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G26660.1); similar to Os06g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058013.1); similar to IDS4-like protein [Solanum lycopersicum] (GB:CAG29394.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331) -1.23381274178354 -8.45282981245612 1.933107287657e-05 0.00204148712887568 9.88675263954813 14.0744520588585 -1.23381274178354 0.189277031895650 AT5G58480_at 4.75435676932573 5.03561312226748 3.99657756128996 4.36561750725451 4.85752183748591 5.41634875276764 5.16785770759118 5.86460032502722 5.28366280332473 6.04526481263205 5.78246325974229 6.43067395390133 5.73335647745553 5.7781656537005 7.07012794473974 5.8307260344115 5.45458230384578 6.03471981686095 6.15713846243278 0.198224665466447 0.202317578806290 0.20490471020831 0.207412790315673 0.199049336998677 0.211261044424995 0.199640395299949 0.208443089669066 0.210444298078219 0.200722671915263 0.198130252153692 0.198527975815382 0.203923388560439 0.204971605576693 0.203156006085857 0.204861862748557 0.208696279957275 0.206044115535802 0.203910811874992 5 5 - 23658460 23659023 23658726.182 23658368 23660079 - gene protein_coding_gene TRUE TRUE AT5G58480.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 9 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 9) ((1->3)-beta-glucanase 9) (Beta- 1,3-endoglucanase 9) (Beta-1,3-glucanase 9) [Arabidopsis Thaliana] (GB:Q9FGH4); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G17180.1); similar to Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95444.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.15695148302035 -8.45068337453255 1.93690825032859e-05 0.00204148712887568 9.8853701193308 10.8538320095656 -1.15695148302035 0.174178759504417 AT5G43740_at 4.74040978449902 4.88271377534589 4.80839806028489 4.72949013117467 4.43427538968967 4.56876748862596 4.3250901640055 5.05017398516751 5.29147921893308 5.17329333995309 5.36668514118716 5.69015782490704 5.52726693053451 5.72478518438026 4.83721929043522 5.35210176049922 5.22943579514632 4.86514213889731 5.27845560382296 0.220766709373792 0.220415654165670 0.215406139460347 0.215682744874020 0.223265374740566 0.222761240348736 0.212099258558839 0.212099258558839 0.22250501221661 0.220868653975177 0.214908157833881 0.220557201168427 0.221824056573742 0.214074983853292 0.222130088101586 0.216409971460614 0.2231931728339 0.222790718846454 0.222488470993911 5 5 + 17585298 17585776 17585583.091 17581965 17586029 + gene protein_coding_gene TRUE TRUE AT5G43740.1|AT5G43740.2 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance protein At5g43740 [Arabidopsis Thaliana] (GB:Q9FG90); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G43730.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G15890.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G51480.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.94506125581635 -8.43518936033514 1.96459150367091e-05 0.0020601004576854 9.87537548237753 9.97833583692485 -0.94506125581635 0.130689108410693 AT5G12470_at 10.7894002300584 10.8085595800190 10.8059890294853 10.9171197105488 10.6661890562297 10.5736987615890 11.3875458605903 11.4946787248555 11.1400155735884 11.1948695176080 11.4745360188024 11.4842467033863 11.5103368710895 11.6399502071182 11.2100323462485 11.6531394559817 11.2893263672049 11.5107382585268 11.0965122254626 0.0744650789267968 0.071035830314771 0.0794974653171804 0.0743565982430455 0.072734648746341 0.0791903329831211 0.0750641200869994 0.0731873391968572 0.0758278653719534 0.0702547545750103 0.0699708289665323 0.0708321205213521 0.070207520710075 0.0702282185926459 0.072533468524386 0.0699708289665323 0.0761510623777297 0.0699708289665323 0.0714315690974437 5 0|5 /|- 4045094 4045958 4045352.571 4044625 4047439 - gene protein_coding_gene TRUE TRUE AT5G12470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40400.2); similar to Trimeric LpxA-like [Medicago truncatula] (GB:ABE84885.1); similar to Os01g0957200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045446.1); similar to Os05g0388600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055430.1) -0.595899838636227 -8.3975660546389 2.03364977660971e-05 0.00212169105607879 9.8509963777585 22.2380663112209 -0.595899838636227 0.0313171637822835 AT5G15880_at 5.58365825178163 5.83067844787209 6.1688595561429 5.98948842066786 6.63521697366917 6.33474441640933 5.94757627943026 5.66384984118141 6.23872569451483 6.56464904184944 6.71091949681764 6.6998331798962 5.8801604629731 6.6706695438584 6.66992575497034 6.25037195974492 5.99629049373899 6.67472443623294 6.42286400039507 0.226765566332796 0.203946810014305 0.212927143434524 0.225478688050059 0.207923642049342 0.224482986942996 0.203946810014305 0.215933517014137 0.233105828844198 0.210484172636992 0.204492959004514 0.210703641011441 0.208863677656015 0.212942148142493 0.20425443752489 0.20780844488361 0.2139505708083 0.213104371084355 0.209701669635992 5 5|0 +|/ 5186473 5187425 5187024.6 5185781 5187709 + gene protein_coding_gene TRUE TRUE AT5G15880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32240.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96950.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.76170869421348 -8.37656704376699 2.07335647739559e-05 0.00215165300090349 9.83732161407367 12.4456881042021 -0.76170869421348 0.088913295427883 AT5G23060_at 11.4484372918453 11.5234413111699 11.5746407509656 11.6063225818842 11.8259558688669 11.663084283518 12.3608016914348 12.3551123435893 12.4191269940034 12.4460242549511 12.4546188272078 12.632649217956 12.3305397598400 12.4065627864682 12.3322488047310 12.8111007526959 12.3931034956358 12.5096913474691 12.4356959430019 0.0749929885454422 0.0715434549650606 0.0758440253782607 0.0730305894633366 0.0721543286166152 0.0804283919568411 0.0730869688028826 0.073798141906472 0.0808117289444238 0.0726404852492325 0.0734539909782408 0.0709945179540288 0.0728907025578502 0.0738616098603735 0.0750642119957005 0.0709945179540288 0.0754393987955523 0.0738445680208726 0.0736410220657952 5 0|5 /|- 7736771 7737322 7736953.571 7736593 7738538 - gene protein_coding_gene TRUE TRUE AT5G23060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59780.1); similar to Rhodanese-like [Medicago truncatula] (GB:ABE85110.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.594403960545596 -8.371374658179 2.08330617692031e-05 0.00215165300090349 9.83393275616617 24.2534395677355 -0.594403960545596 0.0315267713683701 AT5G55280_at 8.32072718478203 8.04949886757858 8.10195820583701 7.99048637672176 8.07370427402246 7.92543322046254 8.71842472058885 8.32222907578078 7.90601350607062 8.3722584629563 8.78929441065341 8.9887640283279 8.52773245181941 8.7920797223003 9.16681244644386 8.8904038668481 8.65541874216225 8.37485893829237 8.43099975558447 0.119804575037379 0.119661986624381 0.114648724754896 0.11730948838542 0.116342697734246 0.128108168971947 0.114574654870186 0.115511636781468 0.127154127023554 0.126438973163270 0.117117381880325 0.113126459819551 0.120431690566368 0.119492261968594 0.120618851610121 0.113126459819551 0.121671230119968 0.119627284989222 0.120572501070734 5 5 - 22437987 22438736 22438240.727 22437881 22439875 - gene protein_coding_gene TRUE TRUE AT5G55280.1 FTSZ1-1 (FtsZ1-1); structural molecule Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division. Identical to Cell division protein ftsZ homolog, chloroplast precursor (FTSZ) [Arabidopsis Thaliana] (GB:Q42545;GB:Q9FLN6); similar to FTSZ2-2 (FtsZ2-2), structural molecule [Arabidopsis thaliana] (TAIR:AT3G52750.1); similar to cpFtsZ (GB:AAA82068.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.758906577588013 -8.338924910284 2.14669376173018e-05 0.00218419260929597 9.81268630091313 16.6926049827516 -0.758906577588013 0.0890762741515545 AT5G40390_at 8.48722597572733 8.5817181493026 8.10594607474781 8.37514914394765 8.39124987983276 8.24946132763129 9.3920823871795 9.4076499712662 7.72719846902414 8.19711217852562 8.92459856935038 9.3822416126666 9.57405064041568 9.0197416164406 8.86167875575269 9.2546183951125 9.00600152473693 9.10564162565192 8.32651955603293 0.115863800940264 0.115033877971531 0.116422595908266 0.114714854747047 0.124439667895778 0.113792950572854 0.117154770559607 0.120036795425153 0.122797851165348 0.119120104358898 0.122908759682736 0.119104075325981 0.117769587876577 0.112898010396134 0.116256578289342 0.112293546390133 0.116724415462224 0.113387765931343 0.114704042217629 5 5 + 16181835 16182275 16182031.545 16178743 16182585 + gene protein_coding_gene TRUE TRUE AT5G40390.1 SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged. similar to DIN10 (DARK INDUCIBLE 10), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G20250.3); similar to raffinose synthase [Cucumis sativus] (GB:AAD02832.1); similar to raffinose synthase [Pisum sativum] (GB:CAD20127.2); similar to Raffinose synthase [Medicago truncatula] (GB:ABE79689.1); contains InterPro domain Raffinose synthase; (InterPro:IPR008811) -0.640682913280637 -8.2709872872977 2.28641455778374e-05 0.002292309868345 9.76782299412898 17.2361511938928 -0.640682913280637 0.0552002079377802 AT5G22390_at 7.78171638309119 8.00328876342255 8.07049276905152 8.31018409054577 7.94980278267439 8.08386978410403 9.09815521812946 9.3603306319665 8.49037933983552 8.48400376129046 9.2408701584443 9.36404184304874 9.20383385934793 9.3087458697554 8.56463438907627 9.75696269517096 9.19519644882128 8.9772017844265 8.49552495706055 0.132415543713049 0.134074452354986 0.138019845630745 0.135001174606768 0.132331433575003 0.140700849815343 0.130246568730934 0.133269668978374 0.141135249716829 0.140026339973595 0.132293742599346 0.136271808408020 0.129965811136517 0.132472311613533 0.136710425506115 0.140135473557019 0.145432841373858 0.135388151632359 0.145644808735956 5 5 - 7418434 7418959 7418697.727 7418119 7419252 - gene protein_coding_gene TRUE TRUE AT5G22390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19260.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28434.1); similar to Os12g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066192.1) -0.702852001248547 -8.23759423034262 2.35874719620381e-05 0.00235334925737445 9.74558087383122 17.1779326697433 -0.702852001248547 0.0760764044212372 AT5G56380_at 5.4915346533016 5.31342970865813 5.57349766511003 5.52329373747644 6.43910324907748 5.95660976205768 5.0652909517232 4.93502384890402 5.45856791636201 5.8620276457628 4.81828849874981 5.1119169882584 6.15312209014105 5.91764418576545 5.54392687739192 6.85710559193047 6.1971599277843 5.54194471622121 6.4583897812373 0.193749839981873 0.183246479827288 0.199294359652936 0.18675074390727 0.195696701174454 0.192317466024309 0.186779734696593 0.185171005849176 0.197658773405827 0.185673999721506 0.193187672491131 0.183538947504894 0.187588317327052 0.188916510053155 0.186109975612741 0.183246479827288 0.203037240750863 0.194781829542306 0.183246479827288 5 5 - 22856071 22856817 22856437.636 22855898 22858241 - gene protein_coding_gene TRUE TRUE AT5G56380.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G32375.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.745599950158183 -8.06395459162712 2.77798278384424e-05 0.00270594710617355 9.62786475342132 11.3842064756974 -0.745599950158183 0.0922255192876093 AT5G16715_at 6.00018853651972 6.18843266429336 6.5406057162263 6.35824403321147 7.14615134759418 6.3711955139861 7.25354245929973 7.08205018130072 5.65424576042706 6.90183996393628 6.13490962748159 6.81650581205319 6.49788729973033 6.27213475753143 7.38602886477178 7.38415811119146 7.27192493840332 6.67383623550178 7.25160608340834 0.190321217018190 0.188630997556246 0.182239075248212 0.184033834738658 0.189595435150166 0.194383302032339 0.191115687651124 0.192083929630293 0.192175498716111 0.18432962970171 0.195272947644812 0.187747532450956 0.189117060515193 0.190615566883724 0.187280599204463 0.187732674947225 0.195100404325315 0.192173823516586 0.182239075248212 5 5|0 +|/ 5491823 5492933 5492561.3 5485356 5493523 + gene protein_coding_gene TRUE TRUE AT5G16715.1 EMB2247 (EMBRYO DEFECTIVE 2247); ATP binding / aminoacyl-tRNA ligase similar to TWN2 (TWIN 2), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G14610.1); similar to putative valyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAC83606.1); similar to valyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] (GB:ZP_01531202.1); similar to Isoleucyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL55105.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Valyl-tRNA synthetase, class Ia; (InterPro:IPR002303); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.957068695396365 -7.99022448301035 2.98033307053595e-05 0.00286310144474419 9.576817613984 13.3211698774324 -0.957068695396365 0.144649040749751 AT5G15450_at 10.5388510173761 10.5935389064961 11.1317758435844 11.0478268484226 10.9533995088678 10.8175551375678 11.6853650063692 11.7033264354764 11.0926292457112 11.3328505847813 11.3246210935607 11.2604885653718 11.2787746735793 11.4284481684267 11.2296067208904 11.4276684388322 11.1006352305014 11.4199116118532 11.0486369092442 0.0714420342187113 0.0669533477670018 0.0681841980609561 0.069124408930314 0.0670738527164741 0.0696328229605133 0.0682111561466823 0.0662641833821915 0.0726603659827768 0.0700900219139988 0.0662641833821915 0.0679724954063772 0.066542069283242 0.0715031953485767 0.0689480048589609 0.0662641833821915 0.0690036987242883 0.0666725569234373 0.0684084780583896 5 5|0 -|/ 5014462 5015311 5014935.4 5014215 5018350 - gene protein_coding_gene TRUE TRUE AT5G15450.1 APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6); ATP binding / ATPase Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. similar to CLPC (HEAT SHOCK PROTEIN 93-V), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT5G50920.1); similar to ATHSP101 (HEAT SHOCK PROTEIN 101), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT1G74310.1); similar to CLPB-M/CLPB4/HSP98.7 (HEAT SHOCK PROTEIN 98.7), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT2G25140.1); similar to ClpB [Phaseolus lunatus] (GB:AAF91178.1); similar to Chaperone clpB 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96724.1); similar to heat shock protein [Solanum lycopersicum] (GB:BAE06227.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Clp, N terminal; (InterPro:IPR004176); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.563869145801589 -7.98995142457794 2.98111205689619e-05 0.00286310144474419 9.57662736615106 22.2923589510813 -0.563869145801589 0.0293757450826183 AT5G55920_at 5.48267541382349 5.42349864072555 5.42269273244118 5.79945235969178 5.13721136904291 4.60672856365787 5.95312995950276 5.34731849795465 5.45271426449426 5.50644065239826 5.70859473420748 6.36819380605843 5.45215402420102 5.58243893891879 5.86150589703772 6.18912601722277 5.7780883570809 5.75275359588801 5.63278738745851 0.205172966457146 0.202703270225776 0.217473939003311 0.212109721585171 0.202703270225776 0.206070101036053 0.215185016287643 0.207521303841699 0.214984387986390 0.209325729773218 0.215144779197334 0.206042458714755 0.212369207383005 0.206091672013266 0.207617300688713 0.208510535579956 0.218120650746662 0.218430360052053 0.210956823275856 5 0|5 /|- 22663168 22663793 22663532.25 22662709 22666673 - gene protein_coding_gene TRUE TRUE AT5G55920.1 nucleolar protein, putative similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Medicago truncatula] (GB:ABE89312.1); similar to Os09g0551300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063867.1); similar to putative proliferating cell nuclear protein P120 [Oryza sativa (japonica cultivar-group)] (GB:BAD12915.1); contains InterPro domain Nop2p; (InterPro:IPR011023); contains InterPro domain rRNA subunit methyltransferase; (InterPro:IPR006174); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) -0.98960512569152 -7.90328903533166 3.24007722663623e-05 0.00306879470579257 9.51579709316565 11.0802156201603 -0.98960512569152 0.154190563499446 AT5G57300_at 5.72845241604163 5.62076925526437 6.06433827184505 5.73607860172727 5.8190084008129 5.94280909253148 5.56084480890484 5.67718776564043 5.32561737460752 5.49655088232705 6.09252422195727 6.20353823670119 6.11741628088673 6.22372981445972 6.01887318515084 6.07501514132884 5.62133586149822 5.77682922992665 5.74079694524687 0.195334514661951 0.191672809527706 0.191672809527706 0.196662025127662 0.191672809527706 0.201321316679631 0.191672809527706 0.198192949258831 0.209887347947974 0.197103090315193 0.196409033139200 0.199779384053280 0.192014607835564 0.191672809527706 0.192893033140445 0.191880649388375 0.199159881667496 0.202313275290266 0.209846051232489 5 5|0 -|/ 23225933 23227131 23226547.5 23225789 23228316 - gene protein_coding_gene TRUE TRUE AT5G57300.1|AT5G57300.2 UbiE/COQ5 methyltransferase family protein|methyltransferase similar to UbiE/COQ5 methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G23360.1); similar to SAM (and some other nucleotide) binding motif [Medicago truncatula] (GB:ABE77912.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain UbiE/COQ5 methyltransferase; (InterPro:IPR004033) -0.640022789692473 -7.8484311116433 3.41677790865512e-05 0.0032213095885733 9.47682338021867 11.5372591502039 -0.640022789692473 0.0666232067343317 AT5G60860_at 7.05902946858477 7.37327762427121 6.4172940988962 6.45451726906891 7.64334599006777 7.40676230606328 7.40545024597893 7.82582735472024 9.42392222046728 7.86934832195507 10.4098381300421 9.3980285580658 9.17813172713087 9.72844914898285 9.93779466999088 8.76640026464619 7.50547129629249 9.39962856187657 8.34423646975844 0.162849988360237 0.170057556724575 0.181159933445318 0.169195956887819 0.163420877373116 0.181587242792079 0.16697484683288 0.158600990402462 0.164208138502175 0.171619777048933 0.158600990402462 0.158600990402462 0.158600990402462 0.160055427541933 0.161304475038250 0.159972464417329 0.166856377441714 0.162394793818015 0.165013051240608 5 5 + 24502033 24502705 24502476.273 24501848 24502931 + gene protein_coding_gene TRUE TRUE AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding similar to AtRABA1g (Arabidopsis Rab GTPase homolog A1g), GTP binding [Arabidopsis thaliana] (TAIR:AT3G15060.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02112.1); similar to Os05g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056333.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.753158828225771 -7.83876795096201 3.44899074427765e-05 0.00322211885668269 9.46992030362157 16.1163397773841 -0.753158828225771 0.0998371269930408 AT5G09820_at 5.911336300027 5.53131482487831 5.81445882018866 5.63070496793116 6.27065127543179 6.47886433317171 6.54686228905222 6.27265838622889 5.81955202702456 5.99002712819962 6.4767009873671 6.39080145728897 6.31831735635373 6.44065323841123 6.67528998731024 6.43681655201172 6.73562783600824 6.1345960179166 5.66473086850782 0.190564095969452 0.186568661572907 0.180977435815709 0.179231660753445 0.182048495822632 0.184176345677809 0.183664301796584 0.196248522485210 0.205948213934598 0.186536926035038 0.190064123407164 0.186549812846451 0.187905647694691 0.185794216737356 0.198524085940611 0.193382035007882 0.181135828936366 0.193059512117892 0.18869324498739 5 5|0 -|/ 3056565 3057231 3056860.875 3055780 3057448 - gene protein_coding_gene TRUE TRUE AT5G09820.1|AT5G09820.2 plastid-lipid associated protein PAP / fibrillin family protein|structural molecule similar to plastid-lipid associated protein PAP, putative [Arabidopsis thaliana] (TAIR:AT4G22240.1); similar to 52O08_10 [Brassica rapa subsp. pekinensis] (GB:AAZ67556.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843)|similar to plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] (TAIR:AT3G26070.1); similar to 52O08_10 [Brassica rapa subsp. pekinensis] (GB:AAZ67556.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.73130780325598 -7.82841682226683 3.48386884969395e-05 0.00323997554629283 9.46251311268593 12.1950416181108 -0.73130780325598 0.0942667143888654 AT5G24020_at 5.516173971415 5.54729903627071 5.76651530986192 5.86210487707738 5.93435360012618 5.59141730316708 5.79487159090178 5.70892681276491 5.53383152306886 5.81230503165962 6.2204000905892 6.57147625424641 6.20115475201386 5.99983183612192 6.9235650605645 6.40309402610043 5.83045177032526 5.86076089356458 5.52754209332736 0.276745721759775 0.276060175534452 0.276060175534452 0.27959889677827 0.284442725412393 0.287524477082988 0.281822523299734 0.282357081646441 0.285112244011589 0.276060175534452 0.276060175534452 0.276060175534452 0.289608265435047 0.276060175534452 0.288345377429567 0.281995484288847 0.282159782123716 0.284244179943066 0.282332431189868 5 5 + 8117247 8117679 8117451.091 8116683 8118033 + gene protein_coding_gene TRUE TRUE AT5G24020.1 MIND (ACCUMULATION AND REPLICATION OF CHLOROPLAST 11) Encodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19540.1); similar to plastid division regulator MinD [Solanum tuberosum] (GB:AAZ23778.1); contains InterPro domain Cobyrinic acid a,c-diamide synthase; (InterPro:IPR002586); contains InterPro domain Septum site-determining protein MinD; (InterPro:IPR010223) -0.628085558276199 -7.81049452263553 3.54518113849333e-05 0.00328214424774599 9.44965703621176 11.6531585050945 -0.628085558276199 0.0636074049091629 AT5G21060_at 6.54970753145114 7.03218051851926 6.43141635450162 6.76056305655557 6.44630613864427 6.39667642140691 6.96926481590893 6.89732425862038 6.45739590664994 6.45023236383767 7.07782676669185 7.9496556028533 7.1653960919957 7.49699246652308 7.54079111113075 7.66637376361691 6.99331175964273 6.83325276560616 6.28711609853807 0.187025512714790 0.183503639351913 0.185100482342101 0.185871735942468 0.189491372226985 0.183355936143998 0.190913846747194 0.185057591369304 0.197333488685592 0.185345638457542 0.185376089996186 0.185624884648713 0.184978682916155 0.189150639741721 0.192569799554459 0.185206314126524 0.192984300619529 0.188753785908927 0.183282257822022 5 5|0 -|/ 7149175 7150968 7149773.7 7148980 7152878 - gene protein_coding_gene TRUE TRUE AT5G21060.1|AT5G21060.2|AT5G21060.3 homoserine dehydrogenase family protein|homoserine dehydrogenase similar to AK-HSDH/AK-HSDH II [Arabidopsis thaliana] (TAIR:AT4G19710.2); similar to homoserine dehydrogenase [Glycine max] (GB:AAZ98830.1); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -0.747292512262272 -7.68553882213308 4.00721132790521e-05 0.00366042857265959 9.35892080772554 13.5547789689591 -0.747292512262272 0.10219845512638 AT5G15810_at 5.75201437026426 5.6104772659989 6.49747992823059 6.2899718959804 6.31266860093068 6.19244505532877 5.8930980785458 5.94198626639691 4.30739367519069 5.25620064138988 5.34505156473435 5.65655266361473 5.32044992046474 4.89450599383845 5.69869947682197 5.3332025730155 5.18857386163449 4.55564433450389 5.284737604617 0.26254276349438 0.247799999593613 0.255910626926286 0.255340306382372 0.257455912346862 0.268210420700589 0.255056903098193 0.248758986887054 0.253894402702545 0.261015649498389 0.256957580463557 0.247799999593613 0.257160667894217 0.260835555212553 0.261339444859668 0.247963521092324 0.2659037471043 0.258215738251299 0.253753804434684 5 5|0 +|/ 5160229 5160946 5160601.444 5157801 5161361 + gene protein_coding_gene TRUE TRUE AT5G15810.1 N2,N2-dimethylguanosine tRNA methyltransferase family protein Identical to Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) [Arabidopsis Thaliana] (GB:Q9LFU5); similar to RNA binding / tRNA (guanine-N2-)-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G02320.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96899.1); similar to Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) (GB:Q9LFU5); similar to hypothetical protein [Cleome spinosa] (GB:ABD96937.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain N2,N2-dimethylguanosine tRNA methyltransferase; (InterPro:IPR002905) -0.579654945682024 -7.680878505271 4.02568183227647e-05 0.00366102940384008 9.35549909789737 11.1605321938651 -0.579654945682024 0.0489276956001156 AT5G49030_at 8.44469997992667 8.17981647091246 8.36265267212425 8.04102532934326 8.68797901424423 8.31297820616447 8.87495652666787 8.64656494905145 8.5947688502139 8.70267369751588 8.74085601333242 9.2900106513284 8.71252304067549 9.02459808661728 9.47715569053955 9.26428877615302 8.76993690219267 8.97513817260071 8.8446416946412 0.110957268050416 0.114295184341101 0.115836666277609 0.120735241372633 0.111813030371570 0.116895587412192 0.10946110210433 0.111170637338061 0.122601697874005 0.115472363316745 0.110665291264992 0.109924926963131 0.113107021408670 0.115090807496249 0.116135066314848 0.110033383705154 0.117608405746332 0.112372130853936 0.116186488412809 5 5 - 19892335 19893750 19893039.636 19892170 19899688 - gene protein_coding_gene TRUE TRUE AT5G49030.1|AT5G49030.2 OVA2 (OVULE ABORTION 2); ATP binding / aminoacyl-tRNA ligase similar to isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G10320.1); similar to isoleucyl-tRNA synthetase [Anabaena variabilis ATCC 29413] (GB:YP_324274.1); similar to isoleucyl-tRNA synthetase [Nostoc sp. PCC 7120] (GB:NP_485116.1); similar to COG0060: Isoleucyl-tRNA synthetase [Nostoc punctiforme PCC 73102] (GB:ZP_00106717.1); contains InterPro domain Zinc finger, Fpg-type; (InterPro:IPR010663); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Isoleucyl-tRNA synthetase, class Ia; (InterPro:IPR002301); contains InterPro domain ValRS-IleRS-LeuRS editing; (InterPro:IPR009008)|similar to isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G10320.1); similar to isoleucyl-tRNA synthetase [Anabaena variabilis ATCC 29413] (GB:YP_324274.1); similar to isoleucyl-tRNA synthetase [Nostoc sp. PCC 7120] (GB:NP_485116.1); similar to COG0060: Isoleucyl-tRNA synthetase [Nostoc punctiforme PCC 73102] (GB:ZP_00106717.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Isoleucyl-tRNA synthetase, class Ia; (InterPro:IPR002301) -0.754411037228712 -7.6594757889554 4.11172177466502e-05 0.00368109352688872 9.33974967619657 17.3167548922895 -0.754411037228712 0.104751081528131 AT5G52070_at 5.63392136787249 6.054822635934 6.17059831126305 6.19027707006564 6.2645248131824 5.49688112957832 4.70940059235541 4.43188990507154 4.57168520394027 4.52674391995473 3.31765321008676 3.84777974691375 3.90922009369898 3.95516683529046 2.95511875197980 3.82000948743178 4.07605704990088 3.66456337448669 4.85105145184625 0.255863080613789 0.250848843010778 0.260764123753111 0.243618304467471 0.250332310862324 0.253449938941051 0.259113384931797 0.243165801991983 0.244662082568769 0.243165801991983 0.245448346549184 0.245964104240119 0.247874410470857 0.251474673624785 0.249325838368379 0.243165801991983 0.243165801991983 0.243216886906576 0.243165801991983 5 5|0 +|/ 21181008 21181908 21181334.222 21178537 21182251 + gene protein_coding_gene TRUE TRUE AT5G52070.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42670.1); similar to Os05g0140600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054599.1); contains InterPro domain Agenet; (InterPro:IPR008395) -0.979618851783879 -7.65483342709446 4.13065049589574e-05 0.00368109352688872 9.3363259295617 9.79055094181738 -0.979618851783879 0.158968784456165 AT5G16000_at 4.47363368674509 5.21546852889058 3.31816329402257 3.46638264365815 4.65557786642224 4.31525016315201 5.3334407553119 5.44451194901234 5.72344569326117 5.63619958734004 7.98495708393498 7.97217749010448 7.00017540516404 7.25285639546573 7.62357072175886 6.50747815714753 4.97854728239568 6.72670863605296 5.7591334871477 0.311593332903491 0.312852233713733 0.330272578544865 0.320791773959013 0.311919297437172 0.325182062892404 0.310212734607712 0.310212734607712 0.31794154531392 0.310212734607712 0.314425957216388 0.315367700252634 0.310212734607712 0.31831856607709 0.319745392712221 0.310212734607712 0.330314132042897 0.312355178315547 0.310212734607712 5 5 + 5226431 5226981 5226672.636 5224146 5227291 + gene protein_coding_gene TRUE TRUE AT5G16000.1 NIK1 (NSP-INTERACTING KINASE 1); kinase similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G30520.1); similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96908.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.91716619788323 -7.65042257099603 4.14872425958694e-05 0.00368109352688872 9.33307039947893 10.8838378537782 -0.91716619788323 0.144834209633418 AT5G22860_at 6.47688334249583 6.44833659789638 8.3979451784383 7.65011290040087 5.61522176820525 5.12569957054091 7.10365591289465 6.63386925270504 5.02058298297573 5.3812900998674 4.32961911986182 5.66089215406721 5.96613749203788 5.19860226737041 5.14437386862137 5.09060440142701 6.38434192675478 4.85543741996475 5.79295719401984 0.221399270760454 0.235235102962552 0.229302876838115 0.230588165606009 0.224724974048272 0.219222096968159 0.226487699657258 0.217653531013317 0.222315774074142 0.218554670125824 0.228293810657125 0.216195976484484 0.216195976484484 0.225875042018248 0.223879541972055 0.219805438282636 0.223178789239741 0.220663760850585 0.219957511642247 5 5 - 7639914 7641487 7641081.727 7639321 7642987 - gene protein_coding_gene TRUE TRUE AT5G22860.1|AT5G22860.2 serine carboxypeptidase S28 family protein similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT5G65760.1); similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT2G24280.1); similar to hypothetical protein LOC780095 [Xenopus tropicalis] (GB:NP_001072639.1); similar to Os01g0767100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044360.1); similar to Os06g0647400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058206.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S28; (InterPro:IPR008758) -1.05004832883354 -7.64884571401411 4.15520665934815e-05 0.00368109352688872 9.33190596922476 12.0449794855559 -1.05004832883354 0.174810868699942 AT5G23070_at 5.03449246696197 5.30460422133967 5.303480629321 5.63675725542712 6.189144053201 6.45370723588478 6.2157653137391 6.33752878419021 5.26552060918581 5.05909185468672 5.362479987931 5.94549910896319 5.45478283615318 5.38545156039879 6.0180183494395 5.74926338166442 5.23787553664137 5.66430859568863 5.21957439760081 0.188909236756847 0.197559205350516 0.203771304397004 0.185091996071368 0.193163697787396 0.195732054668073 0.190450458550907 0.192979650572913 0.192514737087719 0.196936785074407 0.187760837680213 0.191186698041081 0.195296463425843 0.190278338841660 0.191361320488688 0.189325648634037 0.199880721081034 0.187240559527889 0.185091996071368 5 5 + 7742265 7742733 7742518.455 7741906 7742981 + gene protein_coding_gene TRUE TRUE AT5G23070.1 thymidine kinase, putative similar to thymidine kinase, putative [Arabidopsis thaliana] (TAIR:AT3G07800.1); similar to TK1-like deoxyribonucleoside kinase [Lycopersicon esculentum] (GB:AAQ08180.1); contains InterPro domain Thymidine kinase; (InterPro:IPR001267) -0.69656227807109 -7.62875717904616 4.23877390872929e-05 0.00369695589534075 9.31704407178207 11.2012377650587 -0.69656227807109 0.0897307522288343 AT5G09870_at 8.52564622684372 8.7539573139508 8.41257645060652 8.77527069133482 9.05660841513975 8.56904978783815 10.2664174176122 10.278811487237 9.89046265232202 10.2918536781776 11.0019527015966 10.9541943028569 10.6720477416588 10.7110006080571 10.6609346111744 10.5428907310061 9.86420885201492 10.7486218282401 10.0146175594591 0.102418509277905 0.0990242265583015 0.112800483782738 0.103995060678566 0.101685374455195 0.111601255083357 0.0990152244820153 0.098921028112239 0.104489545929023 0.098921028112239 0.0997215839391766 0.0991623590684173 0.098921028112239 0.104549524404953 0.0998276041362243 0.098921028112239 0.098921028112239 0.101106374472797 0.0997074875876045 5 5 + 3077418 3077951 3077719.636 3073357 3078263 + gene protein_coding_gene TRUE TRUE AT5G09870.1 CESA5 (CELLULASE SYNTHASE 5); transferase, transferring glycosyl groups Cellulose Synthase Identical to Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC 2.4.1.12) (AtCesA-5) (CESA5) [Arabidopsis Thaliana] (GB:Q8L778;GB:Q9FIB9); similar to CESA2 (CELLULASE SYNTHASE 2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G39350.1); similar to CESA6 (CELLULASE SYNTHASE 6), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G64740.1); similar to CESA9 (CELLULASE SYNTHASE 9), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G21770.1); similar to cellulose synthase [Populus tremula x Populus tremuloides] (GB:AAT09898.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25581.1); similar to 52O08_12 [Brassica rapa subsp. pekinensis] (GB:AAZ67558.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Cellulose synthase; (InterPro:IPR005150); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.780471235700352 -7.62674176742322 4.24725958872461e-05 0.00369695589534075 9.3155502098185 19.4348552498513 -0.780471235700352 0.112357676951699 AT5G19090_at 4.41329454897314 4.43780567211719 3.76731952047542 3.7813996051493 3.79937840323853 4.08500509467719 4.01382049116742 3.88740350561719 4.86464155111942 4.85203555817059 5.82216849168955 6.62393228377196 5.65246646213201 5.91505015819264 6.46288805860891 6.10193290593254 4.87770058481106 5.22388931999969 5.03721902827177 0.266562567554916 0.265107088604608 0.274328099368333 0.27455248571836 0.265143366467209 0.274390515470235 0.267710448894904 0.270089205243327 0.264441517144289 0.265342248431907 0.265812481793674 0.27521057006581 0.266683259476083 0.269911275172172 0.283741077869649 0.269361246706707 0.263892394323755 0.264572542011785 0.268539150925375 5 5 + 6389277 6389704 6389496.545 6387491 6390026 + gene protein_coding_gene TRUE TRUE AT5G19090.1|AT5G19090.2 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G06130.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71268.1); similar to heavy metal-associated domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96467.2); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121)|similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G06130.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71268.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.588157134264294 -7.62300325372822 4.26304981008679e-05 0.00369695589534075 9.31277778742266 9.3996628113417 -0.588157134264294 0.0542748936731287 AT5G13460_at 4.30442903910613 4.58323331967724 2.65085745639024 2.54186745356452 3.9747059658866 3.71924348384007 4.8535636109575 4.50606077631579 4.57118771451744 5.51110374061628 7.9575540535241 8.27943023055534 6.7388438269917 7.4619012397389 8.12824120442724 6.89214688194752 5.62109723963392 7.13451989529265 6.25211165530075 0.266294067470642 0.264303055223547 0.273343870759432 0.278923318595381 0.263231095878788 0.262403571275545 0.263630431534174 0.272459391496412 0.290413944133083 0.261634342568994 0.264331463274648 0.261634342568994 0.261727677880412 0.264559835833926 0.267967340644862 0.261634342568994 0.277154570756028 0.269457147793084 0.264490120991039 5 5 + 4317738 4318209 4317986.364 4315762 4318363 + gene protein_coding_gene TRUE TRUE AT5G13460.1 IQD11 (IQ-domain 11); calmodulin binding similar to IQD12 (IQ-domain 12), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G03960.1); similar to Os03g0355700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050136.1); similar to IQ calmodulin-binding re (GB:ABE78306.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.697719870634674 -7.59837681595024 4.36869383803151e-05 0.00374121422325853 9.29447084199959 10.2525040673800 -0.697719870634674 0.0908545138973114 AT5G39740_at 9.94809773096376 9.8787629230423 9.8884940180914 10.0156054049467 9.9238432224146 9.8482551501981 10.1646541121506 10.1313910758757 9.39343934971348 9.15615181471308 9.57105752675928 10.0529665614077 9.5222338183201 9.49158903125243 10.3265215000003 9.35966851723196 9.51435530948194 9.42296841096595 9.117215942406 0.0797010353844937 0.0752364350453261 0.078600963841022 0.0797279444981193 0.077360153101884 0.0765633340621652 0.0796707542630757 0.0755299486879427 0.0806037131347014 0.0753016893624765 0.078426802014811 0.0767954216186949 0.0769190615104505 0.0788390439771198 0.0779702870724295 0.0754913526000537 0.0777605649815724 0.0783177553274852 0.0820424386029556 5 5|0 +|/ 15921515 15922050 15921780 15920524 15922690 + gene protein_coding_gene TRUE TRUE AT5G39740.1 60S ribosomal protein L5 (RPL5B) Identical to 60S ribosomal protein L5-2 (RPL5B) [Arabidopsis Thaliana] (GB:P49227;GB:Q41921); similar to ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G25520.1); similar to 60S ribosomal protein L5 (GB:Q6UNT2); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484); contains InterPro domain Eukaryotic ribosomal protein L5; (InterPro:IPR005485) -0.532629696116528 -7.55822827696849 4.54716334057705e-05 0.0038459752917451 9.2644591314515 19.4148575147295 -0.532629696116528 0.028845988978033 AT5G19290_at 8.85860333119812 9.0082032319526 8.68221124181424 8.6063696930529 9.47210927192613 9.57180690821144 9.67807554495778 9.82626324423895 9.66931595136228 9.66162437621478 10.6455272735144 10.8608007191674 10.4053102816676 10.2834549615571 10.2953966613338 10.3142611847177 9.46634025234678 10.3436953800659 9.9875032858572 0.141646014577607 0.131722020336747 0.13940432545376 0.150362428332041 0.129287039982976 0.152001642133714 0.130085155060509 0.133424932374785 0.145779335666410 0.133307478375603 0.133463326852363 0.130420343477335 0.132206782415653 0.133161534035295 0.134959994833819 0.129729010654169 0.150575132552015 0.133850380076530 0.133013906817719 5 5 + 6494556 6495027 6494754.818 6494057 6495286 + gene protein_coding_gene TRUE TRUE AT5G19290.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT5G14980.1); similar to Os01g0317800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042883.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB46702.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.555127550187059 -7.54248749628616 4.61931363454436e-05 0.00389098747093102 9.25263626201345 19.2627867469729 -0.555127550187059 0.0424006118156486 AT5G35790_at 9.98484764579955 9.95421929774493 10.0222003366946 9.9699609744954 10.5684809340488 10.2349796573748 10.7315189723285 10.4830501057418 10.8889831333371 11.0497036171315 11.2913081098024 11.1756630750285 10.7135291016868 11.0398808899451 11.2969950409476 10.9776693274855 10.8338437444639 11.0538863274219 11.0693430432303 0.0719840073680545 0.0697501931930242 0.0703599892091558 0.0703073515804694 0.0688583507325178 0.072793067523779 0.069878041380033 0.0697193719724061 0.0754831153751865 0.0718858312201664 0.0692262639907137 0.0684698841820229 0.0727442110549247 0.0728995866665369 0.0739902392466735 0.0682605813497679 0.0722291661000387 0.0681996313401465 0.068920523385397 5 5 - 13974147 13974736 13974419.182 13973920 13976975 - gene protein_coding_gene TRUE TRUE AT5G35790.1 G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1); glucose-6-phosphate 1-dehydrogenase Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root. Identical to Glucose-6-phosphate 1-dehydrogenase 1, chloroplast precursor (EC 1.1.1.49) (G6PD1) (G6PDH1) (APG1) [Arabidopsis Thaliana] (GB:Q43727;GB:O65577;GB:Q9FFM5); similar to G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G13110.1); similar to G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G24280.1); similar to Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (G6PD) (GB:Q43839); similar to glucose-6-phosphate dehydrogenase [Nicotiana tabacum] (GB:CAA04994.1); similar to Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (G6PD) (GB:O24357); contains InterPro domain Glucose-6-phosphate dehydrogenase; (InterPro:IPR001282) -0.632498408393781 -7.53434092909074 4.65714910407603e-05 0.00390684576733191 9.24650487559548 21.2689190155272 -0.632498408393781 0.0727296944662276 AT5G08570_at 10.1928398700289 10.2255588789685 10.3570732899855 10.3078883575576 10.4309295129091 10.1525913884498 10.9015470000722 10.9871937103859 9.83042744804473 10.2528896742121 10.3741257791148 10.6382882629109 10.5237700095261 10.4414153314609 10.5042650501539 10.5240352844843 10.4088411043130 10.3563220609752 10.1459967325522 0.0852826658075545 0.0834894626811349 0.0851141993003591 0.0822065494057945 0.083316364220493 0.0876870219563851 0.0861709893676192 0.088848102046364 0.0890792696583462 0.0895324711607759 0.0886591384531265 0.0829137594504831 0.0854269830801547 0.0856011029095097 0.084410048826183 0.083345397854083 0.0920665050240142 0.08554013524728 0.0856220978529793 5 5 + 2779818 2780213 2780026.818 2778001 2780442 + gene protein_coding_gene TRUE TRUE AT5G08570.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26390.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G56350.1); similar to pyruvate kinase [Glycine max] (GB:AAM94349.1); similar to pyruvate kinase [Glycine max] (GB:AAM94348.1); similar to Pyruvate kinase, cytosolic isozyme (PK) (GB:Q42806); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -0.568761580342105 -7.46034624395821 5.01687003143102e-05 0.00417453498840269 9.19042078751544 20.7183631570299 -0.568761580342105 0.0514229135567843 AT5G12980_at 5.15984527821817 5.1757790847423 5.7049895851323 5.40059275870977 4.66551363042446 5.26914617132192 4.99704168533363 5.43500443090478 4.48491219139842 4.49011425391301 4.41025160772311 4.75853601850589 4.35730563637211 4.53534945492297 4.84237825402374 3.90270671141043 4.49597758190558 4.57336263251457 4.43356928211615 0.208644278992509 0.204892931997293 0.205317582639806 0.213752356059837 0.207856130941432 0.205807620371753 0.205970174509583 0.207490978152179 0.213523313392946 0.209889626925238 0.213714073105564 0.207535259836088 0.208406066966655 0.204892931997293 0.208560089180044 0.206424405012822 0.207660143319188 0.208435579768042 0.210291596554829 5 0|5 /|- 4105584 4106725 4105962.5 4105386 4108187 - gene protein_coding_gene TRUE TRUE AT5G12980.1 rcd1-like cell differentiation protein, putative similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT3G20800.1); similar to Os04g0613400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053854.1); similar to PREDICTED: similar to rcd1 (required for cell differentiation) homolog 1 [Apis mellifera] (GB:XP_623701.1); similar to Os03g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051477.1); contains InterPro domain Cell differentiation proteins, Rcd1-like; (InterPro:IPR007216) -0.86474539151106 -7.40040648009304 5.3307363721609e-05 0.00435091537045342 9.1444660179339 9.70299677625583 -0.86474539151106 0.139423960367660 AT5G50420_at 5.84267762961198 5.89456503484947 5.021651397844 5.51093634092426 6.48099835372682 6.50574443471415 6.43155409596609 7.02779672033275 6.29826922955974 6.54919496927867 7.79998204747701 7.62051893620262 7.29347407050658 7.07290580410656 8.11680794006114 6.66791437197748 6.80299786735285 7.62874762479273 6.79439688197832 0.190194855050585 0.189074143906742 0.211537232363412 0.191787454756590 0.193566336148276 0.186607014065256 0.194386994500332 0.192745750932428 0.193906408423311 0.186631735616689 0.186757907346326 0.193393332207706 0.190618347479455 0.195378920246085 0.194599973607519 0.191421881904522 0.208221306206085 0.187092063195293 0.189946712517708 5 5 - 20547715 20548663 20548162.364 20547433 20550082 - gene protein_coding_gene TRUE TRUE AT5G50420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53770.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17270.1); similar to hypothetical protein MtrDRAFT_AC135796g16v1 [Medicago truncatula] (GB:ABE82081.1); contains domain FAMILY NOT NAMED (PTHR13398) -0.841828807605153 -7.39967693427017 5.3346873063441e-05 0.00435091537045342 9.14390377873552 13.0508433058705 -0.841828807605153 0.133847428307762 AT5G07770_at 5.92697849439649 5.79106804338356 6.02709559749368 5.91225900424873 5.42949941417736 5.65005905570717 3.56887036225342 3.68297772062873 4.66960575702816 4.35585095651113 4.14375418368363 4.62295437562581 3.94999518519581 4.06046487391224 4.00838196424708 3.87941124900061 4.91815524651111 4.46017732269174 4.75642184967697 0.284688252763253 0.280507460048157 0.291394921214541 0.287622518851248 0.292285763060059 0.280839915892291 0.279435544082223 0.283754161052655 0.279435544082223 0.279435544082223 0.282106892764587 0.279435544082223 0.283318325844305 0.279435544082223 0.282955609112396 0.279710404868830 0.280546212009154 0.283752583154362 0.286473976732443 5 5 + 2478604 2478990 2478811.5 2474643 2479338 + gene protein_coding_gene TRUE TRUE AT5G07770.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to formin homology 2 domain-containing protein / FH2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07780.1); similar to putative diaphanous homologue [Oryza sativa (japonica cultivar-group)] (GB:BAC55695.1); similar to Os07g0596300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060171.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.567161687324102 -7.39476009592864 5.3613991935548e-05 0.00435541790290214 9.14011268648032 9.67328662212644 -0.567161687324102 0.0528670352877007 AT5G08430_at 7.35106756315317 7.36050179293616 7.6726083253579 7.64789609518556 8.16637646685416 7.84666803304816 7.82862157908787 7.74583884992796 7.30998569539995 7.89641338306857 8.07921136580089 8.47669627332875 8.27384850284876 8.31115006191676 7.7315739852985 8.5009532517466 8.39825809569193 8.3001201716912 8.1867674041516 0.185911827703211 0.18757873012346 0.194950467473592 0.192998209814422 0.183389544782136 0.190438525425555 0.181943653293588 0.185803758252780 0.240981577118245 0.185802827601063 0.186456024167119 0.181098891753174 0.181851234044023 0.191087939293132 0.20675638450614 0.183278585251098 0.195517353852255 0.189167495973243 0.186565350512884 5 5|0 +|/ 2718932 2720069 2719574.8 2716701 2720213 + gene protein_coding_gene TRUE TRUE AT5G08430.1 SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein Identical to Protein At5g08430 [Arabidopsis Thaliana] (GB:Q9FT92); similar to zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G63700.1); similar to CPRF interacting protein [Petroselinum crispum] (GB:CAC00636.1); similar to Os01g0884500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045018.1); contains InterPro domain Plus-3; (InterPro:IPR004343); contains InterPro domain GYF; (InterPro:IPR003169); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.57527961037059 -7.35820181912991 5.5646900861676e-05 0.00450276699466421 9.11182441485882 15.7307966504008 -0.57527961037059 0.0573347003965912 AT5G08340_at 4.2602317135773 4.66063626798091 4.70802814068194 4.60854107462882 5.08110796071841 4.86403345745827 4.74953226898549 4.86418911302116 4.71002027968987 4.39081156979549 4.65425866899218 4.7108580253002 4.95471441868816 4.6777868559186 4.56459635069011 5.27320868574331 4.38200626784723 5.0890209541479 4.41290985216966 0.189248338777693 0.190577239967108 0.190806234499363 0.200452906621076 0.190679719439359 0.198507519332759 0.192970971337397 0.194266460867178 0.190778974784557 0.190161625862103 0.190083962781567 0.18638601186239 0.189241555770725 0.184672809857769 0.192695316079287 0.190461271641908 0.192449881561626 0.196313369826292 0.194280196597580 5 5 + 2684931 2685875 2685318.455 2683833 2685998 + gene protein_coding_gene TRUE TRUE AT5G08340.1|AT5G08340.2 riboflavin biosynthesis protein-related similar to riboflavin biosynthesis protein-related [Arabidopsis thaliana] (TAIR:AT5G23330.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72379.1); similar to Os03g0801700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051594.1); similar to riboflavin biosynthesis protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99395.1); contains InterPro domain Riboflavin kinase / FAD synthetase; (InterPro:IPR002606) -0.646596042509353 -7.32098917161174 5.78036834444402e-05 0.00458893252062277 9.08284742137184 9.37098092244869 -0.646596042509353 0.0830822834559209 AT5G60670_at 8.69806550922202 9.02243490914709 8.9042765742342 8.76966536547477 8.4623657367161 8.67836733325836 8.94737817151633 8.95792502848036 8.36537882427582 8.73551787675118 9.27992238443514 9.76558098457483 8.87755037551267 8.73128941587346 10.0477359799840 8.77953011871537 8.91456753959786 8.91906351894109 8.67327297116817 0.136674402107790 0.134436662921778 0.134571310077620 0.138063748413078 0.137872510994435 0.143527201807223 0.134838500484517 0.132433517614176 0.152757747927133 0.141739444332323 0.136660224257604 0.136652978957720 0.143485299307818 0.138041928883221 0.149141625522633 0.136927280628096 0.142883808015252 0.150009624651543 0.140388707467510 5 5 - 24398296 24398768 24398526.727 24398136 24398819 - gene protein_coding_gene TRUE TRUE AT5G60670.1 60S ribosomal protein L12 (RPL12C) Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsicum annuum] (GB:AAR83868.1); similar to Os02g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047832.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) -0.610562871489741 -7.32057600504084 5.78281404520436e-05 0.00458893252062277 9.08252465688312 17.6829572937242 -0.610562871489741 0.0713740062479804 AT5G09510_at 8.31360493011181 8.7714474727574 8.7256474731889 8.879233421801 8.78214543437674 8.82909016415102 9.01255699676007 8.99436798318734 8.18178091883276 8.24076573164344 8.75515884483489 8.69265255294845 8.34794581276156 8.33567185475831 9.10901693857483 8.31605426608422 8.09865227338607 8.2463815726252 8.01662499447924 0.136707692132234 0.136707692132234 0.141164882111809 0.137168472310561 0.140544725715078 0.136707692132234 0.142207008698869 0.149011741771582 0.156868175161856 0.142902274798529 0.146732334251088 0.138125143765912 0.138766854960961 0.144032876972272 0.14332521111599 0.145293044569298 0.145683851568746 0.149628236803308 0.138853391841959 5 5|0 -|/ 2955744 2956413 2956096.111 2955114 2956674 - gene protein_coding_gene TRUE TRUE AT5G09510.1|AT5G09510.2 40S ribosomal protein S15 (RPS15D) Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G04270.1); similar to Os03g0798600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051572.1); similar to ribosomal S15 protein [Retama raetam] (GB:AAL32040.1); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222); contains InterPro domain Ribosomal protein S15, eukaryotic and archaeal form; (InterPro:IPR005713)|Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G04270.1); similar to ribosomal S15 protein [Retama raetam] (GB:AAL32040.1); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222); contains InterPro domain Ribosomal protein S15, eukaryotic and archaeal form; (InterPro:IPR005713) -0.648562169353993 -7.30891112993486 5.8523352809466e-05 0.00461145851266634 9.07340266508019 17.1055528909494 -0.648562169353993 0.084023891092791 AT5G44670_at 3.15534947707502 4.39406977479939 3.53006033353132 4.07711101876783 3.32760146981609 3.64021513102328 5.61707587277238 6.08705614282113 4.11270779634635 4.9832281672075 5.11147008413751 6.0285101417065 5.46714343751054 5.5387310635391 5.01738749689001 5.42476274949913 4.24930807232492 4.88927269051279 5.92353585024458 0.264603535673214 0.240704665274413 0.264052536170418 0.247092997882409 0.240217923223538 0.245263952566362 0.245133612677130 0.242047355788522 0.24903177471153 0.241900717864601 0.245423156001774 0.240217923223538 0.244784732395313 0.256481305850697 0.244391783056445 0.244137481040548 0.263873988216849 0.243185459678969 0.246059751547487 5 5 - 18036445 18037395 18036780.091 18036132 18038612 - gene protein_coding_gene TRUE TRUE AT5G44670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20170.1); similar to Os06g0328800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057533.1); similar to Os02g0712500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047907.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72474.1); contains InterPro domain Protein of unknown function DUF23; (InterPro:IPR008166) -1.35684361297974 -7.28661321978682 5.98780174094757e-05 0.00467933213528157 9.0559148185882 9.33972431338307 -1.35684361297974 0.253883706623005 AT5G17790_at 4.03295693903503 4.28051079214623 4.61955046604836 4.59941336809839 4.53092053600881 4.69840338922885 5.41449125804302 5.25699516112817 4.11891879383351 4.92960646307997 5.18375118268189 5.82308734634084 5.10663318065281 5.28239543257407 5.88946987340743 5.59206016466044 5.49740979261816 5.45217049316576 4.95593030928993 0.211893357449436 0.211776391999118 0.213932443657124 0.214076345572652 0.222111764120633 0.209763092935893 0.212554342632289 0.21826210950716 0.214744922900637 0.210123440067465 0.211368693078085 0.208984033860651 0.216929963979993 0.214031152825336 0.210598334260587 0.22027075711367 0.213809140134220 0.207238790574670 0.214991326887613 5 5 - 5869822 5870377 5870096.545 5869712 5872720 - gene protein_coding_gene TRUE TRUE AT5G17790.1 VAR3 (VARIEGATED 3); binding Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. Identical to Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3 protein) (VAR3) [Arabidopsis Thaliana] (GB:Q8S9K3;GB:Q64M74;GB:Q9FN73); similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G55040.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE90693.1); similar to Os01g0815700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044614.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -0.571989004892708 -7.27645427902582 6.05066131698017e-05 0.00471054466131113 9.04792518610256 9.75241725804901 -0.571989004892708 0.0585692099734982 AT5G51460_at 3.18316613181827 3.42952861344154 4.11543664591320 3.91493282289676 4.99103343989437 4.09047974630448 7.19199763260361 7.00601312914867 5.90813687952986 7.050429658438 8.91510145683148 8.45822103416277 8.2952619050038 8.56310493632945 7.57174252939178 7.90661033562963 6.58434116021001 7.1996909820179 7.67401409474922 0.212621079979637 0.205856946300356 0.214884731366181 0.216487374475132 0.212352951997544 0.237059992145944 0.210839233641251 0.204516339759272 0.223693679986759 0.210330217349067 0.208250988566263 0.204955223932464 0.204516339759272 0.214637262919933 0.214969592577654 0.205014872251998 0.220647034361773 0.231835784468841 0.204851574175409 5 5|0 +|/ 20920345 20921342 20920784.125 20918203 20921765 + gene protein_coding_gene TRUE TRUE AT5G51460.1|AT5G51460.2|AT5G51460.3 ATTPPA (Arabidopsis thaliana trehalose-6-phosphate phosphatase); trehalose-phosphatase homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G12430.1); similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G22590.1); similar to trehalose-phosphate phosphatase [Nicotiana tabacum] (GB:AAU03490.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) -0.967289225879476 -7.24755017571271 6.23351535674117e-05 0.00481727711956536 9.02511702854918 12.1474666052623 -0.967289225879476 0.168360349744162 AT5G52060_at 8.42197315259728 8.43438308971775 8.76922648886764 8.66930422083994 8.9779902706002 8.98166091827533 9.89762905871163 10.0234487319307 9.87367583131253 9.91825466143644 10.8634748552357 10.8715213235239 10.5968190904466 10.7114233958299 10.5076294937991 10.6647235526441 10.1698548002729 10.5563974767006 9.85696485065621 0.096388782022062 0.0966571880182682 0.09796097020827 0.097951217018071 0.0932903457873877 0.0968478603505424 0.0959498131099856 0.095539930489168 0.0934858282256277 0.0901916337277947 0.093784826360716 0.0951619315354224 0.0942945645420906 0.0970548070459802 0.0934703800436268 0.0935821255573531 0.0978698366369092 0.0911364701788105 0.0912456079171777 5 5|0 -|/ 21169701 21170388 21169943.8 21169440 21171470 - gene protein_coding_gene TRUE TRUE AT5G52060.1 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1); protein binding A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. similar to ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G07220.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71291.1); contains InterPro domain Apoptosis regulator Bcl-2 protein, BAG; (InterPro:IPR003103); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.506843865806575 -7.21063493119131 6.47594626743587e-05 0.00491140959365684 8.9958227297722 19.2722997979551 -0.506843865806575 0.0278948497673338 AT5G20070_at 7.90017938727163 8.06710271408493 8.67036841786006 8.78533905249265 8.78632305673097 8.45197839889227 9.36068718703118 9.37566226412242 8.97028951361753 9.37711752668055 9.60213869099934 9.7063778929378 9.5482586758358 9.6256679834751 9.50535630034348 9.59193964959013 9.47004430951768 9.54417279681855 9.27362127247661 0.129315805613427 0.129266001105704 0.119546688611618 0.132810428588710 0.115355824242722 0.119788952322575 0.113174192072040 0.125445175011246 0.123859136279015 0.119705505000800 0.115206286447034 0.113763760271131 0.117184629355843 0.122033761748373 0.118903851101009 0.113174192072040 0.122027971095688 0.120668255733624 0.120034208363647 5 0|5 /|+ 6781016 6782275 6781901.4 6779856 6782484 + gene protein_coding_gene TRUE TRUE AT5G20070.1 ATNUDT19 (Arabidopsis thaliana Nudix hydrolase homolog 19); hydrolase Identical to Probable NADH pyrophosphatase NUDT19, chloroplast precursor (EC 3.6.1.22) (Nudix hydrolase 19) (AtNUDT19) (NUDT19) [Arabidopsis Thaliana] (GB:Q94A82); similar to Isopentenyl-diphosphate delta-isomerase, type 1 [Medicago truncatula] (GB:ABE86498.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.587702925316995 -7.17015281346776 6.75378851111827e-05 0.00508668632232386 8.96348442479366 18.0653320473264 -0.587702925316995 0.0677111058550216 AT5G58420_at 8.7185761410886 8.87927116857149 8.75762401743382 8.7414374088565 8.92177231722328 8.89217269471947 8.8455919206512 8.85132284815182 8.33414497082835 8.52643199955643 8.90837681644003 9.49684527007615 8.77307190868227 8.73931570160594 9.35422781733855 8.84466438142106 8.70815040918278 8.85498959368883 8.2051328372378 0.127394442051980 0.128784854560875 0.131571630378973 0.131779907718388 0.128429473313722 0.129177539366028 0.132313009723825 0.127876193234587 0.150189214459481 0.134925922326519 0.12724809914408 0.12724809914408 0.130036871561551 0.131049033055957 0.134429924296386 0.12724809914408 0.134638759152471 0.128989035647133 0.132972968721021 5 5 + 23637459 23638094 23637861 23636732 23638320 + gene protein_coding_gene TRUE TRUE AT5G58420.1 40S ribosomal protein S4 (RPS4D) Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribosomal protein S4-2 (RPS4B) [Arabidopsis Thaliana] (GB:P49204;GB:Q42346;GB:Q9FL39;GB:Q9LYQ6); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4E; (InterPro:IPR000876); contains InterPro domain KOW; (InterPro:IPR005824) -0.50464886012431 -7.16915473709135 6.76080222475198e-05 0.00508668632232386 8.96268429860642 17.4835669845097 -0.50464886012431 0.0284325596615057 AT5G55180_at 4.14335813193314 3.91489934975846 3.19928924207215 3.41290854977292 3.40419445383044 3.96737894755574 6.3960839469424 6.82332207352913 3.84642822017082 4.835220413639 5.71095020141517 6.50464725168272 5.60097775531413 6.16807245514502 6.07811450687379 7.98729184219885 5.9386893062642 5.46403116034941 3.89551871905682 0.252261848157815 0.251032229957177 0.253584094820695 0.255621805535972 0.252990757846133 0.256125776450506 0.257635120824244 0.252311088078401 0.267125955160303 0.251266758281731 0.255976888881225 0.260046038878552 0.256115531053008 0.264615234648224 0.253924164042334 0.263085032564056 0.263148456016096 0.250237605546097 0.253494849663723 5 5|0 +|/ 22406932 22407454 22407240.6 22406008 22407938 + gene protein_coding_gene TRUE TRUE AT5G55180.1 glycosyl hydrolase family 17 protein similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G26830.1); similar to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] (GB:BAB17320.1); similar to beta-1,3-glucanase 2 [Ziziphus jujuba] (GB:AAZ40342.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.81497527139095 -7.16624356201784 6.78130552380377e-05 0.00508668632232386 8.9603497210195 9.5946723006881 -0.81497527139095 0.133772017924936 AT5G20950_at 10.2547321964976 10.2535923296431 9.90583296467569 9.9664075186019 10.2952256663892 10.4030898005571 9.18419042812525 9.08273044372578 9.58379001437156 8.9849509788595 8.85941470388596 9.61774081783288 9.1795249948314 8.92561616627071 9.51115511524693 8.90304486326813 9.25842045363794 9.29110681908766 9.11397688642649 0.0932011811450337 0.0942911916709479 0.0941549505436384 0.0946504969066212 0.0946170865517067 0.0958729769507186 0.0920911086710416 0.0953516601619466 0.113246581905832 0.0937018507979184 0.103964487482099 0.0912502538306005 0.0955901990714702 0.102591973957500 0.0934166309259453 0.0905275592056003 0.09527337653755 0.0937425433727825 0.0929160751148822 5 5 - 7107654 7108321 7107980.273 7107378 7111351 - gene protein_coding_gene TRUE TRUE AT5G20950.1|AT5G20950.2 glycosyl hydrolase family 3 protein similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G62710.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G04885.1); similar to beta-D-glucan exohydrolase [Nicotiana tabacum] (GB:BAA33065.1); similar to beta-D-glucosidase [Tropaeolum majus] (GB:CAA07070.1); similar to beta-D-glucosidase [Gossypium hirsutum] (GB:AAQ17461.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.502072314356778 -7.14662821544206 6.92125133962414e-05 0.00517120861926593 8.94458910154905 19.1286379776821 -0.502072314356778 0.0276884086180135 AT5G13100_at 6.47244073706855 6.8903432099612 6.96592430099528 7.07323620631113 6.860681693139 7.18587800011346 7.427537330944 7.5991198382837 7.58193012533074 7.44121772410975 9.00197185098367 9.03042394552725 8.64934527616095 8.37704505124872 8.63335161049992 8.2500709685228 7.9417371530219 7.19520674314301 8.13635045723072 0.189344510865967 0.193169476657479 0.188668551760734 0.189844263291234 0.187930734232848 0.194838287776185 0.186160257220741 0.192592029203861 0.195956781781747 0.188172763668656 0.188166789011940 0.186145806496470 0.191871549204437 0.201275316995881 0.186945238009913 0.187598261418525 0.210306634107505 0.199402828396590 0.192181287015950 5 5 + 4157271 4158212 4157860.091 4156663 4158556 + gene protein_coding_gene TRUE TRUE AT5G13100.1 similar to Os01g0102500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041749.1); contains domain no description (G3D.3.40.109.10); contains domain NADH oxidase/flavin reductase (SSF55469) -0.680359715176586 -7.14343847846144 6.9443073195789e-05 0.00517120861926593 8.94202119383666 15.1117585864915 -0.680359715176586 0.0981010114364188 AT5G39210_at 8.90736236351795 9.12682206693456 8.60150110976923 8.63599036888315 9.5926771210794 8.89466377780454 9.07181142985004 9.04533094425573 7.99841453348525 8.98293888862942 8.43753864199774 8.9285061194562 8.79594550231657 8.8912150691866 8.88744241920918 9.01025062452172 8.56900189017021 7.83231498559189 8.58315288019213 0.170194255617301 0.170736145307695 0.172301185007587 0.171264578658841 0.170656640937935 0.192029635763912 0.174281143086412 0.177555749985693 0.207990293208588 0.168617602832633 0.175084249060315 0.171865626202565 0.166954623843383 0.168672998808190 0.171723846037687 0.173372373944646 0.196139769336035 0.196683759732430 0.176460874896034 5 0|5 /|+ 15720646 15721189 15720949.111 15720349 15721332 + gene protein_coding_gene TRUE TRUE AT5G39210.1 CRR7 (CHLORORESPIRATORY REDUCTION 7) Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex. similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87136.1) -0.782267253528192 -7.11430068244069 7.15887390494444e-05 0.0052926372056731 8.91849872485526 17.5797844014244 -0.782267253528192 0.126847523811986 AT5G55740_at 5.80572579315554 5.88087198771939 5.74870052639833 5.82546885187168 7.08899029623664 6.66220780919968 7.01782583039267 7.15939075931906 5.5548198610739 6.57142507793488 7.25522785922491 7.84423588219252 7.45282851744673 7.2016093146141 7.71026121288249 7.6023012556675 6.63884090143247 6.11870090848455 6.52888512640268 0.207590779065850 0.207595528665142 0.210976377367962 0.206749711723519 0.206151205762553 0.213863600504914 0.204719114655773 0.203615610424426 0.207581386735737 0.207682518814017 0.207438616670675 0.205452846287259 0.207700026537857 0.208427488143970 0.206215894191210 0.206245930356488 0.211380398606846 0.213869617417851 0.207190517600154 5 5 - 22579250 22579742 22579509.727 22579167 22581659 - gene protein_coding_gene TRUE TRUE AT5G55740.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21300.1); similar to OSJNBa0016O02.23 [Oryza sativa (japonica cultivar-group)] (GB:CAE06013.3); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83958.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.608495103646243 -6.99551704626455 8.11218487006741e-05 0.00578918675749126 8.82138399656087 13.1218364417684 -0.608495103646243 0.080003724474062 AT5G03140_at 6.51956755796985 6.99705270991816 7.05336551080335 7.32154380483033 7.36518591870631 7.27345984773852 7.8268055813514 8.22512129214445 7.76680942245119 8.1288317086069 9.06261149849505 9.09257381098857 8.85591009851515 8.81519063670425 8.55069942743373 8.74147025049927 7.71844724914681 8.18483135513977 8.34205189433984 0.194993543489492 0.183144523377235 0.188498541627983 0.178237868138041 0.177347823451675 0.187706891649605 0.175951294305128 0.173491602202113 0.176333150180418 0.174423660500376 0.173491602202113 0.173491602202113 0.177232967859998 0.176115585711601 0.173491602202113 0.176713777682210 0.179276272774228 0.181227830222304 0.180956539107736 5 5 - 737794 738312 738042 737589 740015 - gene protein_coding_gene TRUE TRUE AT5G03140.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53380.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE83261.1); similar to Os05g0125200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054518.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.735684239327807 -6.98042638843145 8.24297216225753e-05 0.00585849249995028 8.8089043780407 15.6762366775984 -0.735684239327807 0.118258616787642 AT5G35620_at 7.55140603722877 7.27939588750836 7.73717598096892 7.91082058812003 7.8839217315445 7.76642002348373 7.49136930127233 7.62032152845779 7.73828869080188 7.27390053471879 8.08510304314944 8.11136859811573 7.76703058479388 7.852228545978 8.1985612864654 7.74177953056545 7.47122185694887 7.92556607357136 7.27688029901828 0.125154917866867 0.125553207334529 0.137796255120922 0.125679969372071 0.128967244176404 0.134035764735929 0.128155380722410 0.128511056451206 0.128580405888991 0.12657909696634 0.125439866629364 0.125099776145048 0.126087871719557 0.12432315713994 0.122558597199104 0.125533832466780 0.145813716140747 0.127921851146139 0.137374878148855 5 5|0 -|/ 13842178 13843532 13843103.1 13841935 13843621 - gene protein_coding_gene TRUE TRUE AT5G35620.1|AT5G35620.2 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUSES); RNA binding / translation initiation factor Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection. Identical to Eukaryotic translation initiation factor 4E-2 (eIF4E-2) (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso protein) (eIF(iso)4E) (EIF4E2) [Arabidopsis Thaliana] (GB:O04663;GB:Q9SAN8); similar to EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT4G18040.1); similar to eukaryotic initiation factor 4E [Capsicum annuum] (GB:AAY62607.1); contains InterPro domain Eukaryotic translation initiation factor 4E (eIF-4E); (InterPro:IPR001040)|Identical to Eukaryotic translation initiation factor 4E-2 (eIF4E-2) (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso protein) (eIF(iso)4E) (EIF4E2) [Arabidopsis Thaliana] (GB:O04663;GB:Q9SAN8); similar to EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT4G18040.1); similar to eukaryotic initiation factor iso4E [Nicotiana tabacum] (GB:AAU06579.1); contains InterPro domain Eukaryotic translation initiation factor 4E (eIF-4E); (InterPro:IPR001040) -0.56045258114672 -6.97337803846356 8.30485102970986e-05 0.00585849249995028 8.8030645172406 15.3170025255538 -0.56045258114672 0.0634847205929153 AT5G44530_at 8.04510198651788 7.78986715866141 7.31788460720525 6.93806752898045 8.76037296342557 7.83083549460182 9.70271843859922 9.27113336553296 9.52191794715956 9.85567403325562 10.5620003631691 10.7237636642938 10.0795037174689 10.3446314092037 10.2443119366367 9.82116024269084 9.13526334926703 9.93621296006931 9.58781917002636 0.152947258150885 0.147093747199835 0.162121070671699 0.166223602248356 0.140222631216226 0.158231176179786 0.139585934074246 0.135547995373864 0.145969110279844 0.135547995373864 0.136351243132573 0.137244128059887 0.141045967250283 0.138045506086959 0.135547995373864 0.135839930135396 0.145340618764709 0.138951312803235 0.135547995373864 5 5 + 17957798 17958290 17957981.636 17954916 17958519 + gene protein_coding_gene TRUE TRUE AT5G44530.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G30600.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G19170.1); similar to Os06g0700000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058476.1); similar to Os01g0769200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044371.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -1.03852877543849 -6.97128565018068 8.32331864597522e-05 0.00585849249995028 8.80132952852117 18.0874941956891 -1.03852877543849 0.194231131324876 AT5G14740_at 12.7024328083467 12.9237843121041 12.4986439446909 12.6630231861068 12.9220906255153 12.9356027875384 13.3853249224414 13.6856683408526 13.7746854685953 13.8584166745047 13.9445669638413 14.0963765958495 13.8692213794547 13.8171368196360 13.9127661005472 13.9451639273146 13.5818192411194 13.9657544976451 13.8193175909144 0.069425037695484 0.0699642000960051 0.0732489538003556 0.0705484330630523 0.0676706448443495 0.0690941364660021 0.0693553467080369 0.0722427710969463 0.0792902411165016 0.0676706448443495 0.0711010380254978 0.0676706448443495 0.0695306785149886 0.0711669926738825 0.0729497026030986 0.0695054274267839 0.0750424258210739 0.0676706448443495 0.0695748490116977 5 0|5 /|+ 4761012 4762317 4761405.222 4757975 4762618 + gene protein_coding_gene TRUE TRUE AT5G14740.1|AT5G14740.2|AT5G14740.3|AT5G14740.4|AT5G14740.5 CA2 (BETA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding|CA2 (BETA CARBONIC ANHYDRASE 2) Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. Identical to Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) (CA2) [Arabidopsis Thaliana] (GB:P42737;GB:Q42116;GB:Q9FDZ0;GB:Q9LER2); similar to CA1 (CARBONIC ANHYDRASE 1), carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G01500.4); similar to carbonic anhydrase (GB:AAA50156.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.578836699300755 -6.96612274018825 8.36908031556831e-05 0.00587059774972128 8.7970458359312 26.8191083336232 -0.578836699300755 0.0705939526777039 AT5G61660_at 10.9758148617202 11.0780992066281 10.4949645729835 10.5124833441407 10.5781122580082 10.3379951671167 10.7877968969462 11.0318797117767 10.7407775866349 10.4788035609300 11.2609905147236 11.3434155902315 11.1110327363399 11.3418344691163 11.4971910449811 10.8437463480641 10.7201120089702 11.1210315674316 10.5175025396887 0.0800805717960068 0.0799221254692617 0.0859414306283042 0.0831031329985724 0.081788375615019 0.0815764870961794 0.079550589247509 0.0808820724431103 0.0847995830939159 0.0843979158116496 0.079550589247509 0.079550589247509 0.079550589247509 0.0800067474097455 0.079898715513607 0.079550589247509 0.0868130127826048 0.0829235708058764 0.0801074996139032 5 5 - 24796702 24797062 24796885.636 24796441 24797156 - gene protein_coding_gene TRUE TRUE AT5G61660.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G46730.1); similar to hypothetical protein MtrDRAFT_AC152818g3v1 [Medicago truncatula] (GB:ABE77867.1) -0.55256550202999 -6.92470805006312 8.7463254531132e-05 0.00605960167088953 8.7625467130846 21.5916168427818 -0.55256550202999 0.0619143135309477 AT5G67150_at 6.47122914672316 6.8427854036513 6.40304563380201 6.40780424719973 6.79209918392234 6.24125210799698 7.23879092606806 7.13078557525778 5.26021001575294 6.81956645522865 7.09155358963049 7.25789541160706 7.18430851754998 7.28503324303578 6.99416316484822 7.4446827621132 7.24685783373852 6.98476032439631 6.17167026474432 0.199952250920496 0.199794019118442 0.185506427602184 0.20630723221517 0.191078687454202 0.206011545313332 0.182528986256649 0.194592853334755 0.194711916631152 0.191226490532383 0.186108493507601 0.186560719444315 0.188961988703713 0.187304699872012 0.182528986256649 0.188241000635509 0.192411640564531 0.183976836997449 0.193312949643568 5 5 - 26813207 26813664 26813456.182 26812997 26814538 - gene protein_coding_gene TRUE TRUE AT5G67150.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50280.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.723328322261195 -6.92362322800244 8.75645494743569e-05 0.00605960167088953 8.7616397519759 13.3259602452978 -0.723328322261195 0.116497329449178 AT5G14610_at 4.04752955265108 4.30870400298814 4.02232417577223 4.1020498616896 4.55451439399857 4.13195152335342 4.61444105802619 4.36795368690665 4.76356537251904 4.78015282580002 4.81331550462635 5.91717510285173 5.12539430874053 5.36492658778581 6.49798824847842 4.92782654587433 5.12276959728896 5.39854999158354 4.89751179895463 0.229523718977962 0.229423480233891 0.219139944477553 0.219139944477553 0.219957668239292 0.227373416693105 0.226380200859465 0.225120252894637 0.227350057736442 0.228845890535791 0.222006562386386 0.227769175856721 0.222436685050039 0.228187532902524 0.222424232258355 0.223086995523894 0.22462372050004 0.219139944477553 0.222899694194188 5 5 + 4713969 4714618 4714316.3 4710566 4715072 + gene protein_coding_gene TRUE TRUE AT5G14610.1 ATP binding / ATP-dependent helicase similar to DRH1 (DEAD box RNA helicase 1) [Arabidopsis thaliana] (TAIR:AT3G01540.1); similar to P72 DEAD box protein [Pisum sativum] (GB:AAF04377.1); similar to WW/Rsp5/WWP; Helicase, C-terminal [Medicago truncatula] (GB:ABE92110.1); similar to Probable DEAD-box ATP-dependent RNA helicase 46 (GB:Q9LYJ9); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.654415586249111 -6.91093240545873 8.87591727305494e-05 0.00610118601221694 8.75101714196373 9.37355181608737 -0.654415586249111 0.0969544344511528 AT5G13000_at 8.30752348058993 8.28611093041325 8.69972235543347 8.67946815819346 9.17306406333294 8.93371384903578 9.086327895293 9.20891479603747 9.31954048059484 9.48526288732271 9.93014603886248 10.0083073258945 9.48540018984674 9.8128481056623 9.70395100293245 9.87900578581206 9.38966111742915 9.75281016417953 9.47873549244354 0.102457533436079 0.101990822489668 0.0992735117230006 0.101816262965969 0.0972017945473814 0.107861719269883 0.0962246787613008 0.099545362650818 0.114447863016812 0.095785745868556 0.100772590572463 0.100373702052583 0.096382502420048 0.0972655436570107 0.106816586457419 0.10024861002503 0.116317602579823 0.102305360338016 0.0965846186487474 5 5 - 4110464 4111306 4110678.3 4110298 4121430 - gene protein_coding_gene TRUE TRUE AT5G13000.1 ATGSL12 (GLUCAN SYNTHASE-LIKE 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a gene similar to callose synthase similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93351.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains InterPro domain Hpt; (InterPro:IPR008207); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.516894521083357 -6.90673729360919 8.9157998993621e-05 0.00610658770067337 8.74750063441561 18.3834119425984 -0.516894521083357 0.0468159415731206 AT5G02270_at 5.71241316956775 5.87372846303847 6.55178062551773 6.64109734756702 6.03249014400437 6.35487173897829 6.78606999983833 7.09641329263216 6.51598798600744 6.40788393168074 6.89773285932754 7.2166853422523 7.34872870716422 7.55698777235235 6.82448222619547 7.28940098057148 6.8745229649907 6.9035321973453 5.87904713126757 0.209745104320648 0.208177586659423 0.219621882561942 0.212502288337591 0.200273832944175 0.212550700357386 0.202321422706820 0.208209816445280 0.225920680250944 0.207370823381326 0.214660274196047 0.207168492109541 0.206564673933597 0.220300427223943 0.217468816719388 0.202565940511353 0.208957521232699 0.198528906200735 0.2009573167522 5 5|0 -|/ 467310 468422 467765.4 467106 469078 - gene protein_coding_gene TRUE TRUE AT5G02270.1 ATNAP9 (Non-intrinsic ABC protein 9) member of NAP subfamily Identical to Non-intrinsic ABC protein 9 (GCN-related protein 3) (NAP9) [Arabidopsis Thaliana] (GB:Q9LZ98); similar to POP1 [Arabidopsis thaliana] (TAIR:AT5G44110.1); similar to Lipid exporter ABCA1 and related proteins, ABC superfamily (ISS) [Ostreococcus tauri] (GB:CAL50045.1); similar to Os03g0316900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049940.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.60904448142606 -6.87273111666455 9.24645632666243e-05 0.00622682874931968 8.71890209713095 13.0719325047731 -0.60904448142606 0.0837561247513237 AT5G54170_at 8.81492356480897 8.82820451122037 9.2250703210083 9.32422353695477 9.64733320586076 9.44974717838586 8.8222403867105 8.85391945447534 8.91667192263962 8.66614079861207 8.72042855060186 8.50843765010375 8.57999916603683 8.83066405322899 8.35213164000226 9.19868908417353 9.20398173929896 8.62982566503382 8.72116236571058 0.122405313557533 0.120755582850088 0.129190925024321 0.120755582850088 0.124447291693502 0.126798337336652 0.121671746407174 0.124174649357729 0.134942168917659 0.125817324764113 0.123302723204453 0.127636699234729 0.124076753503862 0.123970358205147 0.130812919023920 0.120755582850088 0.121958047776497 0.123801388839548 0.122527362482169 5 5 - 22002282 22002918 22002601.909 22002104 22004431 - gene protein_coding_gene TRUE TRUE AT5G54170.1 similar to CP5 [Arabidopsis thaliana] (TAIR:AT1G64720.1); similar to putative nodule membrane protein [Medicago sativa] (GB:AAL57201.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.498876564868034 -6.86724272541648 9.30107376980656e-05 0.00622682874931968 8.71427087437833 17.8812134645352 -0.498876564868034 0.0387161401668023 AT5G64670_at 5.94874752047182 6.31262790968152 6.54417006301277 6.47595329830917 6.36195621247188 6.21493656347164 6.52636454965753 6.75832213853113 5.51296267947576 5.92163167419571 6.53280692893095 7.15093236374659 6.53593975666892 6.08501696856848 7.169678294111 6.65413464410863 6.35493637723675 6.41793285774092 5.74738083015403 0.168961815066833 0.168961815066833 0.171296347671960 0.172179451368097 0.175887682874312 0.175457422476868 0.174646119199583 0.171654458905034 0.191731397866861 0.168961815066833 0.183263275714450 0.172068725398784 0.174269348540545 0.178436674584054 0.171743036245815 0.168961815066833 0.183733683084376 0.170210480979965 0.177183149454614 5 5|0 -|/ 25869768 25870752 25869998.333 25869493 25871215 - gene protein_coding_gene TRUE TRUE AT5G64670.1 ribosomal protein L15 family protein similar to RPL15 (ribosomal protein L15) [Arabidopsis thaliana] (TAIR:AT3G25920.1); similar to Os08g0310100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061512.1); similar to Mitochondrial/chloroplast ribosomal protein L15/L10 (ISS) [Ostreococcus tauri] (GB:CAL57979.1); contains InterPro domain Ribosomal protein L15, bacterial form; (InterPro:IPR005749); contains InterPro domain Ribosomal protein L15; (InterPro:IPR001196) -0.594968088738575 -6.84787301352231 9.49668095549292e-05 0.00633714055820155 8.69789155019048 12.5628834495330 -0.594968088738575 0.0797707979013443 AT5G59750_at 9.20807045598572 9.30726524201811 9.91501189024936 9.84550371831992 10.1594108738872 9.96516322661423 10.6776952922181 10.2231700232440 10.1870612877674 10.1452037641376 10.1146010343854 10.0898028101553 10.0129527765268 10.2111321171331 9.90803403972604 10.2985008294406 10.3238369944838 10.1110457469285 10.1544031274143 0.0750267421399169 0.0733849622110557 0.080375490064399 0.0737089074636124 0.0733568395532424 0.0786882068597273 0.0730376283440602 0.0778472080512476 0.0798932028548448 0.0751177788671153 0.0740759793598004 0.0730376283440602 0.0742315273563498 0.0756889463754791 0.0775512250579065 0.0736111118539959 0.0785280364409052 0.0739289986858759 0.0730376283440602 5 5|0 +|/ 24091831 24092523 24092201.5 24090515 24092768 + gene protein_coding_gene TRUE TRUE AT5G59750.1 riboflavin biosynthesis protein, putative similar to ATGCH (Arabidopsis thaliana GTP cyclohydrolase II), 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II [Arabidopsis thaliana] (TAIR:AT5G64300.1); similar to Os05g0460600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055757.1); similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72560.1); contains InterPro domain GTP cyclohydrolase II; (InterPro:IPR000926); contains InterPro domain 3,4-Dihydroxy-2-butanone 4-phosphate synthase; (InterPro:IPR000422) -0.618641846643198 -6.83208632709841 9.65944783209418e-05 0.00641383730627433 8.6845019512786 20.0606418503357 -0.618641846643198 0.0880704343732089 AT5G47550_at 7.79230811671783 7.93481868146444 7.46270641953803 7.75084132119376 7.98854622816185 8.19638297502775 8.11235613629638 8.38684408150577 6.90763860841918 7.22229151903077 8.29640939102484 8.90712811404674 7.96194914830395 7.96390008028503 8.76612485588407 7.18424143058565 7.82562191459615 8.6182115887191 7.77403688688799 0.160472693775830 0.158943516702993 0.156630662998182 0.159430707675120 0.156721272408861 0.159889417769025 0.154750916600579 0.154750916600579 0.182441866779516 0.166897258384530 0.155987529959951 0.157250935055970 0.165102997047846 0.169965196926806 0.162109031656393 0.174088213513885 0.158276081241537 0.160875252215079 0.163062575390723 5 5 - 19303822 19304164 19303974.545 19303676 19304221 - gene protein_coding_gene TRUE TRUE AT5G47550.1 cysteine protease inhibitor, putative / cystatin, putative similar to cysteine protease inhibitor family protein / cystatin family protein [Arabidopsis thaliana] (TAIR:AT4G16500.1); similar to cystatin domain containing protein [Brassica oleracea] (GB:ABD64972.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) -0.597942297230668 -6.82302527239501 9.75425294537584e-05 0.00644623053260073 8.6768004280312 15.6989858217599 -0.597942297230668 0.0815142078033281 AT5G59170_at 6.07241569940362 6.13760448346439 5.95571786366858 6.12741232063251 5.07111155470193 6.0085191312197 5.89562092458984 6.75666596490899 5.9546816430994 6.23895339825349 6.57386511314332 6.21547216731438 6.16466773448388 6.34252466432566 6.34205016471622 6.57129913447922 6.21656956659369 6.33871253280116 6.1249436564937 0.206910157953983 0.212811154376766 0.220024756654189 0.220424917201831 0.214809816310549 0.220645973992588 0.215501341430563 0.223306105889647 0.210080758732514 0.210865178128879 0.204002298593592 0.210036404020078 0.21332161353638 0.215132207520489 0.211538937394918 0.204294242462673 0.217841404448310 0.216798208979097 0.206424446955704 5 5 + 23899550 23900110 23899894.909 23899214 23900348 + gene protein_coding_gene TRUE TRUE AT5G59170.1 proline-rich family protein similar to ATEXT3 (EXTENSIN 3), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G21310.1); similar to cell wall protein (GB:AAA32741.1); contains InterPro domain Glutelin; (InterPro:IPR000480) -1.12975799275034 -6.78752390121416 0.000101356675939146 0.00665549298514924 8.64651067773273 12.2290525098309 -1.12975799275034 0.222552609861935 AT5G01920_at 7.98514406486264 8.29283280466347 8.16862972683929 8.07275551919346 8.97395140707409 8.55235152028295 8.46223016316509 8.66834837498998 9.82423390169106 9.81892481600147 10.0573970533358 9.98138881589883 9.74519553251076 10.0227123000380 9.8219084036317 10.1463883973031 9.7251751644814 10.0063115711069 9.77985839331284 0.147505242177658 0.143467920600386 0.151158469686403 0.144706933329339 0.135084482108439 0.145917256966373 0.136087631721114 0.142894113854032 0.135270533565878 0.132512045827234 0.134707413454700 0.135009774589951 0.135226183393900 0.13676318896486 0.133114378623535 0.136033086606214 0.136418209089499 0.133196928223376 0.134376859728415 5 5|0 +|/ 360197 360819 360551.8 359104 362901 + gene protein_coding_gene TRUE TRUE AT5G01920.1 STN8 (state transition 8); kinase Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2. similar to STN7 (STT7 HOMOLOG STN7), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G68830.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86991.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.646914247016968 -6.7779580704533 0.000102412193546003 0.00670338601012696 8.63831767528018 18.2700214601956 -0.646914247016968 0.0985189434237766 AT5G08620_at 5.91097068279943 5.66026942728308 5.41920143068095 5.67161199390626 6.10478956026745 5.16116220063655 5.19468754289655 5.53831824717539 4.51779830624981 5.09033425383554 4.79000291557685 5.3860095677078 5.00872826314304 4.37076829462571 5.51389149180519 5.33477332626449 5.26185173415845 4.83355305287109 5.62639975705624 0.235171171894050 0.230197142921309 0.236061210261940 0.239525001210095 0.235281636657345 0.233844129271944 0.235985209608713 0.228799104335213 0.243534546214157 0.228534467251005 0.232181747071793 0.227819913369841 0.230795568163262 0.227048966330298 0.228443118634696 0.229476659149955 0.236560856764640 0.233772074438682 0.237048235806868 5 5 + 2796697 2797525 2797191.091 2794458 2797661 + gene protein_coding_gene TRUE TRUE AT5G08620.1 DEAD box RNA helicase (RH25) Identical to DEAD-box ATP-dependent RNA helicase 25 (EC 3.6.1.-) (RH25) [Arabidopsis Thaliana] (GB:Q94C75;GB:Q9ZS00); similar to DEAD box RNA helicase (RH26) [Arabidopsis thaliana] (TAIR:AT5G08610.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G63630.1); similar to myc-regulated DEAD/H box 18 RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61516.1); similar to DEAD-box ATP-dependent RNA helicase 31 (GB:Q9FFQ1); similar to putative RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD46119.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.967487552426235 -6.76549403763158 0.000103805652902004 0.00675661600243338 8.6276223160206 10.6529387706138 -0.967487552426235 0.184372415004422 AT5G49100_at 6.63162057606307 6.8926325889983 6.65548343528746 6.52352522338214 8.15036828499547 8.06270982890004 7.82007740335263 7.43935801790234 7.87818901306246 8.07395492460978 9.05154509500101 9.09095750099982 8.72330879510483 8.65539159805364 9.1265324088836 8.97395967992767 8.28526489699099 8.48666594521628 8.9272925123292 0.199587808870323 0.178030794958996 0.190714437383161 0.192131106260239 0.174014638248121 0.171832826013952 0.175054663118141 0.168582772243907 0.18317331040834 0.172478069225021 0.171045717420459 0.177488445873202 0.172100701922711 0.175569095489356 0.173645245451367 0.169960973582895 0.1683793674973 0.175134385074411 0.173120668736428 5 5 - 19914932 19915419 19915114 19914596 19916340 - gene protein_coding_gene TRUE TRUE AT5G49100.1 similar to OJ000315_02.19 [Oryza sativa (japonica cultivar-group)] (GB:CAE05374.1); similar to Os02g0526700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047000.1); similar to OSJNBa0042I15.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04879.1) -0.601573769422125 -6.76480837028021 0.000103882911171339 0.00675661600243338 8.62703328599867 15.8181462815382 -0.601573769422125 0.0844555511120364 AT5G65890_at 6.6481627914277 6.53355504133759 7.20534827116337 6.87399608957879 7.20400380030641 7.13393932286058 7.4554082340594 7.5543253089356 6.83046186199707 7.03278064651632 8.10915144597189 8.54171248126083 8.13737722325873 7.89873774155944 8.2790782681462 8.37324811580148 7.94250102915548 7.20853668024783 7.73857946839464 0.222037512602139 0.219601836764852 0.217248470437864 0.217116197272220 0.203291064893128 0.214737383037756 0.203291064893128 0.208813719318104 0.212381352495266 0.21765065248047 0.204519566017702 0.209166223101375 0.212495523799017 0.211064752033333 0.209690457613503 0.209296212936683 0.207967623201271 0.207368217078946 0.207854243631655 5 5 + 26374391 26374917 26374639.273 26372079 26375092 + gene protein_coding_gene TRUE TRUE AT5G65890.1|AT5G65890.2 ACR1 (ACT DOMAIN REPEAT 1) Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques. similar to ACR3 (ACT Domain Repeat 3) [Arabidopsis thaliana] (TAIR:AT1G76990.4); similar to unknown [Populus trichocarpa] (GB:ABG37643.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912)|similar to ACT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G25320.1); similar to unknown [Populus trichocarpa] (GB:ABG37643.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.541789127896477 -6.71904658264741 0.000109184682936436 0.00701427057524755 8.58756496205111 14.7070424568643 -0.541789127896477 0.0641990408364517 AT5G24660_at 8.33095903852226 8.69917772069248 9.37684543761428 9.53886838000682 9.02921098895838 9.07355764704192 9.80641231454021 9.71018012615992 8.62501372287794 9.17977936730916 9.67754513679352 8.16766664476929 8.87947420487968 9.5953498924653 8.01989461017005 8.6252615775257 9.09912130998435 8.8746852848137 7.83856324523256 0.144228092120528 0.141479380870711 0.143514105107989 0.139331419425273 0.139654887082829 0.154978284429052 0.139476768188846 0.145169632138245 0.153896446982624 0.144086115676905 0.141734672126835 0.147034161816937 0.146506623068727 0.139331419425273 0.157149651589959 0.146032811401984 0.149603534048929 0.149011094697377 0.149796789164534 5 5 - 8443509 8443705 8443588.727 8443282 8443837 - gene protein_coding_gene TRUE TRUE AT5G24660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24655.1); similar to unknown protein [Brassica rapa subsp. pekinensis] (GB:AAQ92331.1) -0.562040527701897 -6.71883843660472 0.000109209466273867 0.00701427057524755 8.58738473691243 17.9032315955996 -0.562040527701897 0.0719923400354247 AT5G38140_at 6.72557926990866 6.07589366822711 6.1397969320862 5.98899223253005 7.30136131931862 6.22898620711605 7.78064378097302 6.85732633425208 7.98663492794463 8.1553948758835 8.15466704142048 8.00813295677145 7.72201507869927 8.1793950949931 7.78966649267569 8.60560129135386 7.74037865777541 7.9746051059662 8.5291620618077 0.205018049127812 0.194933672032797 0.225198439575108 0.211857383596334 0.193138757927373 0.210132764644547 0.198052427919112 0.198574230829466 0.197719173118218 0.190129065961951 0.190610690292379 0.191096493194027 0.190731266107025 0.202291760375487 0.188132789488223 0.190452815895677 0.193117520662169 0.198336741677891 0.191162889074378 5 5|0 -|/ 15238070 15239191 15238506.375 15237438 15239502 - gene protein_coding_gene TRUE TRUE AT5G38140.1 histone-like transcription factor (CBF/NF-Y) family protein Identical to Nuclear transcription factor Y subunit C-10 (AtNF-YC-10) (NFYC10) [Arabidopsis Thaliana] (GB:Q58CM8;GB:Q9FF42); similar to HAP5B (Heme activator protein (yeast) homolog 5B) [Arabidopsis thaliana] (TAIR:AT1G56170.2); similar to similar to Plasmodium falciparum. Hypothetical protein [Dictyostelium discoideum] (GB:AAL96724.2); similar to putative histone-like transcription factor [Dictyostelium discoideum AX4] (GB:XP_644597.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -1.32064040128249 -6.70453721351627 0.000110927147099493 0.00705842053591388 8.57498656238128 14.7600916364692 -1.32064040128249 0.270726139020568 AT5G63530_at 7.21046284064573 7.25437830415635 8.3349018802479 8.08196880670815 8.70763371982835 8.23568803029199 8.28020422304676 8.20844829841682 9.04321264337085 9.0520093379193 8.89707744983564 8.96015514255477 8.77207485199564 8.65902342996034 8.80548730996625 9.27496897413509 8.58529922147064 8.67614656157084 8.87256195739805 0.172568639088617 0.167628982226782 0.166838309099827 0.160249349439749 0.156255545820625 0.156254310235908 0.163518376694501 0.153633695579946 0.159358084592638 0.153260750104313 0.151226046900629 0.158778856286192 0.15649388272762 0.172241904243232 0.160822206882463 0.160128720498399 0.168231191453279 0.159117819817634 0.154876773098133 5 0|5 /|+ 25451990 25452804 25452500.3 25450380 25453060 + gene protein_coding_gene TRUE TRUE AT5G63530.1|AT5G63530.2 ATFP3 (Arabidopsis thaliana farnesylated protein 3); metal ion binding|ATFP3 (Arabidopsis thaliana farnesylated protein 3) Farnesylated protein that binds metals. similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT5G50740.1); similar to OSIGBa0096P03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66434.1); similar to PPAK motif; Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE84491.1); similar to Os04g0390100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052639.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.624321303592137 -6.69894175858898 0.000111607253285827 0.00707977764983402 8.57012745459481 16.9482309782089 -0.624321303592137 0.0937990368073148 AT5G42680_at 5.43780440281384 5.67362711911653 5.11844738180191 5.17297315840493 5.95785444304458 5.90108653994388 5.83307198190415 6.09184012712066 6.60675770736287 5.96223369818728 7.48971800578912 7.15281235035312 7.37538904575146 7.30709365078027 7.28559622546628 7.90636240845361 7.52270159275773 8.02656768936684 6.21998388688353 0.187779758636755 0.188402032698024 0.205512466087922 0.198118998806647 0.188434379874705 0.194648238441398 0.194276842841708 0.187779758636755 0.198576799512468 0.196262435845953 0.189143001842766 0.187779758636755 0.191370529481697 0.19306362448664 0.190943493860448 0.195420741506803 0.198477230695936 0.201067183575079 0.193575353276821 5 5 + 17132009 17132559 17132258.182 17131824 17132645 + gene protein_coding_gene TRUE TRUE AT5G42680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39610.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21990.1); similar to Os09g0463600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063406.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09202.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460) -0.531741123871538 -6.65813099354329 0.000116708274290889 0.00735794023226561 8.53454676301578 12.533974086886 -0.531741123871538 0.0620996145917307 AT5G67280_at 6.7565362877242 6.9714759281817 6.92576732468478 6.96068802335892 7.57838255853312 7.78713294166829 8.00664522456517 8.25301995834358 7.32166268087013 7.93569598159612 8.57337542084666 9.52029431487857 8.41570383522176 8.81300127535511 8.71476486123738 8.85166480858462 7.86608413758895 8.5181127137421 7.7228391744548 0.160294390866446 0.158924279451409 0.160406164947318 0.156308045665816 0.148483490962553 0.15654145211949 0.148483490962553 0.154682849196017 0.171673090635666 0.156747276274764 0.148483490962553 0.156380609706912 0.157519351387567 0.155844400707786 0.156990363767978 0.151202435966264 0.162607304426703 0.158521654803143 0.148483490962553 5 5 - 26859661 26860208 26859935.273 26859496 26862416 - gene protein_coding_gene TRUE TRUE AT5G67280.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G37250.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G23300.1); similar to Os06g0638500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058153.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os09g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062569.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.540121533594715 -6.59924354556979 0.000124525232623264 0.00777917734167934 8.48276801255325 15.5645515891686 -0.540121533594715 0.0674015672265124 AT5G20380_at 9.43788818483746 9.43635130585887 10.0861678590800 10.0970294938675 10.0888819419262 9.89129431010525 10.2742533118855 10.3246840284369 9.74915799869504 9.92175185707124 10.1210820726182 9.71727916061071 10.2532910890622 10.227358954451 9.67475659214967 10.1947185179122 10.3435909790811 9.9186224126865 9.82920498198707 0.0769634803213 0.0743491983810993 0.0742785022517007 0.0764598485213224 0.0737918208055583 0.0855576230312855 0.0742020968369565 0.0744648153296321 0.0872987581796487 0.0790895910515814 0.0761860246340161 0.0746221127224904 0.0778572862241433 0.0793649028695854 0.074327461962498 0.073912235839404 0.077284114782856 0.0776027435606952 0.0737918208055583 5 5|0 -|/ 6888008 6890578 6888784.143 6887727 6892434 - gene protein_coding_gene TRUE TRUE AT5G20380.1 transporter-related similar to ANTR2 (anion transporter 2), organic anion transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE87274.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.472826719732079 -6.58184889437899 0.000126942834453007 0.00790617566970687 8.46737359990155 19.8994233469527 -0.472826719732079 0.0353406548920729 AT5G50200_at 8.8335863333366 9.11286916438958 8.54426898702226 8.48481371304638 9.11092966876196 8.91832725777832 4.87905779650134 5.50891451896692 6.05469098313856 5.17421489751211 4.06955237396155 3.99600776516844 4.40630513926521 3.81966323234666 3.61515092340182 4.22179307728791 4.74073558587037 3.6484995121054 4.01608917236146 0.226616027622638 0.224271476154258 0.230140337811336 0.223192810913451 0.227104664492749 0.233808955306032 0.234174792211360 0.226498131906915 0.259518072176257 0.229608767831412 0.227092114916508 0.224757350673615 0.223192810913451 0.232011572767116 0.223192810913451 0.225368887934577 0.263214644340935 0.243557065691649 0.236115689226762 5 5 + 20453942 20454703 20454473.727 20453406 20454952 + gene protein_coding_gene TRUE TRUE AT5G50200.1|AT5G50200.2|AT5G50200.3 WR3 (WOUND-RESPONSIVE 3); nitrate transporter|WR3 (WOUND-RESPONSIVE 3) Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction. similar to ATNRT3.2 (NITRATE TRANSPORTER 3.2), nitrate transporter [Arabidopsis thaliana] (TAIR:AT4G24720.1); similar to unknown [Capsicum annuum] (GB:AAM12786.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957) -0.711082663425197 -6.55050884545625 0.000131429618314188 0.00813630783061569 8.43952213153023 12.4972851643987 -0.711082663425197 0.124232158365202 AT5G16290_at 7.37171195380097 7.20540144507995 7.11393259036141 7.05285745053458 7.815918972393 7.70612611215467 7.52152053261553 7.87993157820164 6.33218139202911 6.97077188602087 7.93735435977175 7.85071793156713 7.774160191848 7.65582389510721 7.9305609372024 7.60860463070359 7.35710904846827 7.52019580941208 6.85515810791039 0.193718420136722 0.187494339959542 0.193240802605001 0.200397570744836 0.191487084547507 0.202773889346387 0.190738092284200 0.195374878882494 0.221717139009446 0.191700495109762 0.193888326141037 0.187494339959542 0.192414985227795 0.201222606274914 0.190342322718176 0.187494339959542 0.206367643808186 0.192307485270874 0.194816637235431 5 5|0 +|/ 5336313 5337360 5336771.222 5333767 5337748 + gene protein_coding_gene TRUE TRUE AT5G16290.1|AT5G16290.2 acetolactate synthase small subunit, putative similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT2G31810.1); similar to acetolactate synthase, small subunit, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96859.1); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.546299272705525 -6.53825325654208 0.000133231244266781 0.00819845138026072 8.42859031386901 14.6702682356411 -0.546299272705525 0.0717503727377366 AT5G10920_at 5.29810048846275 5.75943416543796 5.86575494272867 6.31481329852132 5.15936582422377 5.75223186159066 6.79715121830314 7.05240216165507 5.26460888349827 5.52828006934163 6.00816514003475 6.95107119485885 6.04988841857765 5.98884553694532 6.69684953774179 6.1298605202989 6.51816277855743 5.52417038180586 5.3918976487697 0.225809452140236 0.228446638802110 0.213969519685476 0.222236736100881 0.219804624437257 0.240787632058931 0.223378223812230 0.216885041120457 0.231634343614053 0.228535876990527 0.221047104595259 0.216070800025939 0.217053482228192 0.215832638875144 0.225940420590869 0.213969519685476 0.224351626843198 0.225031814913916 0.226166932553723 5 5 + 3443214 3443867 3443531.818 3441753 3444143 + gene protein_coding_gene TRUE TRUE AT5G10920.1 argininosuccinate lyase, putative / arginosuccinase, putative similar to strongly similar to ar (GB:CAJ75323.1); similar to Os03g0305500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049883.1); contains InterPro domain Argininosuccinate lyase; (InterPro:IPR009049); contains InterPro domain Fumarate lyase; (InterPro:IPR000362); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Delta crystallin; (InterPro:IPR003031) -0.829614360191662 -6.5181456865446 0.000136246090534528 0.00833406686413332 8.41060521720714 11.8140595230183 -0.829614360191662 0.157767147227264 AT5G24870_at 5.6334755336549 5.75428958346192 7.9699303013636 7.79982614697259 7.84195895486023 7.29070603257514 7.0365621638369 6.99563929973642 6.00141282867031 6.67069487456337 5.12803837111814 4.26847030358046 6.30474249245201 5.86437618244094 4.25560261862652 6.77183837033746 7.56985777206847 6.06407300453040 6.29457026041642 0.190143010492548 0.187191202491776 0.196664303284472 0.186134457063788 0.189382037889983 0.189725270120931 0.188231405951924 0.183809079232166 0.187128539815893 0.182646843649872 0.195184313798214 0.197164768433048 0.183637764861741 0.182646843649872 0.197312444280081 0.185348298165888 0.182854956262940 0.18825023130623 0.190768488453303 5 5 - 8545023 8545901 8545315.636 8544788 8547792 - gene protein_coding_gene TRUE TRUE AT5G24870.1|AT5G24870.2 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G10650.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE80412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.632740407278097 -6.50584055361463 0.000138127916769599 0.0084241049630815 8.39956860681237 13.0905989406965 -0.632740407278097 0.102246741437962 AT5G19220_at 10.6116675545259 10.5574790080727 10.5431753495424 10.4352368138124 10.6911263723596 10.6127825179480 11.1662692959097 10.9883115455662 11.2954403796790 11.2794061628543 11.8165857602247 11.9983118971145 11.534629972994 11.7841681795614 11.6564282580708 11.9021282890552 11.3439117991255 11.8729527383012 11.2459486461710 0.0800499128515512 0.0775912813521114 0.080990100698802 0.0825306567041704 0.0802439912853595 0.0809354855435265 0.0778077300871355 0.0775912813521114 0.082188300838182 0.0795724421118523 0.0821438916718081 0.0787147097095626 0.0798235035865456 0.0806761963058374 0.0831606297156968 0.0790810423304538 0.0786698005428414 0.0805687921228192 0.078735854238396 5 5|0 -|/ 6464332 6465059 6464666.429 6463826 6466833 - gene protein_coding_gene TRUE TRUE AT5G19220.1 ADG2 (ADPG PYROPHOSPHORYLASE 2); glucose-1-phosphate adenylyltransferase Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Identical to Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (ADG2) [Arabidopsis Thaliana] (GB:P55229;GB:O04929;GB:Q9SXS1); similar to APL2 (large subunit of AGP 2) [Arabidopsis thaliana] (TAIR:AT1G27680.1); similar to glucose-1-phosphate adenylyltransferase, putative [Medicago truncatula] (GB:ABE77800.1); similar to ADP-glucose pyrophosphorylase [Cicer arietinum] (GB:AAK27718.1); similar to ADP-glucose pyrophosphorylase large subunit [Brassica rapa subsp. pekinensis] (GB:AAK27685.1); contains InterPro domain Glucose-1-phosphate adenylyltransferase; (InterPro:IPR011831); contains InterPro domain ADP-glucose pyrophosphorylase; (InterPro:IPR005836); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.469043735659409 -6.43663822633419 0.000149256178967362 0.00899601454051463 8.3370687678906 22.2068750612374 -0.469043735659409 0.0396116971188642 AT5G48230_at 7.33520128672385 7.25563969077476 7.37230591529311 7.3980955680879 7.92881164605378 7.80651893835573 7.68994226252367 7.85246405504971 7.38529475806968 7.14511187473012 8.62862841123625 8.6357827360737 8.15723414457271 8.22526034300003 8.48484816750705 7.84509730227899 7.7274538167562 8.41677553582138 7.59811089144473 0.136314961384591 0.130285749911189 0.140259248816348 0.136780199331111 0.135084411128224 0.139649637975460 0.132832679724414 0.128186539540202 0.139581263794918 0.139334377091989 0.134810645414542 0.136664446724096 0.128186539540202 0.130135231215466 0.129969432642306 0.131521352852237 0.135595979497028 0.139421989560408 0.132037621486560 5 0|5 /|- 19569797 19570448 19570142.714 19569368 19572755 - gene protein_coding_gene TRUE TRUE AT5G48230.1|AT5G48230.2 ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q8S4Y1;GB:Q93YW6;GB:Q9LUB1); similar to acetyl-CoA C-acetyltransferase [Arabidopsis thaliana] (TAIR:AT5G47720.5); similar to Acetoacetyl-coenzyme A thiolase [Raphanus sativus] (GB:CAA55006.1); similar to cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum] (GB:AAU95618.1); similar to acetoacetyl-CoA thiolase [Picrorhiza kurrooa] (GB:ABC74567.1); contains InterPro domain Thiolase; (InterPro:IPR002155)|Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q8S4Y1;GB:Q93YW6;GB:Q9LUB1); similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative [Arabidopsis thaliana] (TAIR:AT5G47720.1); similar to Acetoacetyl-coenzyme A thiolase [Raphanus sativus] (GB:CAA55006.1); similar to cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum] (GB:AAU95618.1); similar to acetoacetyl-CoA thiolase [Picrorhiza kurrooa] (GB:ABC74567.1); contains InterPro domain Thiolase; (InterPro:IPR002155) -0.466130886052414 -6.43087883124264 0.000150225702960501 0.00902797499025123 8.33183401919224 15.4005262029765 -0.466130886052414 0.0380578616887626 AT5G02830_at 7.63528446219818 7.88813203596483 8.49371810817025 8.42958687693612 8.41280163239219 8.16158445150293 8.83032398459446 8.70662435777 8.11006923396218 8.74204995980664 9.02627320714781 9.29044480974335 8.92655234593669 9.01073184467536 8.96518036400575 9.42383774458995 8.80673259586232 8.75322948684717 8.67231288580285 0.162522500283477 0.160830483907354 0.158615337900838 0.160491265274677 0.165375177724351 0.179497379751325 0.159349695108480 0.154322860476621 0.196614002063820 0.155913980051092 0.153557954482246 0.160788488379871 0.157552136719898 0.159959019052072 0.153276584168222 0.167083004525694 0.177711759801209 0.166812667125501 0.153276584168222 5 5 - 644470 645172 644787.111 644277 648451 - gene protein_coding_gene TRUE TRUE AT5G02830.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17004.1); similar to Os03g0284900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049766.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.522699729330613 -6.42159594642158 0.000151802921544449 0.00904155356671087 8.32338597638507 17.0865154018786 -0.522699729330613 0.0662273619015014 AT5G37770_at 5.84659981026357 6.42387615609852 6.2225415076112 6.78018577386657 6.72785107393736 6.90366622062145 7.8392580681106 7.87780034273378 7.9245076493163 7.0828223975244 9.15022153014789 8.76561107821168 8.07178382498561 8.93161633531167 8.25341335164836 7.79966215054835 6.8509909877112 8.25138157859563 7.30603561888862 0.21690056064661 0.200816891577497 0.196831381611756 0.208195659533537 0.194002270066969 0.190705207310251 0.200804302659911 0.188530881822752 0.200884868018836 0.199318766072849 0.193760737648516 0.197899681258073 0.194492542569161 0.200324653615154 0.193451860654284 0.188530881822752 0.204951970052985 0.189221291355161 0.190008828926694 5 5 - 15016401 15016752 15016596.364 15016084 15016849 - gene protein_coding_gene TRUE TRUE AT5G37770.1 TCH2 (TOUCH 2); calcium ion binding Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Identical to Calmodulin-related protein 2, touch-induced (TCH2) [Arabidopsis Thaliana] (GB:P25070;GB:O22592); similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G66400.1); similar to Os05g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054953.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59327.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) -0.76058700410767 -6.41920950044012 0.000152211319202366 0.00904155356671087 8.32121200137922 14.6762841990995 -0.76058700410767 0.142348541299478 AT5G59870_at 8.61693561276986 8.97676470453815 9.5082322312578 9.5646621539065 8.31968711188388 8.16436614167344 9.26833286667276 9.35082911409725 9.27650094609639 9.60891225794186 10.015572166842 10.5362149365132 9.55697159939356 9.9402947330745 10.6701787549705 9.93146117118227 9.34886457154842 9.48064879183453 9.19660795307295 0.119913381518979 0.113446437804951 0.114486364092914 0.112574377803699 0.127358639651271 0.128067668636814 0.115911487837624 0.113374277711495 0.120169071730838 0.110433658362213 0.115493032821123 0.112007996229449 0.112662709891712 0.118851285133406 0.118958755359307 0.111887981708339 0.125438567329588 0.115759043041854 0.110658780387347 5 5|0 -|/ 24132846 24133238 24132985.1 24132607 24133446 - gene protein_coding_gene TRUE TRUE AT5G59870.1 histone H2A, putative Identical to Probable histone H2A.7 (HTA6) [Arabidopsis Thaliana] (GB:Q9FJE8); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G02560.1); similar to HTA6-sGFP [Gateway adapted binary vector pCGTAG] (GB:ABD16410.1); similar to HTA6-EYFP [Gateway adapted binary vector pFYTAG] (GB:ABD16408.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.531624618988346 -6.41625103253053 0.000152719280479683 0.00904558383217728 8.31851571101704 18.6190760219534 -0.531624618988346 0.0699944711341554 AT5G64420_at 5.38541177290976 5.19246684794472 5.28379739566416 5.42112630804871 5.29283654977969 5.46466934577829 5.14300267522107 5.53953880431123 4.52262821335226 4.70424444186524 5.32139089931783 5.74247553045944 5.45093188641975 4.79200920314152 5.17232088425333 5.4448386666018 5.43198711887138 4.66174293579653 4.44568830850674 0.172944043031448 0.169556700283238 0.178529195150600 0.171711787275010 0.172929381011909 0.17718001683781 0.17021721549963 0.176658889237913 0.182546486845930 0.178746347689752 0.169556700283238 0.173342773116005 0.17032713692771 0.169556700283238 0.176563402255041 0.176821332613518 0.175967027273391 0.178594449497502 0.175210249782776 5 5 + 25777749 25778300 25778040.182 25773558 25778567 + gene protein_coding_gene TRUE TRUE AT5G64420.1 DNA polymerase V family similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to Os02g0135700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045819.1); similar to hypothetical protein CC1G_03896 [Coprinopsis cinerea okayama7#130] (GB:EAU88224.1); contains InterPro domain DNA polymerase V; (InterPro:IPR007015) -0.570562476542828 -6.38967981770802 0.000157365660330250 0.00926737527832029 8.29423849409028 10.2452224433818 -0.570562476542828 0.085281785306757 AT5G49820_at 7.3708326045743 7.38516396384915 7.11522819757796 7.40254631070474 7.8506123928862 7.86196572203969 7.64644437445285 7.48570971186293 7.07699606660242 7.00449949224777 8.38814087964807 8.57740569775425 7.86603381156826 8.03859417666425 8.27058506607204 7.91713013028375 7.51561684991069 8.09620890435165 7.58635470176932 0.173053802521811 0.170616421204330 0.176835771338758 0.178019563257601 0.165904794044903 0.173277313600954 0.174162983440521 0.173166912924723 0.183953734373628 0.164481650242935 0.175528685860781 0.174158606607873 0.170803197546593 0.180729481186466 0.17261274114657 0.171996010370418 0.181112572488095 0.166401403705699 0.164481650242935 5 5|0 -|/ 20263999 20265103 20264366 20263726 20266771 - gene protein_coding_gene TRUE TRUE AT5G49820.1 EMB1879 (EMBRYO DEFECTIVE 1879) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31190.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE91893.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) -0.498043274984381 -6.37792365663519 0.000159470638381070 0.0093301054487236 8.28346234631499 15.1679785062792 -0.498043274984381 0.0570612468383494 AT5G55570_at 3.52404206009063 4.19554248656868 4.42895791405265 4.71389050896975 3.88858277707831 4.32394527174268 7.0059241284194 6.5718711386022 4.21910106508393 5.08372834792213 5.42908274016451 5.5761434261137 5.93948781488334 6.52078157623494 4.83545249351413 6.98477784962927 6.01393591157117 5.35960708972704 4.67267477914922 0.283229525278519 0.283750399215953 0.283229525278519 0.284114573903741 0.283229525278519 0.295640126655818 0.284294540342861 0.288938214112635 0.306691003355320 0.292059129349202 0.291794218017189 0.288146693808856 0.283229525278519 0.290692317055867 0.292180974389036 0.298905923907901 0.299750318041719 0.309516693642886 0.292141214224190 5 5 - 22531944 22532455 22532251.375 22531701 22532684 - gene protein_coding_gene TRUE TRUE AT5G55570.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57316.1); similar to Os01g0762300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044326.1); contains domain no description (G3D.3.20.70.20); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938) -0.83839646671927 -6.37363232999988 0.000160246683157967 0.0093301054487236 8.27952340035624 10.0770495407480 -0.83839646671927 0.165087428861607 AT5G13090_at 6.97654310078252 7.09203529668089 7.6403418028177 7.79432039397267 8.42248088941325 8.2786396453797 8.26010733075053 8.45604664033246 8.00495718920793 8.02169060758333 8.42767971367888 8.76625833721383 8.73254495560366 8.60002223381601 8.55528650917738 8.74169037676385 8.3581879049488 8.23694461288811 8.16166307048344 0.147751220279646 0.14628894563997 0.146940421687944 0.137242513348533 0.143770238528624 0.134517404698291 0.138230735140555 0.141407513931851 0.141559963677922 0.140823875660930 0.133915111962331 0.138568881803589 0.135783781932888 0.149124166052183 0.136011216814736 0.135586664826825 0.146631905676477 0.135802594209052 0.130664723460433 5 5 - 4153762 4154266 4154046.909 4153588 4154675 - gene protein_coding_gene TRUE TRUE AT5G13090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24270.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23186.1) -0.489603847727603 -6.36237588278774 0.000162302031934557 0.00941441616593773 8.26917765386455 16.1726129473177 -0.489603847727603 0.0536554221028804 AT5G59150_at 6.6933311515122 6.83728733129548 7.33854496824204 7.5210774552429 7.59312370274056 7.41401430152316 7.08360386108605 7.3750716348794 7.67840700526498 7.10135524324035 8.06456638696501 7.77958716721655 7.8565722670847 7.92039243022445 8.03493036477234 7.77463303184975 7.49983892291461 7.9521508061367 7.4464304169903 0.138797057693569 0.132353286124134 0.133509717211708 0.130368744460285 0.128020693100564 0.132800525804478 0.133607871137075 0.129935630914747 0.146794209613834 0.131166238170216 0.128020693100564 0.128020693100564 0.128020693100564 0.139970539306014 0.137316061405718 0.132289364340131 0.134434861763515 0.131581526582562 0.132809279503067 5 5 + 23895032 23895444 23895264.7 23893820 23895655 + gene protein_coding_gene TRUE TRUE AT5G59150.1 AtRABA2d (Arabidopsis Rab GTPase homolog A2d); GTP binding similar to AtRABA2c/AtRab11A (Arabidopsis Rab GTPase homolog A2c), GTP binding [Arabidopsis thaliana] (TAIR:AT3G46830.1); similar to Ras-related protein Rab11C (GB:Q40193); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.530037585310069 -6.34889080516012 0.000164802417642087 0.0095144960238191 8.25675758595604 14.8665392061372 -0.530037585310069 0.0715775368052265 AT5G52920_at 8.61504878460308 8.8248256403589 8.17410332756358 8.27030755865816 9.406236266346 9.10419682050517 9.59481653245485 9.30929307493417 8.22380007787682 8.71196296246152 9.86250607820695 9.98719458023072 9.15804931400798 9.42599273304994 9.8035365019735 8.94058765194974 8.93562392169678 8.78708987326803 8.76015604426163 0.165173200682437 0.160993390938197 0.170025552702135 0.165774955349034 0.165029842722874 0.167287398333657 0.165047202114025 0.163077565922359 0.192423517656226 0.161535816557123 0.173032124221633 0.163441182740393 0.164297706068379 0.171415503042575 0.163498922989393 0.163825343423336 0.170072186846035 0.177303615086415 0.164870954430614 5 5|0 +|/ 21482952 21483808 21483461.1 21480764 21484106 + gene protein_coding_gene TRUE TRUE AT5G52920.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G32440.1); similar to Pyruvate kinase isozyme G, chloroplast precursor (GB:Q40546); similar to Pyruvate kinase [Medicago truncatula] (GB:ABE87102.1); similar to Os10g0571200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065454.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -0.557615261762014 -6.33899977248076 0.000166663219537771 0.00959497305445521 8.24762966982943 17.8762929723436 -0.557615261762014 0.082271624115567 AT5G62140_at 6.61642691814499 6.329688242247 7.80080059337453 7.8905273917583 8.07080470612259 7.37041015038156 9.46437024729157 9.45189532716229 8.43843130114909 8.72654347943173 9.1172937804341 8.99021912055176 9.28747901980104 9.3641652669753 8.57383745867369 9.3976693739222 8.86130431025066 8.99688705638606 8.62195784144533 0.204476952823586 0.193557315232956 0.196978611288448 0.196747694426522 0.185688486109330 0.198100806207994 0.184265999645831 0.182256307829753 0.196784859042897 0.184538426449278 0.179640380405320 0.178991290877857 0.181023047468383 0.193128274723310 0.187611680845053 0.185523747354199 0.188630291241294 0.192588101954999 0.184273071095050 5 5 - 24971814 24972431 24972156.182 24971732 24972611 - gene protein_coding_gene TRUE TRUE AT5G62140.1 similar to Os02g0677600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047728.1); similar to hypothetical protein PMN2A_1395 [Prochlorococcus marinus str. NATL2A] (GB:YP_292586.1) -0.713417764667782 -6.33014605682927 0.000168348401322888 0.00966491810423781 8.23944606574916 16.7089910124186 -0.713417764667782 0.131905589120198 AT5G47040_at 9.57661530548362 9.592696387112 10.2137187902266 10.2068978491936 10.2900734052631 10.0892459840979 10.3231733249096 10.2017270739700 10.3660275470374 10.4535352109877 10.6242620909468 10.4486685715832 10.4487831657522 10.4832242121003 10.3273430775119 10.6053580466174 10.3216964648485 10.4176955634421 10.2991415977823 0.07519867655993 0.0765231109251594 0.0747290975986944 0.0751828739010513 0.0762969844594794 0.07513178806817 0.0781236603512449 0.0751764538895 0.0819844836442584 0.077860978758046 0.0749048015443225 0.0744189189572933 0.0744189189572933 0.0834492903183627 0.0761370931230503 0.0744449350563555 0.0785134268625221 0.0793165759571104 0.0779937460501448 5 5 - 19110590 19111554 19111197.818 19110379 19115942 - gene protein_coding_gene TRUE TRUE AT5G47040.1 Lon protease homolog 1, mitochondrial (LON) Identical to Lon protease homolog 1, mitochondrial precursor (EC 3.4.21.-) (LON) [Arabidopsis Thaliana] (GB:O64948); similar to LON_ARA_ARA (Lon protease homolog gene), ATP binding / ATP-dependent peptidase/ serine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G26860.1); similar to Lon protease homolog 1, mitochondrial precursor (GB:P93647); similar to Lon protease [Dichanthelium lanu (GB:AAK62365.1); similar to Lon protease [Oryza sativa (indica cultivar-group)] (GB:AAM95459.1); contains InterPro domain Peptidase S16, active site; (InterPro:IPR008268); contains InterPro domain Peptidase S16, lon C-terminal; (InterPro:IPR008269); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Peptidase S16, ATP-dependent protease La; (InterPro:IPR004815); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.462768029234677 -6.32564536590168 0.000169212192618974 0.00968744863683961 8.2352813151232 20.4780336905501 -0.462768029234677 0.0407270727582038 AT5G15230_at 9.15439058522332 9.10455984988417 7.89880342474604 7.94312712103848 8.45562409926801 8.4109652198957 8.76221201945164 8.85945115006128 7.29681592388132 8.37203897670429 10.0895246061394 10.2374951349843 8.96355533533591 9.38669755765866 10.3795109417242 8.98230247782856 8.18341710907566 9.71651111255726 8.11769709633323 0.144513280170802 0.137972670687891 0.157551732703306 0.156192588848387 0.141660147989269 0.148900505998373 0.143119397724613 0.139720402543406 0.157367740097704 0.146346584425281 0.137198020268154 0.137198020268154 0.151862212764402 0.142721150556355 0.144074851428295 0.140550045579281 0.167190915623956 0.149872505074838 0.140753728902144 5 5|0 +|/ 4945030 4945972 4945736.25 4944903 4946219 + gene protein_coding_gene TRUE TRUE AT5G15230.1|AT5G15230.2 GASA4 (GAST1 PROTEIN HOMOLOG 4) gibberellin-regulated (GASA4) Identical to Gibberellin-regulated protein 4 precursor (GASA4) [Arabidopsis Thaliana] (GB:P46690;GB:O49593); similar to gibberellin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G74670.1); similar to (GB:AAA74480.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) -0.437570471699146 -6.31590227865522 0.00017109880142755 0.0097411890924826 8.22625459816059 17.2842554087224 -0.437570471699146 0.0218196858423088 AT5G64780_at 5.17768959483416 5.45478793898576 6.07887449803464 6.05586040874806 6.14953507874233 5.88866033005602 5.41945883761362 5.47106005324765 5.13247289195682 4.8180881784532 5.0580934531563 5.98578738320403 5.8579582094192 5.28701015723961 5.95168677470116 5.57564819659862 5.14948292826454 5.26703863788816 5.73676459578907 0.240400889950028 0.233858193396983 0.254776742576502 0.236141342022641 0.230404622815992 0.242887448675092 0.235419680538538 0.230570060599406 0.257132437043604 0.262823614130630 0.234862113226477 0.230404622815992 0.235009057250467 0.24564093935669 0.237453293862573 0.230404622815992 0.239092213475441 0.238741261496945 0.237494965694731 5 5 - 25917942 25919143 25918520.273 25917785 25919351 - gene protein_coding_gene TRUE TRUE AT5G64780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09830.1); similar to hypothetical protein MtrDRAFT_AC141113g10v1 [Medicago truncatula] (GB:ABE94618.1) -0.512756438326405 -6.28899363182842 0.000176429997232895 0.00996192464120764 8.2012470173345 11.0848392290121 -0.512756438326405 0.0665825340905791 AT5G08180_at 6.22670993222678 6.61357433247816 6.48721298717953 6.77800478681812 6.77546899912729 6.41236906475857 6.7807828927289 6.37928067804987 5.64381785969361 5.5671910633045 5.83279187658050 6.54554235843124 5.93880552964979 5.54637108671612 6.64491564478739 5.89886316400186 6.34904881803618 6.12846910603995 5.3343549210271 0.210682897613545 0.209301884454047 0.213039046382713 0.210124741610926 0.206323872314272 0.216696543662816 0.210171856462251 0.212856184470899 0.240672960930601 0.229235379358885 0.213150639991448 0.206323872314272 0.219304037745282 0.214326520457253 0.212059939095381 0.207380229762933 0.206323872314272 0.213351623107473 0.225159921854160 5 5|0 -|/ 2631872 2633347 2632404.8 2631655 2633456 - gene protein_coding_gene TRUE TRUE AT5G08180.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Identical to H/ACA ribonucleoprotein complex subunit 2-like protein (Nhp2-like protein) [Arabidopsis Thaliana] (GB:Q9LEY9); similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT4G22380.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_505678.1); similar to Os06g0274200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057374.1); similar to Os02g0728600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048001.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.686320819649846 -6.27815389380243 0.000178628757619147 0.0100584421315481 8.19114090214996 12.3695365738570 -0.686320819649846 0.125660748903660 AT5G07530_at 4.96724751982382 4.50665756609681 5.05902972248938 5.18679509659825 4.15919522165168 4.87043203813573 4.50657014789577 4.35741921722549 4.99628133720393 4.69858308482164 4.75237125350513 4.61772139365940 4.60269828676086 4.89683583663694 4.79741469481269 4.75087659499262 5.44435816619143 4.80364680443809 4.78167574197854 0.169365604128642 0.170420143319054 0.172227982059798 0.166183259873922 0.171126193291603 0.174337905530900 0.169765533131462 0.172889064064888 0.184656731657519 0.164725784900881 0.168424736454970 0.169044329561361 0.165251963406209 0.173064020103011 0.167178545964419 0.164760677465257 0.164725784900881 0.168947068341923 0.164725784900881 5 5 - 2382683 2383130 2382923.545 2382469 2384522 - gene protein_coding_gene TRUE TRUE AT5G07530.1 GRP17 (Glycine rich protein 17) encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. similar to GRP16 (Glycine rich protein 16), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G07540.1); similar to hypothetical protein [Phaseolus vulgaris] (GB:ABH05945.1); contains InterPro domain Oleosin; (InterPro:IPR000136) -0.771630337421688 -6.26760612800044 0.000180797124351121 0.0101527254376751 8.18128920995737 9.53104519967762 -0.771630337421688 0.15052482330654 AT5G60960_at 5.0280731236586 5.24176754612308 6.04697685279831 5.84974953255248 5.49853739517148 5.00009108242844 5.5905634848105 5.95490422795743 5.25270539355089 5.84181278964696 6.27585712628498 6.98138378687305 5.93853350106273 6.31311143278081 6.68356658544204 6.34527765619096 6.0757290854466 5.7103341011359 6.10335348604033 0.205810214145213 0.207610412875517 0.2068262301062 0.215168021746414 0.206824291823124 0.212926380500592 0.206329702949055 0.211447503788726 0.219811251929483 0.205595497120578 0.209812418417657 0.212140653079003 0.209683819257268 0.212080484658022 0.219357657512324 0.212069830884958 0.208140685610378 0.208658709603360 0.20631152377995 5 5 - 24545694 24546139 24545923.818 24545476 24547237 - gene protein_coding_gene TRUE TRUE AT5G60960.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61370.1); similar to Os07g0603900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060217.1); similar to Os02g0601600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047351.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD22160.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.658078425681883 -6.24889165870225 0.000184715636639620 0.0103445071781142 8.16376649141416 11.5378819302616 -0.658078425681883 0.118103541891935 AT5G16630_at 7.19085212810314 7.18294679529635 8.02312502678224 7.85933384642036 8.58517866569339 8.07120642610652 8.21818054567938 7.80635010837223 7.90892902841427 7.4497354623902 7.86678082364762 8.02520268812408 7.79092047888639 8.0935091490123 7.37536132156901 8.36528048916222 7.74891632858718 7.61715007282826 8.12007490540732 0.159233676855053 0.153381103885305 0.152276325150075 0.157772657603078 0.154876276142287 0.153707769367425 0.163415496656450 0.158516932451748 0.166064594662363 0.155177900518912 0.154266251915556 0.154022553845141 0.161566388808032 0.151472102400911 0.153882659751468 0.152014108307937 0.161731331910216 0.151468149175043 0.161404457057384 5 5|0 +|/ 5458776 5459433 5459023.9 5454806 5459620 + gene protein_coding_gene TRUE TRUE AT5G16630.1|AT5G16630.2 DNA repair protein Rad4 family|damaged DNA binding similar to Os08g0427500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061843.1); similar to PREDICTED: similar to DNA-repair protein complementing XP-C cells homolog (Xeroderma pigmentosum group C complementing protein homolog) (p125) [Rattus norve (GB:XP_232194.2); contains InterPro domain DNA repair protein Rad4; (InterPro:IPR004583) -0.653607318085658 -6.22646751070371 0.000189533794090195 0.0105568049789945 8.14269727313352 15.7104650099972 -0.653607318085658 0.117455786206173 AT5G57850_at 6.095517106506 5.83337458518227 6.4877979670745 6.40287646940928 6.58791559129794 6.72269367685744 6.11935415704924 6.12093597526032 5.43649883903522 5.97628302402323 6.761487674154 6.97907054469886 6.52077673600938 6.46728280406136 6.74483439322123 6.63469309105679 5.79946812877986 6.47318638667695 6.35026392047796 0.174512995102372 0.171421380062021 0.167885448614041 0.172533237284823 0.171981410863563 0.173748362916991 0.177098783716592 0.179269637686613 0.19538578897536 0.169062214657566 0.176506943956345 0.169266557543028 0.172123807169506 0.173041265243977 0.175104001410749 0.167885448614041 0.184529831919661 0.182467866984430 0.172064606989049 5 5 - 23452798 23453444 23453173.455 23452517 23454553 - gene protein_coding_gene TRUE TRUE AT5G57850.1 aminotransferase class IV family protein Identical to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8L493;GB:Q9FJM9); similar to aminotransferase class IV family protein [Arabidopsis thaliana] (TAIR:AT3G05190.1); similar to 4-amino-4-deoxychorismate lyase [Lycopersicon esculentum] (GB:AAT74744.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544) -0.476285992311562 -6.20421664797321 0.000194451010372444 0.0107183162736630 8.1217119150035 12.5306158065852 -0.476285992311562 0.0530852047664642 AT5G26960_at 6.10157408186563 6.0107074124633 6.07188758788209 6.30211669437678 6.56143307039784 6.25691028891193 5.62331893029519 5.5407574514572 6.46327661662146 5.76699502546405 6.4569867273751 6.67674715689008 6.69978374730264 6.45139402534805 6.70871033895727 7.07148253102636 6.47289177720688 6.49084954160046 5.90308693357408 0.212502117064850 0.210193880320850 0.218143624714306 0.212742189718651 0.217407665004007 0.213192671373798 0.218940764149827 0.228106252074263 0.219684700345475 0.212277976377205 0.225821890238173 0.210193880320850 0.217030099232197 0.214888914218755 0.214961874390617 0.216182746185160 0.224518392039126 0.214427845455636 0.216340280160155 5 5 - 9484933 9485440 9485188.909 9484737 9486152 - gene protein_coding_gene TRUE TRUE AT5G26960.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67480.2); similar to Kelch motif family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95749.1); similar to Os11g0138700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065701.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.50963090466 -6.16828751150456 0.000202688293796546 0.0110206973373631 8.08765958007417 12.3951174843395 -0.50963090466 0.069397448060194 AT5G14800_at 6.7224523513453 6.67023613507097 6.76279376922646 7.3783608276887 7.04893281389329 7.01491669446883 6.30041398296543 6.73386861431468 6.25024477211054 6.29427541018412 6.4714746390537 6.24420542187423 6.32242646604809 6.4580604723067 7.07905957217663 6.48577143759768 6.78693862855584 6.42065360765105 6.261682451836 0.198270973574372 0.197824882087578 0.200511903487475 0.215431163963499 0.198006578873047 0.218329226188951 0.212286845055548 0.199121311486636 0.196560654849585 0.208786446957989 0.196045699299249 0.199022555578754 0.198453809318628 0.202001746910088 0.205405301451707 0.19628043703692 0.204145304748630 0.202556467495888 0.202169397830388 5 5|0 -|/ 4786207 4786928 4786513.667 4785965 4787842 - gene protein_coding_gene TRUE TRUE AT5G14800.1|AT5G14800.2 P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase|P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis. Identical to Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C reductase) (PROC1) [Arabidopsis Thaliana] (GB:P54904); similar to Pyrroline-5-carboxylate reductase (P5CR) (P5C reductase) (GB:P17817); contains InterPro domain Delta 1-pyrroline-5-carboxylate reductase; (InterPro:IPR000304); contains InterPro domain NADP oxidoreductase, coenzyme F420-dependent; (InterPro:IPR004455) -0.690707252446258 -6.16364367624726 0.000203780534879852 0.0110508503132589 8.08324325730365 13.2301508946391 -0.690707252446258 0.130732387387621 AT5G39570_at 11.8159094075679 11.8452674422143 11.8470384237308 11.9476645276258 11.8693213929772 11.7083254790258 11.6716102792773 11.7856722588173 11.8515879375581 12.0386332108127 12.1187552966253 12.0215149000006 12.0853386684955 11.9452298907835 11.8071595023181 11.9978457502803 11.9605720919785 12.0321046981767 11.9126198627773 0.0776427916688041 0.0722750668489415 0.0764555499050181 0.0726926509988876 0.0730251495179667 0.0743315550220193 0.072180323552047 0.0713697283881546 0.0767992556287674 0.0731340362509687 0.0725831999888431 0.075658072675839 0.0732302107519111 0.073594161161363 0.0763267121929557 0.072266516333826 0.0739659900410533 0.0728713809138149 0.0727250277265115 5 5|0 +|/ 15862194 15863158 15862828.9 15861187 15863406 + gene protein_coding_gene TRUE TRUE AT5G39570.1 unknown protein -0.447318582308934 -6.15862094329201 0.000204969147756717 0.0110860569990913 8.07846271008836 23.7765238698454 -0.447318582308934 0.0386641944609966 AT5G22340_at 7.64408061603672 7.64428294618572 7.70534425027062 7.45980656292163 8.23434052680119 8.07410107594189 8.14320276117128 8.00197270005456 8.096530463329 8.11083453050785 8.96850617217994 9.35781481242537 8.55268546429948 8.73251948485769 9.47188197717033 8.81496190930995 8.53579952931217 8.61924160911122 7.9997008667635 0.110936342871093 0.101713056964879 0.104112683173049 0.105819063660001 0.103028311709799 0.103616440124507 0.105392298402978 0.104709855668788 0.111453227950503 0.110944444879798 0.110117510115203 0.111481345152402 0.107962513505677 0.102049173956333 0.109531584565027 0.101882424100531 0.105107733655340 0.103170554447654 0.109931795510375 5 5|0 +|/ 7395295 7396522 7396025.444 7394447 7396878 + gene protein_coding_gene TRUE TRUE AT5G22340.1|AT5G22340.2 similar to Os03g0322600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049968.1) -0.478549271844576 -6.14812659286446 0.000207477155524527 0.0111629538889953 8.06846131730143 16.3387405916063 -0.478549271844576 0.0563189669598805 AT5G19830_at 4.72900574896533 4.28801256430922 4.90616588261403 4.46889696892395 5.13809411812 5.2223461861418 4.7651487596376 4.47535432538946 4.75013983464041 4.69302944386377 5.10461821098779 4.22703677604698 5.38658341871112 4.61641279132698 4.8606592077625 4.90151144989094 5.33410470175229 4.717806562384 4.87399123477985 0.249127529645934 0.248066364516574 0.244364666426441 0.249435863220769 0.251294737791518 0.250830884466249 0.252161615993703 0.242437280426384 0.268687586187987 0.246183407115732 0.250869344367266 0.244465766685718 0.249413098063667 0.244382651258544 0.248761748208309 0.247741794734331 0.243948149258186 0.271825056530816 0.242431088940438 5 0|5 /|+ 6704207 6705021 6704626.4 6703152 6705251 + gene protein_coding_gene TRUE TRUE AT5G19830.1 aminoacyl-tRNA hydrolase similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G16140.2); similar to Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 (GB:1RYN); contains InterPro domain Peptidyl-tRNA hydrolase; (InterPro:IPR001328) -0.65148660241302 -6.14383294417188 0.000208512940868809 0.0111893909505118 8.06436426073026 9.58211730807225 -0.65148660241302 0.119490243719152 AT5G48220_at 9.27290350014345 9.30765574726949 9.4595905061712 9.27809966070272 9.73727427697395 9.39784423954938 9.82750642478744 9.65363150317917 9.88356103982656 9.5690861796301 10.0793889259506 10.2322534343713 9.86041008705745 10.1423388382376 10.2966209467904 9.9626460943544 9.74940644668879 9.81282254167042 9.33326355188126 0.0623873758064611 0.059541942618287 0.0639440919133693 0.0612909841101412 0.062545215962124 0.0602447982050503 0.0628039827046818 0.0627823701997132 0.0645490612409166 0.0604879245769494 0.0604866046440652 0.0622854628979822 0.0613501189782734 0.0594519234761996 0.0612144446215078 0.0612848754527478 0.0698635524024142 0.0608497151247591 0.0602717313244667 5 5|0 +|/ 19568130 19569233 19568827.333 19567024 19569493 + gene protein_coding_gene TRUE TRUE AT5G48220.1|AT5G48220.2 indole-3-glycerol phosphate synthase, putative|indole-3-glycerol-phosphate synthase similar to indole-3-glycerol phosphate synthase (IGPS) [Arabidopsis thaliana] (TAIR:AT2G04400.1); similar to OSIGBa0115M15.12 [Oryza sativa (indica cultivar-group)] (GB:CAH66774.1); similar to indole-3-glycerol phosphate synthase (GB:AAA60380.1); similar to OSJNBa0016O02.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE05999.3); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Indole-3-glycerol phosphate synthase; (InterPro:IPR001468) -0.513261883813563 -6.0960859889096 0.000220420364300609 0.0117975737226994 8.01860349295582 19.2979579847652 -0.513261883813563 0.0733375946306471 AT5G45050_at 5.3772904029337 5.38461542423926 6.0362040743212 5.94036670789512 6.24697652009475 6.18571101658984 5.03785241882165 5.25952946942153 5.60686417513280 5.39506755885404 6.12122111860182 6.02551417123927 5.79294100755592 6.00077097934194 5.64554374883269 6.01617163935655 5.69574245559161 6.07878260680025 5.93305748885805 0.189127457355334 0.178091103371671 0.185001187568906 0.180062653225106 0.180977481773755 0.182668934611311 0.178982457516259 0.183690636652009 0.212506531529219 0.179750447944769 0.188666239992757 0.190064687578670 0.179500590551285 0.178091103371671 0.182350829361014 0.19295652141188 0.185383200707541 0.184030096578113 0.18312911076204 5 5 - 18194319 18194883 18194543.091 18194141 18199032 - gene protein_coding_gene TRUE TRUE AT5G45050.1|AT5G45050.2 TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16) (WRKY16) [Arabidopsis Thaliana] (GB:Q9FL92); similar to SLH1 (sensitive to low humidity 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45260.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to LIM domain-containing protein / disease resistance protein-related [Arabidopsis thaliana] (TAIR:AT5G17890.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16) (WRKY16) [Arabidopsis Thaliana] (GB:Q9FL92); similar to SLH1 (sensitive to low humidity 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45260.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to LIM domain-containing protein / disease resistance protein-related [Arabidopsis thaliana] (TAIR:AT5G17890.1); similar to TIR [Medicago truncatula] (GB:ABD33387.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.448854177830494 -6.08208321864223 0.000224052029945075 0.0119608036767083 8.00511341478686 11.4671094410546 -0.448854177830494 0.0431363295614286 AT5G12150_at 9.27135866926457 9.52548341986098 9.4442008142399 9.48433077009883 9.99219931037756 9.74675679059108 10.0663502943032 10.0369033433194 10.2450028136715 10.4283359159198 10.9733572766608 11.0599174707524 10.6503282966265 10.6893724481912 10.6315908721060 10.8626217422458 10.1631222143204 10.8062691217610 10.3147139214319 0.0951722404361714 0.0960028399692672 0.0971286159417123 0.0920644611659075 0.094376292407995 0.0934866540115373 0.093845718251815 0.0922014109742299 0.103833070871694 0.0926821874097725 0.0924270217676686 0.0918700699777627 0.0918700699777627 0.0939078872697857 0.0961364456297765 0.0918700699777627 0.095626291091769 0.0979973171689412 0.0928182310007177 5 5 - 3924434 3925131 3924785.636 3924127 3930306 - gene protein_coding_gene TRUE TRUE AT5G12150.1 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein similar to pleckstrin homology (PH) domain-containing protein-related / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G24580.1); similar to pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19390.2); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73663.1); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD30338.1); similar to pleckstriny domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96033.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.484451864326183 -6.0758029723538 0.000225702043680475 0.0119866199289391 7.99905279753458 20.2254095835107 -0.484451864326183 0.0617441375029922 AT5G13650_at 10.6929627179172 10.7344911798182 11.1856647540752 11.1692220185291 11.3770116772303 11.2005139442806 11.9673045393750 11.7870586371641 10.8333723866236 11.1756326777475 11.1782266584356 11.1299456325282 11.4807572156288 11.3024854089580 10.9576356924514 11.4917585285578 11.6011233932774 11.1502480804875 10.972817083945 0.0866376959814715 0.0831480636583467 0.0843393040037235 0.0843193568246327 0.0827625609823074 0.0839792629995253 0.083560291795368 0.0847666340785919 0.093572821688721 0.0827625609823074 0.0829660159109377 0.082787344874249 0.0827625609823074 0.0850716801164962 0.0855284624072685 0.08369457195105 0.0882380733278265 0.0881128695170236 0.0840724269449196 5 5|0 +|/ 4401091 4402233 4401671.5 4397749 4402695 + gene protein_coding_gene TRUE TRUE AT5G13650.1|AT5G13650.2 elongation factor family protein similar to GTP binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT2G31060.2); similar to Mitochondrial translation elongation factor Tu (ISS) [Ostreococcus tauri] (GB:CAL57456.1); similar to GTP-binding protein TypA [Trifolium pratense] (GB:AAR17698.1); similar to GTP-binding protein TypA [Herpetosiphon aurantiacus ATCC 23779] (GB:ZP_01425863.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain GTP-binding protein TypA; (InterPro:IPR006298); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.448272183264048 -6.04706912229869 0.000233422664025202 0.0123329118798808 7.97124217775293 22.4045103297467 -0.448272183264048 0.0443354470014375 AT5G11790_at 7.71812034724196 7.4561593028879 7.32950142384445 6.8493891845832 7.78993306451110 7.12362573443061 9.68874274427943 9.1700369322424 8.27047108557531 8.72444786718206 10.2966553769626 10.4047483821985 9.60340127454266 10.0449265858456 10.1245233269670 9.59968559138092 9.0788428011242 9.72441179657442 8.83832304273432 0.178375984859531 0.190078826000966 0.183537637976072 0.199189653327185 0.178604829180326 0.190151694228333 0.175290475871307 0.175707950009129 0.194175453475963 0.177839722310578 0.175794108231295 0.180794282284615 0.172538519277330 0.178268525290437 0.176354334220414 0.175227325127121 0.186063333512773 0.176429499006071 0.177051562415891 5 5 + 3801467 3802470 3802180.727 3799551 3802793 + gene protein_coding_gene TRUE TRUE AT5G11790.1 Ndr family protein similar to Ndr family protein [Arabidopsis thaliana] (TAIR:AT5G56750.1); similar to Os02g0224800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046336.1); similar to Os01g0192600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042278.1); similar to putative pollen specific protein SF21 [Oryza sativa (japonica cultivar-group)] (GB:AAV59450.1); contains InterPro domain Ndr; (InterPro:IPR004142) -0.826671649055783 -6.04021615179724 0.000235306363275639 0.0123688443051177 7.96458957218939 17.1260536203093 -0.826671649055783 0.174103014278022 AT5G10360_at 9.86789134417885 10.1794959255899 10.0324174300834 10.1995732842748 10.1439463557828 10.1046483904052 9.97224475902188 10.1025327234462 9.66463949018412 9.63477062773765 10.0185151198012 10.2005159811452 9.70359420414196 9.89165215558634 10.1921366856726 9.46096849294082 9.6204161467307 9.66135431224725 9.37494017553927 0.109964665874146 0.109860985375050 0.107611091879858 0.112126903821256 0.112152133160329 0.107530701671102 0.107853148058425 0.112979828417826 0.114300096493921 0.110437808048316 0.115070465658479 0.108097694249086 0.112573653703967 0.112745723794245 0.113460032849156 0.109880003660413 0.117152575960686 0.109990103057252 0.114881126389382 5 5|0 -|/ 3258795 3259453 3259085.3 3258475 3260230 - gene protein_coding_gene TRUE TRUE AT5G10360.1 EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G31700.1); similar to 117M18_18 [Brassica rapa] (GB:AAZ66937.1); contains InterPro domain Ribosomal protein S6e; (InterPro:IPR001377) -0.488939341895005 -6.02529345868295 0.000239465966122050 0.0124916493587069 7.95007671205554 19.776224227483 -0.488939341895005 0.0655687150055043 AT5G27850_at 10.7201476018169 10.7806383903476 10.8156600379611 10.8994874169003 10.8499903711141 10.7084627660991 10.7613681263558 10.6980868744878 10.2543182285307 10.1609010058198 10.4457291872258 10.8815114218684 10.3568139833062 10.1911730333463 11.0015483678674 10.2539613503837 10.4141999466573 10.5496283907032 10.2081032645881 0.0658536438583594 0.0667595304504034 0.0665559522323395 0.0680207512665042 0.068733749579032 0.0686922609790328 0.0661095914022427 0.0679879299616019 0.0720417868859706 0.0658709895975536 0.0665430234041508 0.0658536438583594 0.0686391441314725 0.0703654763466124 0.0673421746620215 0.0669638324048614 0.0683073221198201 0.0670525406011071 0.0659920086493957 5 5|0 +|/ 9873388 9874206 9873812.4 9873156 9874602 + gene protein_coding_gene TRUE TRUE AT5G27850.1 60S ribosomal protein L18 (RPL18C) Identical to 60S ribosomal protein L18-3 (RPL18C) [Arabidopsis Thaliana] (GB:Q940B0); similar to RPL18 (RIBOSOMAL PROTEIN L18), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G05590.1); similar to cytoplasmic ribosomal protein L18 (GB:AAA69928.1); contains InterPro domain Ribosomal protein L18e; (InterPro:IPR000039) -0.424653520241575 -5.96800445356432 0.000256197686649257 0.0132969558407238 7.89402292429743 21.1390276363767 -0.424653520241575 0.0322461466094844 AT5G15090_at 8.97001442223625 8.98882185754818 9.4580632593779 9.49296655330985 9.2966614597968 9.03783782692155 10.0082205878378 10.0623021135642 9.39080572996222 9.67833933064989 10.2256189561569 10.2153836349536 10.1618850460158 10.3646292706949 10.223704550417 10.0597354766903 9.91888469485097 10.0714189709425 9.28128448323957 0.125586859976686 0.121809324943851 0.134729772104518 0.129550005695046 0.121508233746013 0.130024866779624 0.123677696297378 0.127971809822853 0.135147329386999 0.125369299834901 0.122778279865023 0.122564910886749 0.125541896966434 0.130927870537300 0.125323332748404 0.123952019730804 0.127170430919204 0.123874137507744 0.126408247675079 5 5 - 4889705 4890397 4889962 4889298 4891497 - gene protein_coding_gene TRUE TRUE AT5G15090.1 porin, putative / voltage-dependent anion-selective channel protein, putative Identical to Outer mitochondrial membrane protein porin 2 (Voltage-dependent anion- selective channel protein 2) (VDAC 2) (HSR2) [Arabidopsis Thaliana] (GB:Q9SMX3;GB:Q8L815;GB:Q8LET4); similar to porin, putative [Arabidopsis thaliana] (TAIR:AT3G01280.1); similar to unknown [Brassica rapa] (GB:ABB97031.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) -0.445166416286856 -5.96095870415026 0.000258342159049956 0.0133744824894660 7.88709191328417 19.2170113882611 -0.445166416286856 0.0462695371168926 AT5G46290_at 8.61515270547584 8.73216647962425 8.6099505677913 8.60072536967296 8.73807308880161 8.5130853910238 9.34410613948664 9.42461101062042 8.36509131527739 8.71995679170225 9.8080771382515 10.0932728841974 9.4571650300286 9.49175382951204 10.2747498762592 9.56051466316212 8.86460624887427 9.5535784901694 8.56279727582496 0.122195687028545 0.118332218126205 0.131454501945366 0.124609940480772 0.125626426933541 0.136206014843150 0.124815660498933 0.120967516857679 0.136734539859602 0.121396785024661 0.123259519632917 0.122790888087282 0.120459889341541 0.124044044008155 0.122363426721093 0.122197495530511 0.134621554812972 0.128184951467332 0.119371796657294 5 5|0 -|/ 18791687 18792497 18792087.7 18791313 18793962 - gene protein_coding_gene TRUE TRUE AT5G46290.1|AT5G46290.2 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); fatty-acid synthase 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA, Identical to 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I) (KAS1) [Arabidopsis Thaliana] (GB:P52410;GB:Q9FL32); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.1); similar to 3-ketoacyl-acyl carrier protein synthase I (GB:AAC49118.1); similar to beta-ketoacyl-ACP synthase I [Perilla frutescens] (GB:AAC04691.1); similar to beta-ketoacyl-ACP synthase (GB:AAA33873.1); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794)|Identical to 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I) (KAS1) [Arabidopsis Thaliana] (GB:P52410;GB:Q9FL32); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.1); similar to 3-ketoacyl-acyl carrier protein synthase I (GB:AAC49118.1); similar to beta-ketoacyl-ACP synthase I [Perilla frutescens] (GB:AAC04691.1); similar to beta-ketoacyl-ACP synthetase I [Glycine max] (GB:AAF61730.1); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794) -0.442396000259250 -5.92838674622823 0.000268514059952914 0.0137624218872470 7.85494411894696 17.9158571262246 -0.442396000259250 0.0460721524134929 AT5G57030_at 8.84707632357846 9.02045164224475 9.02670365922803 8.97660108135226 9.45231656075822 8.75224854858635 10.0793336213492 9.81142786287973 9.35070500207785 9.6175036446979 10.0191137182814 10.4649382514991 9.66452836925839 9.90742593350823 10.3259595839221 10.0596218389073 9.17538757000112 9.91580768923955 9.41283271455365 0.144832164243094 0.13810406496796 0.147287893545746 0.155215417913964 0.137535484607368 0.15371804931158 0.142968687169876 0.142256561774857 0.166257488928772 0.134876288387897 0.141884828297115 0.140297351944216 0.139804558597259 0.140008541974984 0.143648068306117 0.142292294796941 0.159722633080466 0.139199132952555 0.134942128378083 5 5|0 +|/ 23096117 23096992 23096543.667 23094491 23097279 + gene protein_coding_gene TRUE TRUE AT5G57030.1 LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase Identical to Lycopene epsilon cyclase, chloroplast precursor (EC 1.14.-.-) [Arabidopsis Thaliana] (GB:Q38932;GB:Q9LDV8); similar to LYC (LYCOPENE CYCLASE), lycopene beta cyclase [Arabidopsis thaliana] (TAIR:AT3G10230.1); similar to putative lycopene epsilon cyclase [Daucus carota subsp. sativus] (GB:ABB52073.1); similar to lycopene epsilon cyclase (GB:AAB53336.1); similar to lycopene epsilon-cyclase [Citrus unshiu] (GB:BAE93359.1); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027); contains InterPro domain Lycopene cyclase, beta and epsilon; (InterPro:IPR010108); contains InterPro domain Lycopene beta and epsilon cyclase; (InterPro:IPR008671) -0.672169295760273 -5.92044486342888 0.000271060046495354 0.0138583544155864 7.84707911030824 18.9467424073823 -0.672169295760273 0.133424807602621 AT5G58270_at 8.91849386855853 8.80634157617804 9.35312159920929 9.32132198986538 9.49912475717263 9.2065675099608 9.40289594102234 9.2924395596967 9.20590451084038 9.35404836643327 9.67649176509092 9.59709805426863 9.50226847560666 9.64423132290526 9.57342783899843 9.66106880496633 9.25314607070123 9.54182968849276 9.18937642341276 0.0858590772034726 0.0835437515233224 0.0922803442440238 0.0834206637216521 0.083587512012341 0.0877694632340839 0.0835997155865612 0.0822974039605185 0.0970298520805323 0.0818322346773107 0.0873779041297505 0.0816186840381298 0.0824225159320859 0.0834569335716863 0.0861779567437028 0.0816186840381298 0.0903111263442963 0.087466256698679 0.0816186840381298 5 5|0 +|/ 23582883 23584196 23583575.222 23579368 23584416 + gene protein_coding_gene TRUE TRUE AT5G58270.1 STA1 (STARIK 1); ATPase, coupled to transmembrane movement of substances Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance. similar to ATM1 (Arabidopsis thaliana ABC transported of the mitochondria 1), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G28630.1); similar to ATM2 (Arabidopsis thaliana ABC transported of the mitochondria 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G28620.1); similar to PREDICTED: similar to ABC transporter-7, partial [Strongylocentrotus purpuratus] (GB:XP_782463.2); similar to PREDICTED: similar to ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Gallus gallus] (GB:XP_420301.1); similar to PREDICTED: similar to ABC transporter-7 [Strongylocentrotus purpuratus] (GB:XP_001187214.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.463113402727232 -5.91262009632646 0.000273594297655493 0.0139186746972939 7.83931988434767 18.6280241933034 -0.463113402727232 0.0577545684856927 AT5G10390_at 4.6650026230491 4.82614264570251 6.53000177076366 6.62437824823559 4.4983253097331 4.63857299565928 5.73015723078577 5.78529569965537 5.22333428740288 5.43825280451188 5.69633911921336 6.80529881121256 5.4865121774619 6.03151752310006 6.92086795445643 5.78658041858003 5.35014984747119 5.16766953316508 4.72911502324169 0.234599393634953 0.221809576863217 0.219881548641972 0.219293285561538 0.219569814693201 0.226673034099360 0.217569048805696 0.215610866662038 0.232901206612279 0.21671246302376 0.227421434523327 0.216618702896749 0.222470417483595 0.225749975211277 0.229962120274477 0.215610866662038 0.229261642612941 0.228013622631047 0.225450613675732 5 5 - 3269110 3269440 3269266.545 3268848 3269551 - gene protein_coding_gene TRUE TRUE AT5G10390.1 histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10400.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT3G27360.1); similar to Histone H3.2 (GB:P68427); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.431988768520435 -5.88804596778545 0.00028172299554755 0.0142578662045303 7.81488566141105 10.9301600461821 -0.431988768520435 0.0415268782629272 AT5G07240_at 7.56838889054701 8.0740903391898 8.06507944609663 8.33713376240832 8.48733566647762 8.35185480723906 8.40762924614139 8.57536820128529 9.18425717807564 8.70272291204516 9.78417217780925 9.4388181769689 9.02117226820865 9.46464286604147 8.76879097031896 8.98475911215306 8.51922318411392 9.12808342149491 8.52527707465278 0.180695958319628 0.161846183608257 0.180362095769974 0.168445967339352 0.160207531271448 0.166088498035719 0.165200246747017 0.161101152141418 0.170598848840733 0.157757197807900 0.161387768938912 0.164165039821240 0.161042447385290 0.167496636921334 0.173314524865308 0.165358043772534 0.168123528334125 0.159722334852699 0.158282078419556 5 5 + 2273483 2274021 2273778 2271920 2274289 + gene protein_coding_gene TRUE TRUE AT5G07240.1 IQD24 (IQ-domain 24); calmodulin binding similar to IQD23 (IQ-domain 23), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G62070.1); similar to IQ calmodulin-binding re (GB:ABE86306.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.583853154811844 -5.88620404593442 0.000282342811999567 0.0142578662045303 7.813050191262 17.2047567917881 -0.583853154811844 0.106148820138803 AT5G62430_at 8.05884041719813 8.27817549205288 8.99790714383879 9.12329959999189 9.22370774290023 8.93126193478437 10.5614098387258 10.4968581639425 8.71055583058201 9.5850593704958 10.1166356967075 10.2443017451518 10.4607575605452 10.103569807823 9.56686329207615 10.3220303514580 10.3098539616918 10.2192188965104 9.96164469823175 0.136906261904785 0.126146241058259 0.128070002170591 0.124664621987058 0.118968890253465 0.122292217720923 0.124374901245998 0.124115270073674 0.173121274688787 0.122019828342598 0.121907944628379 0.121530332024612 0.121941899569547 0.130060264499070 0.125802984229309 0.121803149786652 0.120995659436785 0.122521633738989 0.121352145162851 5 5 - 25086551 25087056 25086832.091 25086319 25088160 - gene protein_coding_gene TRUE TRUE AT5G62430.1 CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon. Identical to Dof zinc finger protein DOF5.5 (AtDOF5.5) (DOF5.5) [Arabidopsis Thaliana] (GB:Q8W1E3;GB:Q9FJJ9); similar to CDF3 (CYCLING DOF FACTOR 3), DNA binding / protein binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G47500.1); similar to AOBP (ascorbate oxidase promoter-binding protein) [Cucurbita maxima] (GB:BAA08094.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.481494545595413 -5.87174929403799 0.000287258928232029 0.0144685911385446 7.79862650417116 19.0024278152287 -0.481494545595413 0.0678062121512715 AT5G17230_at 10.8306445308412 10.8528471911001 11.0455705844706 11.0446979381650 11.1540114758159 10.7986084462577 11.7408015775574 11.6194799027408 11.8534246277338 11.6282157376716 12.0981207686411 12.2080476419236 11.7886009964749 11.9852585768216 12.3135673415197 12.2250307861460 11.6852934518735 11.8905083096447 11.4461480010687 0.0631985582420433 0.0617818663620966 0.0642933165193693 0.0657310346509226 0.0614794306390844 0.0693116377514779 0.0630850500464684 0.0613162588632854 0.0657493600472638 0.0632953842548954 0.0608060410046447 0.0608060410046447 0.0657996969523578 0.0608060410046447 0.0615973417840793 0.0608060410046447 0.0638126488961536 0.062815055301317 0.0637401201206204 5 5|0 -|/ 5659887 5660596 5660342.6 5659576 5662867 - gene protein_coding_gene TRUE TRUE AT5G17230.1|AT5G17230.2 PSY (PHYTOENE SYNTHASE); geranylgeranyl-diphosphate geranylgeranyltransferase|PSY (PHYTOENE SYNTHASE) Encodes phytoene synthase. Identical to Phytoene synthase, chloroplast precursor (EC 2.5.1.-) (PSY1) [Arabidopsis Thaliana] (GB:P37271;GB:O22375;GB:Q8LE86); similar to phytoene synthase (GB:AAA32836.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.47519198642633 -5.86856870114925 0.000288353159242806 0.0144685911385446 7.79544808420871 22.9692825090129 -0.47519198642633 0.0651025991361825 AT5G13740_at 8.63185810833265 8.57483722605064 7.51206944397988 7.39487515927999 10.2696295161174 9.80881469153965 8.15022731410745 8.06001641210735 9.71938664037536 9.55521541347638 9.29915981787009 10.0626497795293 10.3014107443586 10.1165785219432 9.79969273798408 10.6106818686026 9.83786701867386 7.73900869157799 9.6352349661499 0.194655711284575 0.185703094807235 0.198092697419502 0.197982329720544 0.191073799196512 0.189010611845068 0.19162172552385 0.182536429170607 0.183394035762136 0.1813664734872 0.181093933193196 0.184468985215015 0.185580382428227 0.188890352563123 0.186458274037131 0.192477382544228 0.195290277081035 0.199562532496997 0.188294681427714 5 5|0 +|/ 4435290 4436442 4435836 4432309 4436671 + gene protein_coding_gene TRUE TRUE AT5G13740.1 ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transporter/ sugar porter similar to ZIFL1 (ZINC INDUCED FACILITATOR-LIKE 1), tetracycline:hydrogen antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT5G13750.1); similar to transporter, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21874.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Tetracycline resistance protein; (InterPro:IPR001958); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.52148135087742 -5.86777298698281 0.000288627622876074 0.0144685911385446 7.79465265046201 18.2290377277234 -0.52148135087742 0.0843318283671583 AT5G23330_at 5.85674557864169 6.52537805023063 7.05188258417268 6.55064802592584 7.14354048835626 6.76334921959419 6.72206798562132 6.19106032163157 5.35293622080222 5.93453458924818 4.82362276842321 5.54176925352657 5.78080752558296 6.17270924670787 5.98977290589737 6.05380660308621 6.25819323500432 5.12731978097575 6.2875539642815 0.210685835510905 0.208559458086829 0.217627434941427 0.208559458086829 0.208559458086829 0.222734605989392 0.214058710787724 0.208559458086829 0.222099549148916 0.209521591367702 0.212798963078264 0.209586661620743 0.223064845170835 0.219867832419882 0.226859855734696 0.215814734550354 0.214628639999789 0.213040590673793 0.209451141121494 5 5 + 7855077 7855676 7855385 7854132 7855816 + gene protein_coding_gene TRUE TRUE AT5G23330.1 riboflavin biosynthesis protein-related similar to riboflavin biosynthesis protein-related [Arabidopsis thaliana] (TAIR:AT5G08340.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72379.1); similar to Os03g0801700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051594.1); similar to riboflavin biosynthesis protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99395.1); contains InterPro domain Riboflavin kinase / FAD synthetase; (InterPro:IPR002606) -0.83422560413965 -5.85417892609668 0.000293360920532789 0.0146451838165729 7.78104709662345 12.3890049099440 -0.83422560413965 0.183537505049649 AT5G09590_at 7.5237478824938 7.70763228954562 8.7236109795912 8.56054480683534 7.69432467825923 7.70372729783561 7.94360901815293 8.18691654838572 6.56599880589811 7.82290183342195 7.83430687791459 8.1574765417682 7.71506945120341 7.32322023796904 7.59915234563 8.2139174097709 7.95575520380886 7.61878209800929 7.07008976867169 0.123687132536529 0.130231867548976 0.125964076491865 0.131895429125241 0.125186794477046 0.131479007658117 0.134065808979093 0.135938922649128 0.144813310278710 0.129747997823552 0.126704103189815 0.126747603351797 0.136945934006745 0.130192852965838 0.126567927794010 0.125892326330730 0.131319955851879 0.135713078333618 0.13627871263342 5 5 + 2977910 2978120 2978001 2975549 2978751 + gene protein_coding_gene TRUE TRUE AT5G09590.1 mtHSC70-2 (HEAT SHOCK PROTEIN 70); ATP binding / unfolded protein binding heat shock protein 70 (Hsc70-5); nuclear similar to MTHSC70-1 (mitochondrial heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G37910.1); similar to CPHSC70-1 (chloroplast heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G24280.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:P37900); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE92899.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:Q01899); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Chaperone DnaK; (InterPro:IPR012725); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.462810524884359 -5.85356828895018 0.000293575517165442 0.0146451838165729 7.78043522074646 15.4831175993490 -0.462810524884359 0.0598706652231027 AT5G51220_at 6.42666193096373 6.49878846194484 7.19766465336284 7.19730313041847 7.07682594189116 6.81128934851529 6.72167546220378 6.59659425692116 5.60011480079157 5.72781150195672 6.11092679310521 6.29105844572351 6.00446907305588 6.46585189855524 6.4484467478687 6.73464336189277 6.40604392636467 6.32443178468432 5.65644049312602 0.222027982992688 0.200371273586483 0.211768924522409 0.200371273586483 0.206993435242705 0.216931415844851 0.205673574078898 0.221599377730939 0.242718050327513 0.211002259586015 0.209048675433174 0.200751010779131 0.205398676407111 0.212869011259907 0.200371273586483 0.210181720819353 0.224474183747562 0.210399813900877 0.202548607788572 5 0|5 /|- 20838566 20839194 20838779.429 20838441 20840492 - gene protein_coding_gene TRUE TRUE AT5G51220.1 ubiquinol-cytochrome C chaperone family protein similar to Ubiquinol cytochrome c reductase assembly protein CBP3 (ISS) [Ostreococcus tauri] (GB:CAL50389.1); similar to Os07g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059673.1); contains InterPro domain Ubiquinol-cytochrome C chaperone; (InterPro:IPR007129) -0.447731785764008 -5.85131896940704 0.000294367476700579 0.0146491350213043 7.7781808020968 12.8206951995432 -0.447731785764008 0.0523064291411801 AT5G52030_at 7.71487802191229 7.91014880275324 8.3352683316336 8.43239773497743 8.35848183408665 8.18821896834235 8.38429410112092 8.35131026331579 7.91530101633312 8.1739353349958 8.44837411681063 8.62411498697625 8.55263936136765 8.79804185949765 8.28073455723807 8.93752516378098 8.6103125971339 8.6478159166654 7.83145945662606 0.110064401217429 0.104730739534462 0.105823559668347 0.108435373795731 0.104730739534462 0.107170085261280 0.109895616182087 0.112027997549056 0.108007110094474 0.108316067297811 0.107014103285983 0.104730739534462 0.105363100617456 0.112754495500899 0.105246860141232 0.104730739534462 0.111406196701159 0.105924989373137 0.107666311356158 5 0|5 /|+ 21146430 21147054 21146686.25 21145355 21147316 + gene protein_coding_gene TRUE TRUE AT5G52030.1|AT5G52030.2 TraB protein-related similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT1G05270.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09227.1); similar to Os08g0545700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062417.1); contains InterPro domain TraB determinant; (InterPro:IPR002816) -0.438198903573391 -5.82289701291806 0.000304578007375637 0.0151206481750316 7.74962166847637 16.5023798018939 -0.438198903573391 0.048220549688217 AT5G47540_at 5.57619654745161 5.73190853349956 5.81946605951797 6.0595194554534 6.50831881103328 5.42700565586459 6.31496794650546 6.62258392744915 6.38532295079145 5.94393291257055 6.7557542887547 7.39763482789092 6.61440519305801 6.1328778933101 6.59217278593323 6.25702871348687 6.21824357591102 5.97979916903844 5.92989136889284 0.238470310851905 0.229564862878513 0.225549917243675 0.234880345246173 0.233340779532322 0.228016616837996 0.232142383459203 0.232282422620661 0.235074149330252 0.244491560701351 0.225752141002897 0.226662545852615 0.225549917243675 0.24385270527801 0.238178493070265 0.225549917243675 0.242103732901409 0.246789031555888 0.232919185050070 5 5|0 -|/ 19300492 19301714 19301109.778 19300492 19302554 - gene protein_coding_gene TRUE TRUE AT5G47540.1 Mo25 family protein Identical to Putative MO25-like protein At5g47540 [Arabidopsis Thaliana] (GB:Q9FGK3); similar to Mo25 family protein [Arabidopsis thaliana] (TAIR:AT4G17270.1); similar to MO25 protein -related [Brassica oleracea] (GB:ABD64974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.88927448444026 -5.81390196419784 0.00030788950648539 0.0152482147309777 7.74055507577947 12.2974318504341 -0.88927448444026 0.200753672703259 AT5G64460_at 9.29341224747018 9.32530585038192 9.38462669539127 9.33188340287475 9.88007951325495 9.54681601740532 10.2941690554221 10.1354356526825 9.81059264995111 10.2364890652157 10.8536145899363 10.9985180298208 10.5496848956170 10.7071414815777 10.7766147018075 10.8709515497491 10.2363225174441 10.5407920917854 10.1771030897550 0.103997776086901 0.103944969050878 0.108126375113747 0.108930885616615 0.0984875595813352 0.0992956829759966 0.104718292036718 0.0977360747146634 0.112108846972085 0.0990234722283658 0.099378954078342 0.0973911380730972 0.0994934754440233 0.102209113739183 0.0992880355751401 0.0973911380730972 0.109468113888658 0.105273117911171 0.098185275251451 5 5|0 -|/ 25790268 25791537 25791050 25790075 25792794 - gene protein_coding_gene TRUE TRUE AT5G64460.1|AT5G64460.2|AT5G64460.3|AT5G64460.4|AT5G64460.5|AT5G64460.6|AT5G64460.7 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58280.1); similar to phosphoglycerate mutase-like protein [Glycine max] (GB:AAG38144.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078)|similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT2G17280.2); similar to phosphoglycerate mutase-like protein [Glycine max] (GB:AAG38144.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.468959053713284 -5.80065611426191 0.000312837679757186 0.0154272247343527 7.72717920169352 20.0321826796226 -0.468959053713284 0.0647649785134384 AT5G53200_at 5.39882172731325 5.39790506358975 8.16550294634876 8.56111788110103 7.0015051972698 7.35312837357785 9.20091626897894 9.37207662186589 8.57744539498107 9.02172395455476 8.84577947220871 8.71582683469069 9.0471977844725 8.91951704981525 8.62234543086976 9.89940334335206 9.40382640092567 9.3961122980757 9.0334328288654 0.201548239097313 0.189405004266731 0.171764628004568 0.170856833719785 0.195202568766897 0.177356665863720 0.170053055363951 0.169963588526013 0.175316206382407 0.169969786241070 0.166669498675230 0.170175599844400 0.166669498675230 0.166669498675230 0.172396433966788 0.169025165382530 0.178951321239517 0.172753037323692 0.166669498675230 5 5|0 +|/ 21600158 21601128 21600757.222 21600000 21601371 + gene protein_coding_gene TRUE TRUE AT5G53200.1 TRY (TRIPTYCHON); DNA binding / transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G30420.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.544977596095339 -5.77523161744634 0.000322580289004319 0.0158232617450147 7.70142264838142 16.5482643281398 -0.544977596095339 0.0962667399670444 AT5G24420_at 5.30765012603062 5.85942568342022 3.54372398700752 3.39373843285511 4.95902875701464 4.56426729146585 6.77720240850559 6.47188394154829 2.93211717121276 4.53665911886 4.56891777612208 7.02482210117001 6.51367180669955 6.4124359815153 5.37314141762892 7.49780039271356 5.67414760378859 4.43427060379687 2.79241560653883 0.247891916818402 0.231615724698477 0.235363179136662 0.239819014150213 0.231042847031648 0.231042847031648 0.2354107736032 0.241289431727873 0.263050887694954 0.24572627717896 0.23221363470776 0.239346161742691 0.232891657616415 0.239536636272291 0.233626713982335 0.235804722956064 0.241363238010715 0.235676298027353 0.240089077242435 5 5|0 -|/ 8336992 8337510 8337206.4 8336617 8338011 - gene protein_coding_gene TRUE TRUE AT5G24420.1 glucosamine/galactosamine-6-phosphate isomerase-related similar to glucosamine/galactosamine-6-phosphate isomerase family protein [Arabidopsis thaliana] (TAIR:AT3G49360.1); similar to putative 6-phosphogluconolactonase [Brassica carinata] (GB:AAK50346.1); contains InterPro domain 6-phosphogluconolactonase; (InterPro:IPR005900); contains InterPro domain Glucosamine/galactosamine-6-phosphate isomerase; (InterPro:IPR006148) -0.64860858639315 -5.7709054467403 0.000324270789286505 0.0158310175182282 7.69702916016449 9.78851420813092 -0.64860858639315 0.131340157537174 AT5G13630_at 13.1053241155660 13.1111191301144 13.2762736041176 13.1786634315296 13.0384401787948 13.0884881650969 13.8220006353173 13.8123986414845 14.1428014836294 14.1666778325440 14.5674176592871 14.5690208342378 14.2131653372032 14.3374063897948 14.5525394827834 14.2912433633130 14.1439223756906 14.6095631984151 14.0472936207965 0.0528931466321751 0.0519203897379172 0.051594727583182 0.051594727583182 0.051594727583182 0.0534965827688396 0.0531026883404124 0.051594727583182 0.0678305685175097 0.0525206479112262 0.0534321277297376 0.0527842463039627 0.0563425925977402 0.0547350515655574 0.0548804174874255 0.0528422743322454 0.0535749036659931 0.0570978099205198 0.0533518242190887 5 5 - 4387644 4388182 4387904 4387337 4392230 - gene protein_coding_gene TRUE TRUE AT5G13630.1|AT5G13630.2 GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CAA51664.1); similar to magnesium chelatase subunit [Glycine max] (GB:CAA04526.1); contains InterPro domain CobN/magnesium chelatase; (InterPro:IPR003672); contains InterPro domain Magnesium-chelatase, subunit H; (InterPro:IPR011771) -0.39691402981466 -5.76052884222689 0.000328365094851486 0.0159289865120274 7.68647825029348 27.5688180589596 -0.39691402981466 0.0190818387461336 AT5G47830_at 6.10189941576126 6.09925107909845 6.56639100790254 6.77467349091812 7.24441950030155 6.99823194288129 6.05363877412071 6.24792704375454 6.82770167193598 6.33992032069543 6.94927392514827 6.80461790990654 6.94165324302734 7.06977176142819 7.16843484726018 6.82225833550826 6.58913788881233 7.03834614192987 6.43910567788236 0.186469270463073 0.182806940681571 0.194266142296509 0.174083324270732 0.185474298930471 0.196833243278566 0.181864006130958 0.184990219470358 0.178027004007016 0.170271295901694 0.173799974148649 0.174235117494346 0.175373457063347 0.17490192709088 0.169124262907655 0.174245289896072 0.182628180449518 0.174728561012150 0.170624441806628 5 5 - 19390280 19391505 19390878.111 19390124 19391557 - gene protein_coding_gene TRUE TRUE AT5G47830.1|AT5G47830.2 similar to hypothetical protein MtrDRAFT_AC150207g26v1 [Medicago truncatula] (GB:ABD32636.1) -0.466503526912495 -5.75991069946632 0.000328610769715137 0.0159289865120274 7.68584915171291 13.2400603552417 -0.466503526912495 0.0651533805920297 AT5G10910_at 4.70884386522544 5.33761991287833 5.6688068615487 5.51162925773526 5.0447970190941 5.40621852678463 5.93679768357839 5.48611319232658 5.20848793294203 4.46929712582895 5.00153317336891 5.76770860829176 4.96502971582275 4.68381692568090 5.56927384733518 6.00076015530198 5.59731652097735 4.79537637891953 4.83901666457758 0.223652593605998 0.225926950402082 0.223093633614094 0.224918307473751 0.217052023770068 0.220966385878427 0.221616222086813 0.224752298132158 0.229898583910297 0.221221286870523 0.21695437658688 0.217046824758852 0.221665717094212 0.223598602384512 0.226059113479127 0.223042991155405 0.220143840556128 0.225984359264281 0.222263231245069 5 5 + 3440733 3441433 3441089.455 3439554 3441583 + gene protein_coding_gene TRUE TRUE AT5G10910.1 mraW methylase family protein similar to Os02g0137600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045831.1); similar to Putative SAM dependent methyltransferases (ISS) [Ostreococcus tauri] (GB:CAL55102.1); contains InterPro domain Bacterial methyltransferase; (InterPro:IPR002903) -0.705869697449627 -5.7407882565488 0.000336310738096436 0.0162223173127898 7.66635596359283 10.455871201644 -0.705869697449627 0.150249536729435 AT5G49160_at 4.30809688607923 4.67849658085977 4.30621559478093 4.5168697597128 3.82605935130269 3.68453286219152 4.72202321526165 5.2708205191119 4.90706321329261 4.63768331115203 6.42296294052634 7.2416326507378 5.26488576494849 6.20477004243552 6.91596304113704 6.47806560942168 5.24420338103579 5.7510677409931 5.19892279053584 0.225516122701328 0.217624415916095 0.220837972976140 0.234987530845898 0.227744934421794 0.219571088191 0.217819136660032 0.223324229597655 0.228275360469355 0.222803299527641 0.22445379411259 0.221099618754373 0.23382509537439 0.226111778842916 0.226274638691296 0.225171465870913 0.233986516601895 0.220340333812458 0.226558741488311 5 5 + 19954621 19955371 19954924 19949456 19955595 + gene protein_coding_gene TRUE TRUE AT5G49160.1 MET1 (DECREASED METHYLATION 2DNA) encodes a cytosine methyltransferase. Identical to DNA (cytosine-5)-methyltransferase AthI (EC 2.1.1.37) (DNA methyltransferase AthI) (DNA Metase AthI) (M.AthI) (ATHIM) [Arabidopsis Thaliana] (GB:P34881); similar to DNA (cytosine-5-)-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G08990.1); similar to MET2 (DNA methyltransferase 2), DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana] (TAIR:AT4G14140.1); similar to MEE57 (maternal effect embryo arrest 57), DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana] (TAIR:AT4G13610.1); similar to DNA methyltransferase 1a [Brassica rapa] (GB:BAF34635.1); similar to DNA methyltransferase 1b [Brassica rapa] (GB:BAF34636.1); similar to DNA cytosine-5-methyltransferase [Prunus persica] (GB:AAM96952.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.618040535391371 -5.73634504193023 0.000338127912991846 0.0162223173127898 7.6618177690321 9.9666395135282 -0.618040535391371 0.122707757472787 AT5G42240_at 7.2470700440602 7.36268992990863 7.68488143537066 7.53516447850494 8.34678551018984 8.03380341206798 7.80248571150608 7.45426616732446 7.20843606158767 7.31009988029825 7.66191768638754 8.22761168564374 7.9621314556487 7.69735479585831 7.56237455500318 8.10231244575463 8.05319686277102 7.2870361768086 7.5556518907481 0.188707478748425 0.170777218670108 0.191050757366125 0.201644500113119 0.182755391363406 0.191437071950542 0.187048504122473 0.183314772496363 0.194572309759390 0.186424456077385 0.180207256071561 0.184696762552644 0.176443336689206 0.177541831036956 0.183404194742233 0.173461388779024 0.200473013702339 0.184566053751315 0.177290675913955 5 5|0 +|/ 16907228 16908124 16907734.556 16905454 16908420 + gene protein_coding_gene TRUE TRUE AT5G42240.1 SCPL42 (serine carboxypeptidase-like 42); serine carboxypeptidase similar to SCPL43, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G12480.1); similar to SCPL41 (serine carboxypeptidase-like 41), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G42230.1); similar to SCPL44 (serine carboxypeptidase-like 44), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G43780.1); similar to Os11g0213600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067496.1); similar to Serine carboxypeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93967.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.517529173196477 -5.73501813797403 0.00033867266161702 0.0162223173127898 7.66046185401297 15.2720456205478 -0.517529173196477 0.0873879394556202 AT5G61030_at 5.23026456980973 4.93916445726784 5.99676167679623 6.01486951914259 5.10837893160119 5.19521541484938 4.91633924614173 5.10964077093932 4.51591936909582 4.90944049845598 4.90906221046671 5.13384576965102 5.36092188301685 5.04397751985745 5.59902063889359 5.05735087374088 5.73275917364664 5.00792315139501 4.92037088148521 0.164834457490633 0.164834457490633 0.164834457490633 0.172027233263584 0.164834457490633 0.166394334318673 0.168371721097875 0.167281373550834 0.179044638325099 0.167422773994537 0.175449941475295 0.176899256160638 0.171185183157766 0.164834457490633 0.168037984051909 0.166902148539352 0.178128403893842 0.169572731644021 0.164834457490633 5 5 + 24578883 24579251 24579079.818 24577677 24579532 + gene protein_coding_gene TRUE TRUE AT5G61030.1 GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); similar to RNA-binding protein precursor [Solanum tuberosum] (GB:AAL07519.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.458316609112446 -5.73119410989504 0.000340247944337561 0.0162223173127898 7.65655255428852 10.3200882744498 -0.458316609112446 0.0623893201991399 AT5G48730_at 5.36406056577261 5.82266960249072 5.76162200826294 5.91789561970744 5.63442298280563 5.61686484459488 5.64139723053116 5.64191354828289 4.87208125942598 5.51595952627927 5.935126135609 6.33040178191099 5.79847854094161 6.29855807259276 6.28172807871356 6.13304702284879 6.15300991042288 5.49362400576563 5.17859904192503 0.204888534399694 0.194213909929941 0.214115158586487 0.196138950606537 0.203143208189049 0.210579629989521 0.19778865327488 0.19470960184436 0.207458977533125 0.200808076043089 0.194213909929941 0.196392503916914 0.202482743007551 0.199191529032053 0.204866139617683 0.198728914456086 0.208912464135587 0.202462564964082 0.199285513404825 5 5 + 19781799 19782308 19782030.909 19780378 19782498 + gene protein_coding_gene TRUE TRUE AT5G48730.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53170.1); similar to Os03g0115300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048751.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17033.1); similar to Os06g0172000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056939.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.508237193969615 -5.73104854814049 0.000340308065216259 0.0162223173127898 7.65640369783873 11.2960441183781 -0.508237193969615 0.0839006856075633 AT5G22440_at 7.68080923280906 7.90052067789632 7.5561246351325 7.53710127062635 8.3759635171118 7.74942490154348 8.09838836149363 8.24621886930316 6.7855236225772 6.91747776806032 7.97549216375974 8.23731344831294 7.66577298246693 7.68925676569203 8.64942477556328 7.31195136926392 7.70902463964441 7.24194467964705 7.01309808670784 0.19202775811138 0.177379781853072 0.192535583653417 0.185851856991006 0.181044215411753 0.189567381432917 0.177238014858018 0.181362581337231 0.217210878466473 0.190505327812753 0.186769341044027 0.184542959349592 0.182775612515094 0.192837877382549 0.182779642401768 0.180550693272266 0.189162359210365 0.183793572586787 0.189331590209348 5 5|0 -|/ 7435337 7436156 7435811 7435079 7436689 - gene protein_coding_gene TRUE TRUE AT5G22440.1|AT5G22440.2 60S ribosomal protein L10A (RPL10aC) Identical to 60S ribosomal protein L10a-3 (RPL10AC) [Arabidopsis Thaliana] (GB:P59231;GB:P53029;GB:Q9FMQ7); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar to putative 60S ribosomal protein L10A (RPL10aC) [Oryza sativa (japonica cultivar-group)] (GB:BAD09090.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.602283410809607 -5.72890347136904 0.000341195383861329 0.0162223173127898 7.65420965335149 15.2507634809857 -0.602283410809607 0.117758517565864 AT5G28770_at 7.65252525434144 7.74512805380119 8.21361004073283 8.47340666484381 9.20737002146551 8.89320939464285 8.59405383900091 8.69000715595142 8.68055474321953 8.62319252514809 9.16100256668413 8.84606093686595 9.0232493439588 8.77050774376607 8.27678805873614 9.5589739728874 9.12068112308436 8.62193898467512 9.00020891480818 0.148504541225770 0.142686030076450 0.154270497382294 0.144784772886865 0.143099146122613 0.145144522709382 0.137000463029613 0.146907950356573 0.159978251437941 0.142165907307548 0.145096992924948 0.145704328181843 0.149787894704269 0.158532158851708 0.154993254097137 0.139949583341658 0.144439188682122 0.147541350917483 0.137000463029613 5 0|5 /|- 10796778 10797402 10796962.556 10796463 10798226 - gene protein_coding_gene TRUE TRUE AT5G28770.1|AT5G28770.2|AT5G28770.3 BZO2H3 (basic leucine zipper O2 homolog 3); DNA binding / transcription factor bZIP protein BZO2H3 mRNA, partial cds similar to BZO2H4 (basic leucine zipper O2 homolog 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54620.1); similar to Light-inducible protein CPRF-2 (GB:Q99090); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to BZO2H4 (basic leucine zipper O2 homolog 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54620.1); similar to Light-inducible protein CPRF-2 (GB:Q99090); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.482742805939921 -5.70898749258868 0.000349555234068149 0.0165083791311597 7.63380186743547 17.2788566709596 -0.482742805939921 0.0742268356601997 AT5G67510_at 8.35112420988752 8.37673758676229 8.82817833595343 8.75051359285089 8.4657965863193 8.2464502577839 7.93236342741066 8.2048301370662 8.05335061663937 7.47405663925769 8.35892643947317 8.79297970232077 8.15944717768814 8.23787799044293 8.88764774028031 8.09600938073515 8.09059118659562 8.22122342997184 8.0844151141245 0.107871500088835 0.111861528786884 0.113961840712022 0.113144101502378 0.109091141692510 0.105867573294548 0.113943887084718 0.112172161639563 0.110818649600830 0.119221401166738 0.111173552319716 0.110921691403924 0.110961411615976 0.111208771777657 0.107951225646074 0.108982448363407 0.119692282207809 0.111506719441322 0.111329125790151 5 5 - 26955256 26955611 26955434.909 26955039 26955677 - gene protein_coding_gene TRUE TRUE AT5G67510.1 60S ribosomal protein L26 (RPL26B) Identical to 60S ribosomal protein L26-2 (RPL26B) [Arabidopsis Thaliana] (GB:Q9FJX2); similar to 60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana] (TAIR:AT3G49910.1); similar to Ribosomal protein L24/L26 [Medicago truncatula] (GB:ABE77438.1); contains InterPro domain Ribosomal protein L24/L26; (InterPro:IPR005825); contains InterPro domain Ribosomal protein L26, eukaryotic and archaeal form; (InterPro:IPR005756); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) -0.4557210742315 -5.70456829664205 0.000351440342651483 0.0165288403605052 7.62926443771222 16.5075969355604 -0.4557210742315 0.0621646406216297 AT5G05000_at 7.03763449670425 7.35553359508792 7.17322050804884 7.18173188708646 7.77556654758942 7.40690922434163 7.37594039690175 7.00962191444637 7.29441784832585 7.08275904779249 7.93357502966615 8.17228740490999 7.59253557884373 7.99889660952134 8.09312182872814 7.95367420727588 7.67422093575301 7.67890023625167 7.27672850568579 0.135994095331148 0.134424055505522 0.133993384154301 0.139659780058627 0.134239684703011 0.13381516521178 0.138667931472074 0.136330628906424 0.144423242073954 0.134819887740052 0.136329495977456 0.136581593088278 0.134092546161891 0.133638951847352 0.132814153502908 0.135952924469497 0.142431644228927 0.142605683805025 0.140387791997134 5 5|0 -|/ 1474276 1475089 1474722 1474114 1476410 - gene protein_coding_gene TRUE TRUE AT5G05000.1|AT5G05000.2|AT5G05000.3 ATTOC34/OEP34 (Translocase of chloroplast 34) Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast. Identical to Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa chloroplast outer envelope protein) (GTP-binding protein OEP34) (AtToc34) (TOC34) [Arabidopsis Thaliana] (GB:Q38906;GB:Q8L9G5;GB:Q9FF74;GB:Q9GDD2); similar to TOC33 (PLASTID PROTEIN IMPORT 1), GTP binding [Arabidopsis thaliana] (TAIR:AT1G02280.1); similar to AAA ATPase; Chloroplast protein import component Toc34 [Medicago truncatula] (GB:ABD28666.1); contains InterPro domain AIG1; (InterPro:IPR006703); contains InterPro domain Chloroplast protein import component Toc34; (InterPro:IPR005688) -0.562629378395589 -5.69253348381799 0.000356630504538457 0.016734648161062 7.61689084968394 14.8420797943442 -0.562629378395589 0.105439826939564 AT5G64140_at 8.79955587062548 8.97612651746903 9.05849573301414 8.92494143478735 9.06387334933683 8.98956628763469 8.84176780172048 9.01787053126872 8.08725029386711 8.62374668951375 9.29818349107306 9.4983975859387 8.7496332807972 9.08866444842353 9.6706597881081 8.90809217106602 8.71240572341759 8.82864951017989 8.71849290680384 0.113988313152513 0.116679001009678 0.115924267636821 0.116185444122671 0.116867991581953 0.115284555592804 0.111324230017295 0.127180982494408 0.126793471106316 0.112178569414164 0.119127088877076 0.116133391290623 0.115345184996583 0.116221550688412 0.117362276797047 0.109050907944908 0.119104727291502 0.115372489203332 0.120908837457695 5 5 - 25684775 25684922 25684844 25684550 25685518 - gene protein_coding_gene TRUE TRUE AT5G64140.1 RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome Encodes a putative ribosomal protein S28. Identical to 40S ribosomal protein S28-2 (RPS28C) [Arabidopsis Thaliana] (GB:P34789); similar to 40S ribosomal protein S28 (RPS28A) [Arabidopsis thaliana] (TAIR:AT3G10090.1); similar to 40S ribosomal protein S28 (RPS28B) [Arabidopsis thaliana] (TAIR:AT5G03850.1); similar to ribosomal protein small subunit 28 [Helianthus annuus] (GB:AAM78552.1); similar to ribosomal protein S28 [Prunus persica] (GB:CAA10101.1); similar to ribosomal protein S28 [Prunus persica] (GB:CAA10104.1); contains InterPro domain Ribosomal protein S28e; (InterPro:IPR000289) -0.432385690053881 -5.69037968416515 0.000357568144733591 0.0167404261497556 7.61467382879028 17.7444408807006 -0.432385690053881 0.0506159464322074 AT5G42480_at 7.73699359301711 7.8807794887865 7.97943350443216 8.1164377824153 8.45518480350687 8.13452038119454 8.20374031432809 8.08799403399904 8.00880244186837 8.00442598637072 8.72632673909863 8.72322338869582 8.44662233952107 8.65558412541912 8.57558308335856 8.7965747272471 8.70901486156047 8.28794934121743 7.88095196533603 0.144903516576847 0.137641879238419 0.150181771154751 0.144733819898427 0.139231184828481 0.143899898350400 0.136018608780665 0.139354942857256 0.157025508502678 0.140885108777759 0.135208173748576 0.135375063150196 0.135208173748576 0.144645873345196 0.144320329194892 0.136369305650249 0.145325928994249 0.154763798910952 0.138510626171266 5 5|0 +|/ 17004620 17005531 17005121 17002410 17005668 + gene protein_coding_gene TRUE TRUE AT5G42480.1 ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6) Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts. Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast. similar to cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G19180.1); similar to Os02g0122400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045726.1); similar to TPA: TPA_exp: plastid division protein precursor [Oryza sativa (indica cultivar-group)] (GB:DAA01472.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.465628919114206 -5.66564943509229 0.000368529038937854 0.0171364813914040 7.58916118058491 16.3643037995215 -0.465628919114206 0.0682782190456239 AT5G53550_at 8.67599086401419 9.00373675081183 8.83611984872837 8.88558640463356 9.07994109096127 8.42427954153802 7.6958713942715 7.33129685786102 8.31870072758171 8.06236524066252 7.91259250869196 7.8501376803591 7.61020988819249 7.71707613260556 6.35410455804275 8.60308998604472 8.10459721620688 7.78537555870047 7.40437863181172 0.185529279647916 0.176799789549395 0.178117370014555 0.180625110803094 0.184248578136909 0.183549242142162 0.176916619694158 0.172857057759473 0.19493193275827 0.188984295452352 0.172305923660475 0.168170636052587 0.171954002632055 0.179760073124087 0.202254535977088 0.176298233030527 0.179308621696638 0.184170383133003 0.177854176544001 5 5 + 21775405 21775955 21775660.727 21773264 21776143 + gene protein_coding_gene TRUE TRUE AT5G53550.1 YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G24120.1); similar to YSL7 (YELLOW STRIPE LIKE 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G65730.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABD04075.1); similar to OPT oligopeptide transporter protein [Medicago truncatula] (GB:ABE88405.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABB76763.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.669122435160693 -5.6583816243094 0.000371819513772764 0.0171729290673506 7.58164365463876 16.3269175813312 -0.669122435160693 0.141933414133309 AT5G04240_at 6.58986886885928 6.77010417493017 7.21968746406792 7.27250821743047 7.49059545264648 7.22555919766182 7.18293510070728 6.63259571546462 6.4918487998723 7.08055805664238 7.24823204265515 7.46095630264931 7.54225558265632 7.10455241116033 6.87697237257434 7.67825278083442 6.99903031008422 7.14627481647155 6.98358153685634 0.137229343789004 0.141837803456138 0.137296791630017 0.137070002367712 0.141544541183201 0.141715285399024 0.134511673452178 0.136722311712349 0.146137298441304 0.141939869418527 0.137390787764888 0.136949128454267 0.137570776348012 0.143135056771260 0.138782572864134 0.145340145570333 0.152792149043645 0.147798297613468 0.136497574208971 5 5 + 1174246 1174602 1174424.091 1169545 1174879 + gene protein_coding_gene TRUE TRUE AT5G04240.1 ELF6 (EARLY FLOWERING 6); transcription factor Encodes a jumonji-class transcription factor that acts as a repressor in the photoperiod pathway. similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE87817.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) -0.572962106816317 -5.64877367468401 0.000376218728437732 0.0173371521671124 7.57169177314932 14.1025127532257 -0.572962106816317 0.110591605233476 AT5G19850_at 7.30633357758774 7.0265374762501 8.36755980130323 8.19130361836978 7.86334458246411 7.66187050895375 9.01395357097567 8.67373742401459 7.8969749008043 7.89133370029408 8.47755963030432 8.18865409267383 8.42828133282012 8.64550575294914 8.38200514606496 8.6917861280411 8.61917660491499 8.41717339460313 7.32948223847 0.130682149945656 0.135541067365572 0.133436670503615 0.129226169542170 0.131730954333924 0.134335492987998 0.134506884899201 0.135887102379436 0.12984562718585 0.133533136226001 0.124817002927713 0.122656726443733 0.130626799279099 0.131872688520079 0.127433602518975 0.131694325468935 0.129914443217316 0.124094933316381 0.133217630307426 5 5|0 -|/ 6710005 6710823 6710405.125 6709736 6711675 - gene protein_coding_gene TRUE TRUE AT5G19850.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G38520.1); similar to Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) (ISS) [Ostreococcus tauri] (GB:CAL57930.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.512928130252903 -5.63255385554818 0.000383774618361691 0.0175281444321408 7.55485561372018 16.1066790900662 -0.512928130252903 0.0892014002672779 AT5G17630_at 6.28774634395963 6.4394332621633 6.5902452596876 6.5434154715948 6.58844426319701 6.85669583124901 6.97023673757885 7.91865192815631 7.48802777123391 7.07515787244667 8.0428587935021 8.45389241546183 7.93108391599017 7.9982796265904 7.97814553097372 8.09135411366406 7.63733318178827 7.7452040099897 7.09805975690233 0.185531869794312 0.196521907198183 0.190695242557393 0.184723374283398 0.188804311429544 0.197181665407531 0.181153268333633 0.180376267086942 0.198208669212767 0.193512609937015 0.177611112410868 0.182192725767594 0.178092586326232 0.183999062111712 0.186313316716428 0.176037992507928 0.194638687005782 0.175434243621282 0.175434243621282 5 5 + 5810143 5810654 5810460.818 5809336 5810964 + gene protein_coding_gene TRUE TRUE AT5G17630.1 glucose-6-phosphate/phosphate translocator, putative similar to GPT1 (glucose-6-phosphate transporter 1), antiporter/ glucose-6-phosphate transporter [Arabidopsis thaliana] (TAIR:AT5G54800.1); similar to Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter (ISS) [Ostreococcus tauri] (GB:CAL52819.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.765946472198282 -5.62918170540806 0.000385366187101301 0.0175428325733681 7.55134968462088 14.3769506782096 -0.765946472198282 0.172764747157601 AT5G66470_at 6.84002559796821 6.57118080384217 6.7897363419533 6.75966417446684 7.1700014869492 6.8313206854053 6.74572501772272 6.6372243844763 6.08403420797238 7.20505029371932 7.52360805435158 8.03024166520453 7.6664871318905 7.42085248951564 8.24365410195267 7.66385418070723 7.63223430365848 7.26182275834072 7.02096591730245 0.132958285052781 0.129660242386637 0.135447784443269 0.139794725362411 0.133076559459738 0.134615506108132 0.136345359575271 0.132953520048013 0.145386026288904 0.129660242386637 0.134623494164094 0.138190995237124 0.130908556766856 0.129660242386637 0.138600450779621 0.131837166954273 0.136659918135098 0.136880045164874 0.133614574401310 5 5|0 -|/ 26559224 26560515 26559809 26558937 26561585 - gene protein_coding_gene TRUE TRUE AT5G66470.1 GTP binding / RNA binding / nucleic acid binding similar to GTP-binding protein (ERG) [Arabidopsis thaliana] (TAIR:AT1G30960.1); similar to hypothetical protein [Thellun (GB:ABB45853.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain KH, type 2; (InterPro:IPR004044); contains InterPro domain GTP-binding protein Era; (InterPro:IPR005662) -0.482312218484779 -5.61837130719421 0.000390517105585554 0.0176841021663106 7.54009731751666 14.0182903826150 -0.482312218484779 0.0773263799578483 AT5G57700_at 4.75259124571941 4.86234978194656 4.56370678128647 4.10185298663925 5.25102083929857 4.72222750364105 5.2452971180454 4.91591759984907 6.34307021341152 6.01368442385862 7.91656077739154 8.31431399364105 7.06729459774464 7.07641453148557 7.94406559496015 6.83951324203279 5.43907389454907 7.02221164845148 6.21795035606669 0.21065697211128 0.211086279822265 0.217833994395338 0.224770066478645 0.216014268488909 0.222115439273953 0.222504554733156 0.219392325251087 0.233102422264302 0.220028353807107 0.214713309809491 0.213503186568483 0.210894301013203 0.221480465907546 0.214038161811413 0.213432671602365 0.217967841669448 0.218002836042765 0.217602966220984 5 0|5 /|+ 23393491 23394062 23393726.5 23392100 23394368 + gene protein_coding_gene TRUE TRUE AT5G57700.1|AT5G57700.2|AT5G57700.3 BNR/Asp-box repeat family protein similar to Sialidase [Medicago truncatula] (GB:ABE86417.1); contains InterPro domain Glycosyl hydrolase, BNR repeat; (InterPro:IPR002860); contains InterPro domain Sialidase; (InterPro:IPR011040) -0.644397693606013 -5.6181341180827 0.000390630958893134 0.0176841021663106 7.53985020720693 11.4988701651254 -0.644397693606013 0.135543801649594 AT5G02870_at 10.2404168557622 10.3604655639623 10.5767149858153 10.6329617214469 10.2137635179786 10.2903220646353 10.4043501174048 10.7106735883565 10.2552554295737 10.2775903673000 10.6084040935592 10.9352428355013 10.4623136815052 10.4400807453113 11.0830210187570 10.4260333360452 10.2881234816328 10.4281991590533 10.0852906863716 0.0732944101249089 0.0732451186194725 0.0755742501850642 0.075806003068048 0.0777911296407514 0.0757818984799847 0.0764739985847233 0.075436736429805 0.0767148146407167 0.0797868495365683 0.0757220182922399 0.0752588932558863 0.0755705832685544 0.0805697358187797 0.0757368842367716 0.0737045937310146 0.0795319468453702 0.0733982370866426 0.0761738340061939 5 5 + 658456 659499 658934.909 657784 659731 + gene protein_coding_gene TRUE TRUE AT5G02870.1 60S ribosomal protein L4/L1 (RPL4D) Identical to 60S ribosomal protein L4-2 (L1) (RPL4D) [Arabidopsis Thaliana] (GB:P49691;GB:Q9LYZ8); similar to 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana] (TAIR:AT3G09630.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71290.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71215.1); similar to 60S ribosomal protein L4 (L1) (GB:Q9XF97); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136); contains InterPro domain Ribosomal protein L4/L1e, archeabacterial like; (InterPro:IPR013000) -0.440680566859630 -5.58882130276001 0.000404983832178118 0.0182935712989455 7.50923713127982 20.8236949460881 -0.440680566859630 0.0592622323127276 AT5G23730_at 5.1924504988859 5.65057165970966 6.32747709028996 6.57027540561134 5.47119157686324 6.35819204983108 6.8997067410825 7.3018374804223 6.2885297538496 6.60616827575882 7.14369026518196 6.97539551332264 7.18548079489998 7.08151184212376 6.43274820772416 7.66689445277274 7.60301205649254 6.95801454642723 6.89988876306646 0.188766146367555 0.17945452306944 0.183461435879993 0.180748004062110 0.182737437376295 0.178088331643068 0.180989419095547 0.189170755634965 0.191959928699121 0.182540050253883 0.178088331643068 0.178088331643068 0.184933390759931 0.18683719424263 0.184015474115454 0.184768059860933 0.178088331643068 0.179123217822940 0.185462807115290 5 5 + 8005803 8006316 8005996.818 8005237 8006633 + gene protein_coding_gene TRUE TRUE AT5G23730.1 nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G52250.1); similar to putative COP1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07933.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.819492127190718 -5.57596769753069 0.000411457891527711 0.0184463261001417 7.49576689746645 13.0859823415502 -0.819492127190718 0.190933884926036 AT5G07860_at 6.57584401594881 6.8609223425495 6.5861141089899 6.39504201015192 6.29221656050431 6.60940687941569 6.03847677001106 5.51230954288981 5.40537518988418 5.49837810435756 6.17256172260204 6.45465222106137 5.71831094782551 6.10699958954029 6.3017272329801 6.56894252645836 6.40820462945618 6.32506574432207 5.87929620509633 0.204900789498048 0.203167978916140 0.203211783782683 0.209144416996679 0.201936333101094 0.205709470606208 0.205183781862547 0.204374702970726 0.213997653932884 0.209815732168997 0.212904196150659 0.202575858779347 0.20024140805166 0.204011354633023 0.219165731007866 0.198536711408750 0.206590661552582 0.203481753057767 0.208503657904419 5 5 + 2512411 2512894 2512598.727 2511443 2513096 + gene protein_coding_gene TRUE TRUE AT5G07860.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G07870.1); similar to N-hydroxycinnamoyl/benzoyltransferase 6 [Glycine max] (GB:ABC47848.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.595314547100281 -5.55067768646257 0.000424527483192926 0.0189267956895229 7.46918075652745 12.2844954837543 -0.595314547100281 0.121784242472778 AT5G13480_at 5.04880825526356 5.28392942714922 5.843048979047 5.868393838091 5.66397866281484 6.03913720191289 5.10296332696869 5.17786560910717 4.9140022608382 5.09289092892234 5.32426443680565 4.9554075756157 5.33903790261165 5.03195473302183 5.20180920138763 5.40568175238136 5.24332014035613 5.30765311068617 4.8564086914231 0.209929334092084 0.205865533543910 0.211084094507848 0.203338137487688 0.206810616109177 0.214063718976908 0.206289041873057 0.213039575003696 0.214292052187179 0.211352041825672 0.20332612681617 0.202042244761194 0.215472101209118 0.202042244761194 0.209055457368497 0.205227695420337 0.210795899654950 0.204781163111493 0.203982469292837 5 5 - 4326957 4327568 4327250.273 4326531 4331702 - gene protein_coding_gene TRUE TRUE AT5G13480.1 FY (FY) Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to FY protein [Lolium perenne] (GB:AAT72461.1); similar to Os01g0951000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045410.1); similar to putative OsFY [Oryza sativa (japonica cultivar-group)] (GB:ABA12455.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.477062802678957 -5.54346102750306 0.000428339397181416 0.019014251700632 7.46157405250045 10.5938031960457 -0.477062802678957 0.0778320172942698 AT5G44650_at 9.8603634834351 9.74486794729469 10.1618498576355 9.90251473517336 10.1867724999497 9.770290867859 10.4552607334846 10.4069596039485 10.4403320226473 10.5517425328500 10.849735561466 11.0582217271748 10.6297311645831 10.9415238423686 10.9668007833238 10.8738871189468 10.5894868201865 10.4852224673906 10.2575670351309 0.100876208245298 0.0905780507244241 0.0888822780259025 0.0920752680882312 0.0877186275671173 0.0899000793845053 0.0926237999767158 0.0906375698738674 0.0929098846451816 0.0921714427935433 0.0905215661819426 0.0885553345720316 0.0895126894213702 0.0907213745864869 0.0880908939149734 0.0877186275671173 0.088776998851892 0.0898649332834267 0.089552920531522 5 5|0 +|/ 18031771 18032495 18032176.3 18030376 18032630 + gene protein_coding_gene TRUE TRUE AT5G44650.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68269.1); similar to Os01g0798500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044524.1) -0.500401213850008 -5.53862644311785 0.000430913918064408 0.0190873109868618 7.45647314960086 20.6690466573756 -0.500401213850008 0.0876251269960548 AT5G04290_at 6.45980705033984 6.05918127787689 6.77424923189985 6.42178785198599 6.76438813884283 6.58663963121279 5.61724812063506 5.27462053338031 6.2995422122716 6.37920878855277 6.4331846189433 6.52448468524749 6.34682092346879 6.77116229552476 6.3619828018843 6.83332023402153 6.40576163859316 6.65149482129765 6.45059545135158 0.165431911278595 0.159482393604959 0.157053844691680 0.162044523779724 0.167378503034105 0.157921456737284 0.174246639863993 0.178327631146161 0.170153278103288 0.163469981837140 0.165153070407704 0.159937543247432 0.157955008396359 0.163725499792626 0.160362343187204 0.155867357515974 0.160943799702928 0.159464881180865 0.167479479614905 5 5 + 1202104 1202613 1202367.636 1196070 1202654 + gene protein_coding_gene TRUE TRUE AT5G04290.1 KOW domain-containing transcription factor family protein similar to KOW domain-containing transcription factor family protein [Arabidopsis thaliana] (TAIR:AT4G08350.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU43935.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain Bacterial NusG ribosomal protein; (InterPro:IPR003257) -0.571047190426652 -5.53543029602282 0.000432625186010922 0.0191219005245916 7.45309872675979 12.703477889404 -0.571047190426652 0.113969107178375 AT5G61970_at 7.8660188945876 8.0413119083523 8.53866551011428 8.23968004687373 8.62930433281947 8.25561326433255 8.03587361396255 8.07552354989774 7.77786952457268 7.0280001115165 8.0582154832224 8.02959506953057 7.8429784350977 7.48891353783051 7.74007855044716 7.69832853215282 7.32987490442722 7.51208338949544 6.91490645508764 0.224075169012394 0.217421551599045 0.229818564161163 0.229075182064955 0.217421551599045 0.235747305232999 0.220704800270747 0.225158618219072 0.233765436680945 0.234168961130584 0.22467665533849 0.220604013250120 0.218097173284432 0.230815523588900 0.222960131992943 0.220864517456353 0.236018860985607 0.221591801733905 0.219247927057878 5 5|0 +|/ 24908970 24910277 24909789.6 24905843 24910554 + gene protein_coding_gene TRUE TRUE AT5G61970.1 signal recognition particle-related / SRP-related similar to PREDICTED: similar to signal recognition particle 68kDa isoform 1 [Bos taurus] (GB:XP_582620.2); similar to Os08g0323000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061540.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.498165544991154 -5.49063536920099 0.000457404046971987 0.0200260995085642 7.40561961034912 15.6866324825347 -0.498165544991154 0.0884675143398055 AT5G54280_at 5.01350920011258 4.67456990968059 4.83405112868751 5.00316038303502 5.53713807298991 5.48391683760237 5.20617884418641 5.04219575185959 4.64823801418363 5.35613720659405 6.30193089945766 6.79201838161008 6.3418709577306 5.884548418641 5.9144566204809 6.19629764874555 5.97638586542294 6.02589584366653 6.11500598106185 0.242481572826557 0.237582914847410 0.24285605683624 0.233805672699200 0.229999849526804 0.230126226970399 0.233544607134236 0.231673777295827 0.236075397610153 0.229999849526804 0.234695487973464 0.230609079873159 0.233970115628684 0.235117730443256 0.239023114786832 0.229999849526804 0.232191778427606 0.236624285374754 0.235732832534959 5 0|5 /|- 22056983 22057283 22057159.8 22056609 22063524 - gene protein_coding_gene TRUE TRUE AT5G54280.1|AT5G54280.2 ATM2 (ARABIDOPSIS THALIANA MYOSIN 4) Type VII myosin gene similar to ATATM (myosin 1), motor [Arabidopsis thaliana] (TAIR:AT3G19960.1); similar to VIIIB (Myosin-like protein VIIB), motor [Arabidopsis thaliana] (TAIR:AT4G27370.1); similar to VIIIA (Myosin-like protein VIIA), motor [Arabidopsis thaliana] (TAIR:AT1G50360.1); similar to myosin VIII ZMM3 [Zea mays] (GB:AAD31926.1); similar to IQ calmodulin-binding re (GB:ABE84244.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048)|similar to ATATM (myosin 1), motor [Arabidopsis thaliana] (TAIR:AT3G19960.1); similar to VIIIB (Myosin-like protein VIIB), motor [Arabidopsis thaliana] (TAIR:AT4G27370.1); similar to VIIIA (Myosin-like protein VIIA), motor [Arabidopsis thaliana] (TAIR:AT1G50360.1); similar to myosin subfamily VIII heavy chain [Petroselinum crispum] (GB:AAG49341.1); similar to IQ calmodulin-binding re (GB:ABE84244.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.459315678172591 -5.49007622620323 0.000457722944644429 0.0200260995085642 7.40502476980114 10.8754913393939 -0.459315678172591 0.0720208389105228 AT5G62190_at 9.5704276226169 9.6271267893513 9.83265556003834 9.73575876175375 10.1383800663826 10.0869498053665 9.04864775001205 9.19587110914796 9.02201558161232 8.95183976201667 9.02090500269452 9.1476592783866 9.34623412970895 9.03646975778925 9.1402339569893 9.02359556085543 9.40524409695057 9.05419140026411 9.19862771784143 0.110184998520587 0.106264157792804 0.105892085486828 0.115276416588649 0.109535789719287 0.110794149166663 0.108491390066838 0.108874963956176 0.130123638649870 0.116170565712327 0.112782598675748 0.107603615847105 0.110372240471943 0.112816442163826 0.108054930905625 0.109790165771397 0.112932459758616 0.114198211607569 0.113146581881237 5 5|0 -|/ 24997815 24998601 24998270.875 24997494 25001199 - gene protein_coding_gene TRUE TRUE AT5G62190.1 PRH75 (plant RNA helicase 75); ATP-dependent helicase DEAD/DEAH box RNA helicase PRH75 Identical to DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) (RH7) [Arabidopsis Thaliana] (GB:Q39189;GB:Q94BX7;GB:Q9LVB7); similar to EMB1138 (EMBRYO DEFECTIVE 1138), ATP binding / ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G26742.2); similar to RNA helicase [Vigna radiata] (GB:AAF40306.1); similar to DEAD-box ATP-dependent RNA helicase 7 (GB:Q41382); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE79355.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain GUCT; (InterPro:IPR012562); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.390651419474623 -5.47351990088615 0.000467276108348832 0.0202600842363203 7.38738688561544 18.7566326839728 -0.390651419474623 0.0332533325347015 AT5G14440_at 6.77965786734206 6.86453767980044 7.36937283820941 7.31203426600989 7.8901538243588 7.3145855650533 6.86002961961545 7.06079491680702 7.21283689360509 7.04507369937905 7.60937830024085 7.79505677885301 7.39982320888465 7.78867196695531 7.33696724368734 7.52212345020302 7.11807028464139 7.19514394736153 7.0842464406786 0.155548676178011 0.164083761016155 0.159115024712534 0.150241178352099 0.155459329051721 0.168522099590638 0.157400505196136 0.161614232611694 0.153766449802685 0.154040939403388 0.165187424326017 0.159176017908627 0.151164504258198 0.163959479590824 0.159092305019120 0.155850820157788 0.154473911175159 0.149337453061996 0.158385113395783 5 5|0 -|/ 4656073 4657160 4656638.111 4655906 4657910 - gene protein_coding_gene TRUE TRUE AT5G14440.1|AT5G14440.2 similar to surfeit locus protein 2 family protein / SURF2 family protein [Arabidopsis thaliana] (TAIR:AT5G40570.1); similar to hypothetical protein DDBDRAFT_0206414 [Dictyostelium discoideum AX4] (GB:XP_641279.1); similar to OSIGBa0158F13.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66876.1); similar to Os04g0480400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053101.1); contains InterPro domain Surfeit locus 2; (InterPro:IPR008833)|similar to surfeit locus protein 2 family protein / SURF2 family protein [Arabidopsis thaliana] (TAIR:AT5G40570.1); similar to hypothetical protein DDBDRAFT_0206414 [Dictyostelium discoideum AX4] (GB:XP_641279.1); similar to Os04g0480400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053101.1); similar to OSJNBa0044K18.33 [Oryza sativa (japonica cultivar-group)] (GB:CAE05892.1); contains InterPro domain Surfeit locus 2; (InterPro:IPR008833) -0.545141549299797 -5.47326349334607 0.000467425754053056 0.0202600842363203 7.38711335434768 14.4737491932284 -0.545141549299797 0.106969316706117 AT5G50310_at 5.80815841928939 6.10323733596304 5.95049537760859 6.43183673721618 6.81719331188441 6.55042953017605 6.0619173765484 6.03466384662077 5.44351076581063 5.87160124502457 6.2295388210133 6.66904117946523 6.15155998903193 6.06799315466009 6.62935911683323 6.18180347186443 6.4456790578589 5.92498917189759 5.92016982982322 0.1676078604801 0.168300454934296 0.170933327418610 0.164515455409844 0.163360891761887 0.166366332860742 0.169953697142822 0.174153185925992 0.175697658196041 0.166648602219318 0.171201843288559 0.163066481280767 0.170950859172361 0.170367644095956 0.170010830269423 0.163066481280767 0.163703306620646 0.171598645365026 0.165238492366899 5 5|0 +|/ 20495427 20496279 20495929.714 20491713 20496681 + gene protein_coding_gene TRUE TRUE AT5G50310.1 kelch repeat-containing protein similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G07720.1); similar to Os04g0483600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053126.1); similar to H0805A05.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67474.1); similar to OSJNBa0081L15.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE03144.2); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.548293030963338 -5.47188071225391 0.000468233678545294 0.0202600842363203 7.38563803008196 12.2360362130205 -0.548293030963338 0.108164943598392 AT5G11630_at 6.68481080716807 6.89126651715473 6.80275938374433 7.320566335516 6.79877421013212 6.82159594712355 6.52533646312144 7.02729425980458 5.13065000055405 4.31672600017724 5.13780399836934 5.74140897885098 5.25162678834144 5.36012731989241 5.74545144437823 5.64755443814438 5.91090316596462 5.06197578931338 4.94565382438333 0.196519396551174 0.199581205421722 0.195031523154712 0.191307224300550 0.193980095176933 0.198870134014621 0.195759335804127 0.192878457566052 0.195918462576752 0.194515492124982 0.191307224300550 0.191307224300550 0.200049171665561 0.197545220003602 0.201893710613385 0.192766304823643 0.192365377623701 0.200224383575092 0.191307224300550 5 5|0 +|/ 3740548 3740877 3740718.222 3740461 3742140 + gene protein_coding_gene TRUE TRUE AT5G11630.1|AT5G11630.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17310.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78369.1)|similar to transcription factor [Arabidopsis thaliana] (TAIR:AT4G17310.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78369.1) -0.61029043559429 -5.46878907610111 0.00047004554773588 0.0202957544145048 7.38233828515337 11.9989420398598 -0.61029043559429 0.129875243617672 AT5G59850_at 9.4847565832881 9.64446880978134 9.69129336321719 9.94539847859531 9.57431092909412 9.39521081213048 9.94235856482837 10.1047326836999 8.95295283285787 8.80773584922095 9.50538844210961 10.1139025435198 9.38860779646643 9.38803869289552 9.99046319225524 9.24041279495357 9.23642569170133 9.20304284148953 8.66705469876507 0.122568552630715 0.122905499142962 0.124825834618198 0.120251563940678 0.12190591256235 0.119237100194027 0.128007645364798 0.122265862911814 0.128203733070476 0.125009254329907 0.125635032019149 0.118610390849793 0.120844661547260 0.123334714179208 0.127202072358367 0.1190237328382 0.129482364091553 0.122817808161608 0.126333444203109 5 5 - 24129733 24130276 24129990 24129426 24130843 - gene protein_coding_gene TRUE TRUE AT5G59850.1 40S ribosomal protein S15A (RPS15aF) Identical to 40S ribosomal protein S15a-1 (RPS15AF) [Arabidopsis Thaliana] (GB:P42798;GB:Q7GD83); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.2); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) -0.444240107169149 -5.44584068845844 0.000483735509387726 0.0207994705660521 7.35779329050682 18.8815827995986 -0.444240107169149 0.066692225509649 AT5G51970_at 10.0230636535320 9.8468375411014 10.5554136287866 10.5418489383302 10.8214630164808 10.5456920201507 10.1167639079382 10.0184396210460 10.2319774301840 10.4791541114421 10.0875999472542 9.78665195354823 10.112995939803 10.2570331128548 9.92678331782311 10.4107491694821 10.3487417102327 10.3475088018015 10.3398146840019 0.08573305015401 0.0820406612666123 0.0822713845399335 0.0836162973896627 0.083284573940762 0.086961015788474 0.0812730518578703 0.085311856256946 0.0892143266612353 0.0795255232275961 0.0836389713688763 0.0803136497776955 0.083846705725772 0.081389093272916 0.0830466884975673 0.082905915172891 0.087473352938888 0.0873994758085793 0.0807673786874104 5 5|0 +|/ 21129798 21130412 21130117.7 21128671 21130629 + gene protein_coding_gene TRUE TRUE AT5G51970.1|AT5G51970.2 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G63620.1); similar to sorbitol related enzyme [Solanum lycopersicum] (GB:BAE47038.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain GroES-related; (InterPro:IPR011597); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.428476729558754 -5.43596727913021 0.000489758507164969 0.0209707015517601 7.34720479143904 20.5637269922421 -0.428476729558754 0.0591829116578214 AT5G64930_at 7.8306773988454 8.06949520729127 8.73428705542902 8.79561208993628 8.97759089340033 8.92004864370038 8.22895201294352 8.60169374042593 8.70420070944803 8.55137211508797 8.81774553569963 8.62246912843415 8.74991125964032 8.78771116590744 8.36899308054938 9.12541241290858 8.30737024441638 8.5031575202457 8.56436413663189 0.168641305400875 0.151968267566354 0.153440562864249 0.153161241896274 0.159403965469314 0.160219892894289 0.165025969418984 0.153771012202711 0.177359591732537 0.163665165642525 0.151968267566354 0.153347131365755 0.157318392399074 0.168832871634926 0.164282561320842 0.151968267566354 0.172569269118414 0.162146853525600 0.160530388946573 5 5 - 25963136 25963655 25963356.636 25962938 25965567 - gene protein_coding_gene TRUE TRUE AT5G64930.1 CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR). Identical to Protein CPR-5 (Protein constitutive expression of pathogenesis-related genes 5) (Protein constitutive expression of PR genes 5) (Protein hypersenescence-1) (CPR5) [Arabidopsis Thaliana] (GB:Q9LV85;GB:Q8W3U8); similar to HYS1-related [Medicago truncatula] (GB:ABE89402.1) -0.467638270434509 -5.43003511543137 0.000493416464054877 0.0209889638025257 7.34083482962754 17.1532906038454 -0.467638270434509 0.0779787870300781 AT5G13280_at 6.11403734547455 6.07726570143882 6.15912191797318 6.21886871326804 6.52230297890006 6.58773208607177 5.94750634747357 6.32719833335294 5.7023550575601 6.2748473333849 7.08411002272567 7.82032189785597 6.81906398141799 6.8818970693485 7.44686918362043 6.68599878000207 6.47692129638174 6.9024466903686 6.22922003969284 0.203413582341175 0.205673824087685 0.206728171287351 0.205061088144061 0.208948927829646 0.225856040405695 0.211289702024059 0.205894258135598 0.23742596772207 0.203701117496632 0.207579686754370 0.205727919668698 0.205323916752561 0.220595451849667 0.205218992315428 0.205339080126182 0.225634695110600 0.219065584605972 0.202374604179868 5 5|0 +|/ 4251590 4252617 4252212.2 4249441 4252839 + gene protein_coding_gene TRUE TRUE AT5G13280.1 AK-LYS1 (ASPARTATE KINASE 1) Asp kinase inhibited by Lys and S-adenosylmethionine. Contains regulatory domains that belong to the ACT domain family, which allow binding to a extreme variety of ligands. Can function as a monomer or as a dimer with acetohydroxyacid synthase (HSDH). Identical to Aspartokinase 1, chloroplast precursor (EC 2.7.2.4) (Aspartate kinase 1) (AK1) [Arabidopsis Thaliana] (GB:Q9LYU8;GB:O23152); similar to CARAB-AK-LYS (Lysine-sensitive aspartate kinase), amino acid binding / aspartate kinase [Arabidopsis thaliana] (TAIR:AT5G14060.2); similar to aspartate kinase, lysine-sensitive, putative [Arabidopsis thaliana] (TAIR:AT3G02020.1); similar to putative aspartate kinase [Oryza sativa (japonica cultivar-group)] (GB:AAO20063.1); similar to putative precursor monofunctional aspartokinase [Oryza sativa (japonica cultivar-group)] (GB:BAC84902.1); similar to precursor monofunctional aspartokinase [Glycine max] (GB:AAD41796.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Aspartate kinase; (InterPro:IPR012150) -0.445181528217781 -5.4297862577291 0.000493570565715236 0.0209889638025257 7.34056747217199 12.7860097240413 -0.445181528217781 0.0677722377390561 AT5G54580_at 7.79363887538363 8.07008655206446 8.40276842450994 8.65161656721796 8.86900952798755 8.2887051847825 8.84095787076874 9.17995864989652 7.83871390992101 8.3832910775185 8.71981047550526 8.52647468529524 8.80240551353815 8.73297607772218 8.4255396248304 8.84759492165043 8.395644501454 8.3169119704698 8.41904785380645 0.131162581587784 0.137854991551220 0.140705097090281 0.138842326256730 0.132646544680883 0.150524423657468 0.140656597030971 0.134286935033701 0.144386506036907 0.135687119204923 0.131162581587784 0.131368174817855 0.131162581587784 0.137068256234798 0.133980743876009 0.135364841874381 0.138794101053974 0.142040372544154 0.134374917373675 5 5|0 +|/ 22188661 22189851 22189446.222 22188442 22190203 + gene protein_coding_gene TRUE TRUE AT5G54580.1 RNA recognition motif (RRM)-containing protein similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G37510.1); similar to Os07g0549800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059935.1); similar to Os08g0139000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060964.1); similar to RNA-binding re (GB:ABE82094.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.614857330370165 -5.42865799071441 0.000494269886478123 0.0209889638025257 7.33935519602398 16.9168947074382 -0.614857330370165 0.132928442659133 AT5G56590_at 4.01634857574515 4.2395624240033 4.43722662320637 4.49787289484716 5.34143310184791 5.29593028797576 5.0053020099658 5.28812343015723 4.19492943913246 4.63839371604699 5.45725158270377 5.78623138654512 5.10308702329363 5.62455150980606 6.02682749142397 5.34621603879532 5.22764892087502 4.45993565014475 5.20084099655221 0.234788216774367 0.227125472123301 0.220797752704924 0.220116643637174 0.219136426657058 0.237000066833931 0.227246629392200 0.229877681291968 0.228140278541885 0.221809338744493 0.220960633316627 0.223006096004782 0.221174842584991 0.218476552670163 0.22479627075176 0.218513119908702 0.244441067594059 0.231583692344658 0.218476552670163 5 5 + 22925952 22926614 22926246.818 22924545 22926785 + gene protein_coding_gene TRUE TRUE AT5G56590.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 13 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 13) ((1->3)-beta-glucanase 13) (Beta-1,3-endoglucanase 13) (Beta-1,3-glucanase 13) [Arabidopsis Thaliana] (GB:Q9FJU9); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G29360.1); similar to Os01g0739700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044198.1); similar to beta-1,3-glucanase [Medicago sativa] (GB:ABD91576.1); similar to beta-1,3-glucanase [Medicago sativa] (GB:ABD91577.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.434719851440888 -5.4032111755009 0.000510332098142398 0.0215511183464908 7.31195473715154 9.79373662731476 -0.434719851440888 0.0637162864742939 AT5G55120_at 5.27893078091359 5.81297192454741 4.96043323399192 4.90342274456122 4.81047019257822 4.58909934450105 5.03782136712643 5.02554788126703 3.66175392350436 5.00560418405791 5.78762325877871 6.10162793914596 5.4271296559657 5.69747447568325 5.61854238298395 6.12538180734973 5.64522636889458 5.45055158242603 4.61711627011822 0.210689480987572 0.214425690087976 0.211936293608418 0.210825584216851 0.206322927048639 0.210415285541611 0.225919191555848 0.218154698789581 0.229660872898634 0.215753833621958 0.210208974244194 0.219469517789834 0.217268201828749 0.212345303957896 0.218455021340675 0.209314734025104 0.219212374788233 0.216265028039902 0.216989274093241 5 0|5 /|+ 22388275 22388890 22388500.4 22386321 22389093 + gene protein_coding_gene TRUE TRUE AT5G55120.1 similar to VTC2 (VITAMIN C DEFECTIVE 2) [Arabidopsis thaliana] (TAIR:AT4G26850.1); similar to unknown [Xerophyta humilis] (GB:AAT45011.1); similar to Os12g0190000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066338.1); contains domain SUBFAMILY NOT NAMED (PTHR20884:SF3); contains domain FAMILY NOT NAMED (PTHR20884) -0.520857597126566 -5.40149253715805 0.000511437201755725 0.0215511183464908 7.31010008243908 10.1322635885844 -0.520857597126566 0.100551435882347 AT5G04220_at 7.95936553697839 8.08078413878804 8.19052038550494 7.55881712835997 8.86434232097004 8.30049788507224 6.91622467425898 6.8695492724179 6.6349266864214 7.26121002651782 6.60884023397396 7.2402861309712 6.75209866863345 7.50694471431835 6.15264113035143 7.13816178946179 6.98273390845839 5.95813088830023 6.72170636565729 0.23084073985693 0.228331327444312 0.236849236263104 0.229718215566684 0.229706529595748 0.243467122891243 0.231923215504706 0.233141473008932 0.245301696420429 0.235322694203454 0.232998408713492 0.227140377218981 0.230322165519971 0.231531729130629 0.228085069208987 0.230768444911798 0.23230680127108 0.228756547122843 0.232463249787143 5 5|0 -|/ 1155995 1156721 1156371.2 1155866 1158878 - gene protein_coding_gene TRUE TRUE AT5G04220.1|AT5G04220.2 C2 domain-containing protein (sytC) similar to C2 domain-containing protein (sytA) [Arabidopsis thaliana] (TAIR:AT2G20990.1); similar to C2 [Medicago truncatula] (GB:ABE85279.1); similar to Os06g0685300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058398.1); similar to Os02g0448400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046755.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973)|similar to C2 domain-containing protein (sytA) [Arabidopsis thaliana] (TAIR:AT2G20990.1); similar to C2 [Medicago truncatula] (GB:ABE85279.1); similar to Os02g0448400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046755.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.656307293193474 -5.38755225410161 0.000520497737717337 0.0216610306356329 7.29503748595273 14.6750596890892 -0.656307293193474 0.14825145941791 AT5G06060_at 9.57447540951673 9.56151348554078 9.9247738841233 9.57641541469063 10.2159684991285 9.73892880642372 10.4003024719738 10.1715696532245 9.81510660864581 10.0605482386551 10.1813530038929 10.3633159694669 10.2796162260005 10.2684073256071 10.0591269564158 10.4731760642331 10.0683665839771 10.1838666723710 9.9006425113711 0.106103417725665 0.100980093409261 0.107881531290652 0.106915870408416 0.104399183040295 0.108032941786942 0.102258337187500 0.103138231038632 0.107271739734945 0.0994886165526883 0.102366381052756 0.101532347356384 0.104801163988715 0.107630250999452 0.100684608401662 0.0997012759111566 0.108831746775455 0.101203150036253 0.100167660127113 5 5 - 1824087 1825222 1824486.182 1823843 1825895 - gene protein_coding_gene TRUE TRUE AT5G06060.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.543844588555789 -5.38734219369669 0.000520635595330805 0.0216610306356329 7.2948102543212 19.9755364796459 -0.543844588555789 0.109641732653854 AT5G57180_at 7.32832519795948 7.43919697836238 7.51503946143295 7.71383022131225 7.8524398859301 7.38619429806835 7.21367852476156 7.49820036779171 6.30039514792894 6.61235257067399 6.90020279081284 7.83908508257421 7.24652130205632 7.09347122282466 7.69736485992939 7.9177038356646 7.22188574038592 6.84049588154515 6.92506963621911 0.191218308345062 0.179052880209910 0.188072534604154 0.180361694937275 0.180959613113075 0.1902262464081 0.181862798883886 0.186913521145295 0.190501405650251 0.189392641939269 0.183067463162689 0.190294851767648 0.181791653070952 0.188141115185495 0.186819720564174 0.180591154203221 0.192013841352422 0.186371124040858 0.187997376529764 5 5|0 +|/ 23186322 23187474 23186593.9 23185068 23188225 + gene protein_coding_gene TRUE TRUE AT5G57180.1|AT5G57180.2|AT5G57180.3 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.2); similar to Os02g0148000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045888.1); similar to putative stress resistance-related protein [Oryza sativa (japonica cultivar-group)] (GB:ABF00989.1); contains InterPro domain CCT; (InterPro:IPR010402)|similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.1); similar to putative stress resistance-related protein [Oryza sativa (japonica cultivar-group)] (GB:ABF00989.1); contains InterPro domain CCT; (InterPro:IPR010402)|similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.2); similar to AT5g57180/MUL3_13 [Medicago truncatula] (GB:ABE84577.1) -0.524171610086853 -5.3853096687972 0.000521971545575416 0.0216727408663378 7.29261118405509 14.4719616791598 -0.524171610086853 0.102402155669687 AT5G66420_at 5.97798125204101 5.99759030251008 5.10078916809139 4.9174796177278 5.96940614972606 5.38438363047516 6.13171118568888 5.9551057553393 5.90811560159239 6.51794575333928 8.2099359057905 8.4583777998241 7.57557589463924 8.09223208322646 8.5637298940435 7.74651797765254 7.2350083919402 7.84084645050658 6.4487716598281 0.213002995349883 0.215389201270772 0.217884193804394 0.217919914651788 0.214848650023995 0.229051754374928 0.213002995349883 0.215545232700207 0.216343529793174 0.213002995349883 0.215321714513286 0.236770630066927 0.222578559412549 0.233562462539236 0.22523197074894 0.213002995349883 0.226827855048432 0.221510444271514 0.215629232923623 5 5|0 -|/ 26539194 26539838 26539596.2 26538900 26542307 - gene protein_coding_gene TRUE TRUE AT5G66420.1|AT5G66420.2 similar to hypothetical protein [Thellun (GB:ABB45848.1); similar to Os06g0472400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057623.1); contains InterPro domain Protein of unknown function UPF0261; (InterPro:IPR010647) -0.545443597513061 -5.38100055665642 0.000524816211610839 0.0217469208551135 7.28794659509817 12.8077504100114 -0.545443597513061 0.110460906074723 AT5G25240_at 4.22249294633899 3.93123355587441 4.93064929935918 5.07723025770858 4.95205014391716 4.79591679930676 4.77191445458597 4.80570359246173 5.25283853482838 4.38499739308213 5.98155684699468 4.92474610649647 5.74893003584934 6.0435358056554 4.54565213814685 4.91701669861721 5.57094679351093 4.78781641368457 4.93101709807878 0.218146340768022 0.210581202007121 0.213812794458077 0.214250795450280 0.208186686251193 0.21515725862607 0.220471588079472 0.212135602001099 0.210558251371257 0.209841245696191 0.219042812282193 0.209485703464236 0.209578896202206 0.218695238569005 0.215118044830489 0.212663912306341 0.220241270712718 0.217415665682003 0.211589283567913 5 5 - 8746784 8747136 8746957.636 8746608 8747200 - gene protein_coding_gene TRUE TRUE AT5G25240.1 similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G14890.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80961.1) -0.429002955205871 -5.35373021626694 0.000543214358287874 0.0223292144574241 7.25835129969101 9.77155360462702 -0.429002955205871 0.062835130163718 AT5G47210_at 9.69078299752261 9.79744203962881 9.94373915677622 9.8990068865514 9.90494443296208 9.84241798126416 9.66045221160288 10.0262723614818 9.5430965050939 9.88577590985917 10.1150145563309 10.3141800875783 10.1112582699849 9.9885063911339 10.3847222440331 10.0830569460301 10.0463796088889 9.78689317690369 9.73563227212317 0.0716266433265389 0.0705892709933531 0.0739064777406407 0.076322912760316 0.0721710905125864 0.07358451599491 0.0749398042990453 0.0761117883285268 0.0824246765096423 0.0762054430822936 0.0771372289714171 0.0705892709933531 0.073721570153755 0.0783474551821143 0.0751098966644738 0.0711382786548763 0.0763239256950934 0.073069276926406 0.0771015906815741 5 5|0 -|/ 19186460 19187351 19186804.222 19186249 19188490 - gene protein_coding_gene TRUE TRUE AT5G47210.1|AT5G47210.2|AT5G47210.3 nuclear RNA-binding protein, putative similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G17520.1); similar to nuclear RNA binding protein, putative [Brassica oleracea] (GB:ABD64914.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861)|similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G17520.1); similar to nuclear RNA binding protein, putative [Brassica oleracea] (GB:ABD65067.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861) -0.434358659973922 -5.31026673491401 0.000574002950842891 0.0234540770978182 7.2109129333533 19.7582587447084 -0.434358659973922 0.0672715513899379 AT5G45040_at 5.25645912485661 5.29295337993768 4.37423670475659 4.70279290290418 5.0921618585078 5.2860261976801 5.58591012160749 5.14945034220854 3.56461433028797 4.24133248510306 4.71241808646487 6.2579009779836 5.12529657173286 5.25789563028276 6.42126319544938 5.73451864243213 5.26721077451217 4.51668493135477 4.61033166729356 0.248458552244493 0.247329442718387 0.257655184646216 0.257466901715735 0.243070081932407 0.255236048723876 0.245594129877109 0.245686126947342 0.246902578859293 0.251635796382754 0.243344360136310 0.246486697822333 0.248717623694049 0.246410776307242 0.246050034646062 0.241266763232795 0.25349686401652 0.245032330173815 0.247030181138448 5 0|5 /|- 18192798 18193835 18193171 18192598 18194115 - gene protein_coding_gene TRUE TRUE AT5G45040.1 cytochrome c6 (ATC6) Identical to Cytochrome c6, chloroplast precursor (Soluble cytochrome f) (Cytochrome c553) (Cytochrome c-553) (Cytochrome c-552) (Atc6) (petJ) [Arabidopsis Thaliana] (GB:Q93VA3;GB:Q8SKV3;GB:Q9FL93); similar to electron transporter protein [Brassica rapa] (GB:ABK56012.1); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c, class I; (InterPro:IPR003088); contains InterPro domain Cytochrome c region; (InterPro:IPR012282) -0.51064585692851 -5.29656594522532 0.000584097507421534 0.0237720252708997 7.19589039101693 9.86770287680975 -0.51064585692851 0.100515048117475 AT5G18150_at 6.12247799933892 6.48985068409561 6.50584985976652 6.65697387591391 6.94152355851962 6.73298782466496 5.86493683261722 5.92225647957526 6.06377584181236 6.24888184810676 6.8894312114315 7.01678561253674 6.76098106260456 7.0941359433934 6.52673438604166 6.92498550687647 6.33290018082307 6.72977211723251 6.32462775872741 0.179516656950217 0.168702545572167 0.173387461207386 0.179286726338767 0.176013011161393 0.184862996520181 0.178323487546069 0.174902000371025 0.205246732993917 0.170289503867925 0.169038606119391 0.167911223347797 0.172213305181581 0.175357569668431 0.176962376066013 0.167911223347797 0.183692897116025 0.179924909274149 0.169087296626882 5 5 - 6000048 6000300 6000196.6 6000016 6000333 - gene protein_coding_gene TRUE TRUE AT5G18150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58375.1); similar to hypothetical protein MtrDRAFT_AC156827g5v1 [Medicago truncatula] (GB:ABE86386.1); contains domain UNCHARACTERIZED METHYLTRANSFERASE (PTHR12133:SF1); contains domain UNCHARACTERIZED METHYLTRANSFERASE (PTHR12133) -0.455536954161998 -5.28189839824256 0.000595118581360105 0.0241727022184944 7.17977122713446 12.9030542570613 -0.455536954161998 0.078272349341145 AT5G54440_at 6.9390401631722 7.45902184909158 7.39266260997322 7.5852881904017 7.8495739427016 7.6191911283678 7.26634804139267 7.2216685135099 7.39633305600622 7.47946168597479 8.21377036593796 8.33554335354123 7.85291571753191 8.02257638180686 7.75752985733705 7.79858848998709 7.69937195584247 8.17597237372896 7.50573239267235 0.165607578093586 0.163618312388540 0.167155673008864 0.166662818102872 0.162716260191760 0.164654665143203 0.158446842038889 0.168408366079653 0.175784002688227 0.16202359610663 0.171138018735917 0.169024916281651 0.158862411466429 0.168818387453488 0.159748391541221 0.159259811435403 0.175433467206772 0.168356639530505 0.165279143132465 5 5 + 22124208 22124897 22124606.273 22117162 22125059 + gene protein_coding_gene TRUE TRUE AT5G54440.1 binding similar to Os12g0554400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066991.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.517427310523897 -5.26798965876726 0.000605778451658318 0.0245088151897819 7.16445097420653 15.1378706082507 -0.517427310523897 0.104201050117547 AT5G24300_at 9.48723340483958 9.48403963315882 9.53874332879863 9.5296456043606 9.8012578560813 9.65636721558784 10.0274919562129 9.97309172567322 9.5851221599656 10.0022808058643 10.6069614473321 10.6805002460011 10.4477134537191 10.6251611214740 10.6758628302341 10.7740819033818 10.2947717308422 10.6264936491630 10.0473221904502 0.0807856964974397 0.0802504520303255 0.0815260217431578 0.0814018849386212 0.083188341370355 0.0826521338374462 0.079255097206258 0.0795934523285207 0.0962468778592988 0.0820093260881392 0.0817152999479766 0.0789400565927885 0.0791263254896218 0.081568691182081 0.0801941316854208 0.0774657348417311 0.0818988162692014 0.0829928220492385 0.083319874355161 5 5|0 +|/ 8269566 8270827 8270434.75 8266801 8271199 + gene protein_coding_gene TRUE TRUE AT5G24300.1 SSI (STARCH SYNTHASE I); transferase, transferring glycosyl groups SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch. Identical to Soluble starch synthase, chloroplast precursor (EC 2.4.1.21) (SSS) [Arabidopsis Thaliana] (GB:Q9FNF2;GB:Q9SEI7); similar to glycogen synthase, putative [Arabidopsis thaliana] (TAIR:AT3G01180.1); similar to Soluble starch synthase 1, chloroplast precursor (SS I) (Soluble starch synthase I) (GB:P93568); similar to starch synthase I precursor [Phaseolus vulgaris] (GB:BAD18845.1); similar to soluble starch synthase I [Colocasia esculenta] (GB:AAN37578.1); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.368637430309557 -5.25886912646771 0.000612881072489103 0.0247474602540608 7.15438634571956 19.9220763488533 -0.368637430309557 0.0268349989547468 AT5G16540_at 6.9271387341725 6.77293229687592 7.37376227558831 6.7812110453029 7.6668527776422 7.41430517611991 7.83395799589196 7.32698659018971 7.82961406917915 7.5934468365544 8.50218474448905 8.4706965685044 8.10591037415268 8.26800028465082 8.1673852946854 8.72961823667537 8.005966951664 8.12602000072312 7.7271819780157 0.164308321563129 0.152382740234756 0.154759305206131 0.161963526528417 0.149936110683149 0.156206407385377 0.148897409044883 0.149189227956456 0.158808330556522 0.150650060378116 0.147313055044051 0.145846818507089 0.153524398088181 0.158283393671693 0.151104931100667 0.148902459803262 0.153882117622751 0.15256710006602 0.160163083538308 5 5 + 5404356 5404987 5404707.545 5403191 5405157 + gene protein_coding_gene TRUE TRUE AT5G16540.1|AT5G16540.2|AT5G16540.3 ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding Encodes a zinc finger protein. Identical to Zinc finger type domain-containing protein ZFN3 (ZFN3) [Arabidopsis Thaliana] (GB:Q8L7N8;GB:Q8LFU7;GB:Q9XFB9); similar to ZFN1 (ZINC FINGER PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G02830.1); similar to Zinc finger CCCH domain-containing protein ZFN-like (GB:Q9SWF9); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571)|Identical to Zinc finger type domain-containing protein ZFN3 (ZFN3) [Arabidopsis Thaliana] (GB:Q8L7N8;GB:Q8LFU7;GB:Q9XFB9); similar to ZFN1 (ZINC FINGER PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G02830.1); similar to Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] (GB:ABD28369.1); similar to Zinc finger CCCH domain-containing protein ZFN-like (GB:Q9SWF9); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.628069184090208 -5.25110755633976 0.000618996666029945 0.0248479495920146 7.14580979544104 15.2690035789027 -0.628069184090208 0.144342205466266 AT5G54130_at 6.19649127940698 6.66024764086679 8.10699307185916 8.22341473490915 7.91145273910102 7.3753182730619 9.76693218240258 9.3838322591805 7.03600435880291 7.83228261699726 7.64558033230336 7.98196609605854 8.42811487942494 8.28331144339103 6.63134624714647 9.56900679518896 9.05229866564385 8.29151621579613 7.66306706071312 0.141295592576401 0.138780340316352 0.141992540464352 0.14015284045043 0.136250507755838 0.140681880966023 0.136415350819985 0.137635498515116 0.149628690704233 0.142069424912055 0.139509582740804 0.134050155055166 0.135042670601424 0.140875939902642 0.14304657674461 0.134079664074530 0.140724596158843 0.138715345577221 0.142180833269726 5 5|0 +|/ 21980151 21982477 21981259.263 21979826 21982830 + gene protein_coding_gene TRUE TRUE AT5G54130.2 calcium ion binding similar to endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G02270.1); similar to Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE85174.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.616400704646301 -5.23838382033199 0.000629165974005113 0.0251578959679076 7.13172704252713 15.8260072375353 -0.616400704646301 0.140891334434559 AT5G56710_at 10.5966379869135 10.6589653302122 10.5693536953330 10.8070723785154 10.7822612094200 10.6833538617638 10.5389553105065 10.8128839163634 10.6225890125457 10.7472396597503 11.0880409223838 11.3922959085941 11.0458902942323 10.8843196044488 11.3208978442547 10.7999851314703 10.6339909876059 10.7458463463156 10.7284109676595 0.0658785250010476 0.0672588294212958 0.0658312623233935 0.0645116107940012 0.0674222633110412 0.0658179105985654 0.0660502294855174 0.0639668496552776 0.0697450547420078 0.0666555528659169 0.0681912086472062 0.0639668496552776 0.0639668496552776 0.066408226755215 0.0657606646729154 0.0639668496552776 0.0676400271472978 0.0696215449428467 0.0656457789312748 5 5|0 -|/ 22961242 22961930 22961405.6 22961062 22962196 - gene protein_coding_gene TRUE TRUE AT5G56710.1|AT5G56710.2 60S ribosomal protein L31 (RPL31C) Identical to 60S ribosomal protein L31-3 (RPL31C) [Arabidopsis Thaliana] (GB:P51420;GB:Q8LEJ0;GB:Q9FJU1); similar to 60S ribosomal protein L31 (RPL31B) [Arabidopsis thaliana] (TAIR:AT4G26230.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) -0.425457362300898 -5.23379476439602 0.000632878127969589 0.0252571920358874 7.12664081706069 21.5253462577443 -0.425457362300898 0.0659459565610489 AT5G35360_at 9.47914761704713 9.5139316554667 9.05111532648443 9.21857235831182 9.85221052777139 9.53598474430721 9.9796565694041 9.97624409344045 9.99827471263477 9.8544393500412 10.9954354122464 10.9654119734008 10.4585937800087 10.8218145911595 11.1349561291590 10.3407039764653 10.1311730480932 10.8068514923762 9.7609909547715 0.0721037217185427 0.0694158347577161 0.0714173810654612 0.0707840402881653 0.069898509996051 0.0725013187938596 0.0709755823519539 0.0765530844660793 0.0703617807438847 0.0698429673998597 0.0682550093305339 0.0692728795198066 0.0682002845663024 0.0707559083608327 0.0694703510587256 0.068734431200196 0.0721351578785915 0.0707417623383506 0.0693484187833784 5 5|0 +|/ 13603996 13605020 13604549.429 13601388 13605726 + gene protein_coding_gene TRUE TRUE AT5G35360.1|AT5G35360.2 CAC2 (acetyl co-enzyme A carboxylase biotin carboxylase subunit) Encodes biotin carboxylase subunit (CAC2). similar to MCCA (3-methylcrotonyl-CoA carboxylase 1) [Arabidopsis thaliana] (TAIR:AT1G03090.2); similar to biotin carboxylase precursor [Glycine max] (GB:AAC23573.1); similar to acetyl-CoA carboxylase [Glycine max] (GB:AAF80469.1); similar to biotin carboxylase [Brassica napus] (GB:AAK60339.1); contains InterPro domain Acetyl-CoA carboxylase, biotin carboxylase; (InterPro:IPR004549); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Biotin carboxylase, C-terminal; (InterPro:IPR005482); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain Biotin carboxylation region; (InterPro:IPR011764); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481)|similar to MCCA (3-methylcrotonyl-CoA carboxylase 1) [Arabidopsis thaliana] (TAIR:AT1G03090.2); similar to biotin carboxylase precursor [Glycine max] (GB:AAC23573.1); similar to biotin carboxylase subunit (GB:AAC41659.1); similar to biotin carboxylase [Brassica napus] (GB:AAK60339.1); contains InterPro domain Acetyl-CoA carboxylase, biotin carboxylase; (InterPro:IPR004549); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Biotin carboxylase, C-terminal; (InterPro:IPR005482); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain Biotin carboxylation region; (InterPro:IPR011764); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) -0.415802545343287 -5.20360770728689 0.000657897619749275 0.0262047983421864 7.09309057524103 19.8649091396189 -0.415802545343287 0.0622184292119826 AT5G06970_at 7.72483887435851 7.62446240093731 7.97408323841077 7.9234019835609 8.3492596438901 8.33728482566529 8.10402311394009 7.79756493323221 8.5231531536432 8.31087373992989 9.49525472823555 9.2226834215259 8.76507430442018 8.95279598084619 9.17348251078037 8.68739896186228 8.45486127856644 8.91264987874784 8.27070007580625 0.119327031282174 0.124959047687935 0.113527575373346 0.119878087366134 0.118485732891735 0.125154180084652 0.125897405000107 0.117891065395808 0.134518755995542 0.117484967493065 0.114945345922639 0.118694304434664 0.114335327015521 0.118130061619816 0.118063953204998 0.118001410886270 0.120998349507441 0.120225699558695 0.117912410036107 5 5|0 -|/ 2158487 2159599 2158870.667 2158229 2166399 - gene protein_coding_gene TRUE TRUE AT5G06970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20010.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68377.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE85501.1); similar to unknown protein [Oryza sativa] (GB:AAK14418.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528) -0.404553115182812 -5.19271867167224 0.000667184468685599 0.0264720988922753 7.08094880974842 16.6424986048742 -0.404553115182812 0.0565293168373447 AT5G28840_at 11.1141309451982 11.0852400259514 11.6346860006247 11.6354076709166 11.5392721546230 11.4977846983107 11.4673549431057 11.4212638054736 10.9376233409837 11.0687457713255 11.0397074461782 11.0247859543491 11.2374241598705 11.1329770291918 10.8385157001631 11.3681199906972 11.2822946794326 10.9751523530560 11.0025145310266 0.0723041972149739 0.0669272758650841 0.0694551435435868 0.0694713349762539 0.069242189909296 0.0679200754844554 0.0690288211657376 0.0706766607957225 0.0745789032620384 0.0669272758650841 0.0669272758650841 0.0684098857101386 0.0673276707232685 0.0695172874442285 0.0684419610059284 0.0678777726716354 0.0709577752700671 0.0687031934445573 0.0689515940843594 5 5 - 10862481 10863104 10862817.455 10862177 10864907 - gene protein_coding_gene TRUE TRUE AT5G28840.1 GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD binding / catalytic Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose. Identical to GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man 3,5-epimerase) [Arabidopsis Thaliana] (GB:Q93VR3); similar to UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2), catalytic/ dTDP-glucose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT3G62830.1); similar to NAD-dependent epimerase/dehydratase family protein-like protein [Solanum tuberosum] (GB:ABB72807.1); similar to Os10g0417600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064609.1); similar to GDP-D-mannose-3',5'-epimerase [Malpighia glabra] (GB:ABB53472.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.35316761314424 -5.18301895409917 0.00067557689766793 0.0267534405049774 7.07011550352992 22.4820592198068 -0.35316761314424 0.0118397824552766 AT5G05250_at 7.18975144366992 7.01241094069912 7.10352637946204 6.48554981296802 9.06822270470525 8.16036969701323 7.56643755894644 7.32463748240264 8.86129115578027 9.63542920613608 8.66907656645129 9.25413726234284 9.91500966905778 9.36290974246414 8.69797749307314 9.5062146911369 9.7392681662249 7.42488890314088 9.51931874513072 0.186470175191465 0.192388890800048 0.19103147178703 0.198001890350425 0.184854397590097 0.174149542673325 0.181679526150698 0.192774966422142 0.186641734752335 0.179497244949695 0.179295379754736 0.175392620153878 0.176787718128324 0.184480464028889 0.177494641513209 0.175581994001006 0.179379608264359 0.206896244531296 0.179970496995203 5 5 - 1557183 1557675 1557391.182 1557038 1557999 - gene protein_coding_gene TRUE TRUE AT5G05250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56360.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP03420.1) -0.780473596473948 -5.18014757812719 0.000678083208941594 0.0268010528465818 7.06690535717536 16.6937957595261 -0.780473596473948 0.197009571006659 AT5G57120_at 5.45445579393974 5.77806200401734 5.78185877382038 5.70953144087759 5.80633076244661 5.87067076337141 4.94184010598626 4.6139147183697 5.721375493133 5.24274163032473 6.20859980254098 6.27798956892968 5.82586283572577 6.12279457997542 6.31106953867149 6.24919080325648 5.93275051602983 5.89721332015716 5.84572851496357 0.173361405742044 0.163934884218217 0.166589461106087 0.164671642625686 0.169444417207493 0.178028161098440 0.180010149032710 0.177701364624821 0.167677907007540 0.169752116613871 0.167820868641749 0.172364962417688 0.173811405436150 0.164389100593148 0.162229877613618 0.175652280422889 0.162322729627333 0.170652113617660 0.166035987169667 5 5|0 -|/ 23140023 23140852 23140399.375 23139766 23141739 - gene protein_coding_gene TRUE TRUE AT5G57120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60030.1); similar to BRI1-KD interacting protein 132 [Oryza sativa (japonica cultivar-group)] (GB:BAD11359.1); similar to Os12g0613500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067264.1); contains InterPro domain SRP40, C-terminal; (InterPro:IPR007718); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) -0.452932655887047 -5.16949066726446 0.000687473810354043 0.0270681056929057 7.05497834592811 11.3478159204209 -0.452932655887047 0.0814694081663681 AT5G13850_at 7.66373701088779 7.51862318568199 8.1117555187606 8.17661041242099 7.99292001684104 8.02230381743569 7.58253885774956 7.73516763092194 7.61778718221799 7.42137551604624 8.08910775205264 8.24132323554213 8.24822952683469 8.25721134008393 8.44001444262106 7.90394373836668 7.86847772961698 8.1695222448021 7.37016621203045 0.120334563325468 0.117049642230468 0.119811416484281 0.114747043568114 0.127840364213173 0.128990457753138 0.121707776309342 0.120859316207047 0.133510135847385 0.121229666446533 0.119390945074740 0.122255197039426 0.121129721901959 0.129495387178455 0.122454623660190 0.117478082335863 0.127685780803807 0.125838887067448 0.122221361251153 5 5|0 +|/ 4471372 4472487 4472189.7 4471280 4472857 + gene protein_coding_gene TRUE TRUE AT5G13850.1 nascent polypeptide-associated complex (NAC) domain-containing protein Identical to Nascent polypeptide-associated complex subunit alpha-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3) [Arabidopsis Thaliana] (GB:Q6ICZ8;GB:Q9FFY7); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT3G12390.1); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABD32881.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715) -0.374866731061551 -5.16449747650286 0.000691922156327734 0.0271911613614506 7.04938313376436 15.6614595836732 -0.374866731061551 0.0384723246986242 AT5G66090_at 6.99414654282544 7.09171680271261 7.27172328808326 6.93576119267995 8.03273056115174 7.37593742361678 7.57454319540954 7.59455298429547 7.04941169276856 7.40404706806986 8.11648016612123 8.00976194794597 7.93107516482954 8.36865183476939 7.99708673318835 8.20611290721698 7.42701577602537 7.93888697774291 7.35876905797691 0.187148333603986 0.173225892748463 0.187157590779624 0.179111408714685 0.180373179936139 0.188605915763958 0.173078430700259 0.178258265760739 0.189893385384159 0.169098086856875 0.168745904076767 0.169546223440736 0.173688111464612 0.178207800163288 0.175310814277330 0.170224911012707 0.169934421608652 0.168745904076767 0.172838437903703 5 5|0 +|/ 26443105 26444126 26443641.778 26442962 26444398 + gene protein_coding_gene TRUE TRUE AT5G66090.1 similar to Os09g0541700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063816.1); contains domain no description (G3D.3.40.50.1420); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402) -0.572965464498335 -5.16064539940815 0.0006953752462198 0.0272747104123770 7.04506359557008 14.9939522712227 -0.572965464498335 0.128826162512895 AT5G16240_at 5.7922815084348 6.5805453396905 5.12297752774247 5.80410517858114 6.40894843525932 6.73706476929217 6.83361872128822 7.50065994360665 4.98414832450482 5.93076234242954 7.33631092131086 7.10468313323776 6.76580685243788 6.92930118927285 6.23123809654159 6.02037879239468 6.73526754827187 6.63359727530129 6.12937270370919 0.248760861843087 0.230905716801764 0.258285449296032 0.232930919257992 0.237789346942897 0.23405910970661 0.233640373591785 0.236938600047486 0.264245588110923 0.226773702928234 0.234404501924422 0.238514138742385 0.225120272907719 0.230415559811236 0.226011465375761 0.231091923689557 0.236632774818669 0.238023804427839 0.225266811611013 5 5 + 5308861 5309518 5309061.182 5306810 5309935 + gene protein_coding_gene TRUE TRUE AT5G16240.1 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02630.1); similar to stearoyl-acyl carrier protein desaturase [Linum usitatissimum] (GB:CAA07349.1); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) -0.854003603913497 -5.15159981576898 0.000703557648307357 0.0274907224318582 7.03490995221524 12.5480255611422 -0.854003603913497 0.221476104167105 AT5G07320_at 5.37854259305477 5.68601061410236 5.83999987578947 5.66156233431291 5.87790646562572 5.87280517200153 5.39684975586177 5.8657188627891 5.30984239903159 5.31424567233992 6.20423777053886 6.58464832250188 5.76938640134002 6.41498266358749 6.69065172594129 5.88817323504605 5.40312426049549 5.94292466967448 5.37181728515254 0.207021392443759 0.203921651394852 0.204341322706482 0.198931855947204 0.202829244321995 0.210292991163968 0.204358473691101 0.216504274307588 0.217296102352247 0.211389267835749 0.205534089574364 0.203361285546925 0.207958659573875 0.202864253986380 0.206369056967352 0.206773159458219 0.227966037784158 0.216288083902037 0.208062148341593 5 5|0 +|/ 2311377 2312019 2311692 2309912 2312288 + gene protein_coding_gene TRUE TRUE AT5G07320.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G61810.1); similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G51050.1); similar to putative Mcsc-pending-prov protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15855.1); similar to Os06g0604500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058018.1); similar to Calcium-binding EF-hand; Adenine nucleotide translocator 1 [Medicago truncatula] (GB:ABE80214.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Graves disease carrier protein; (InterPro:IPR002167); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.498069342146896 -5.1319558671291 0.000721689109375344 0.0281456799477174 7.01280964120543 11.4195417508499 -0.498069342146896 0.101829223256058 AT5G23890_at 7.85673892082115 7.68621914585863 8.24108137874253 7.74065905734344 7.88362043653215 7.69209372891384 7.81131779133208 7.4372544190755 7.30337776825675 7.69255953284093 8.13490937728714 8.26206308376211 7.7353884907574 7.99040081959671 8.11307409653942 7.97098575998436 8.11045049432816 8.20913269505473 7.29238334631431 0.148914564114933 0.144813909858841 0.148700109702622 0.149757939921377 0.145594660150049 0.146907943212971 0.154688288235074 0.142686171078432 0.148740447759122 0.142686171078432 0.152740157503525 0.147238856074415 0.15169662106584 0.148450380551851 0.145055347548395 0.153810595192970 0.147163863599517 0.144434027382532 0.142697757283805 5 5|0 +|/ 8062313 8062973 8062674 8058692 8063204 + gene protein_coding_gene TRUE TRUE AT5G23890.1 similar to oxidoreductase/ transition metal ion binding [Arabidopsis thaliana] (TAIR:AT5G52410.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44759.1); similar to Os03g0862100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051986.1) -0.535171444733621 -5.11301402756847 0.00073965342189502 0.0287372236020098 6.99143429573019 15.5412435188113 -0.535171444733621 0.116873461057517 AT5G56850_at 8.74740714822577 8.45264956509848 9.30531843481354 8.88723175272948 9.64614713529098 8.93458393623962 10.0723052416629 9.61941370577724 10.0351197335348 10.4447090673917 10.5503841736321 10.5389472233171 10.1769589421735 10.1631236065657 10.3473710428522 10.6461457773507 10.2381528608227 10.4424393445137 10.6094272915074 0.107008860141918 0.105783613706085 0.101272106848127 0.112554060683226 0.100620616197918 0.100972187544282 0.0995224558438187 0.0999370559121592 0.104455332530760 0.0971610296303266 0.0999807265635625 0.0983165151215808 0.0971610296303266 0.107119361506437 0.0991285231878391 0.099040219025407 0.0987263601320479 0.100887287092360 0.0982604016857893 5 5|0 -|/ 23002672 23003268 23002914.25 23002419 23005239 - gene protein_coding_gene TRUE TRUE AT5G56850.1|AT5G56850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os05g0232200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054981.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98490.1); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to GA14882-PA [Drosophila pseudoobscura] (GB:EAL32833.1) -0.688365074905184 -5.104595030771 0.000747793121028669 0.0289986516241774 6.98191320662196 19.5836449827538 -0.688365074905184 0.170712214544686 AT5G11980_at 7.04556081975315 7.34969396167303 7.28174228925354 7.2385157784539 7.88095431908374 7.55831997281622 7.23035127359477 7.14244402648392 6.68730841014134 6.70682522292572 7.70500161199918 7.94916966505442 7.25194890381581 7.5009254950196 8.04149526116552 7.35333513712532 6.29360014740866 7.75805915458086 6.48260415580388 0.225106610561094 0.213435690283419 0.225745406113564 0.220087332017080 0.224897468529556 0.223536254574265 0.223366988879146 0.214804253588325 0.21904599968817 0.213996770883276 0.212236021111392 0.214428305293784 0.214417062497074 0.219310462013445 0.211674339758861 0.212805525184246 0.231103890321448 0.211674339758861 0.217422527867815 5 5 - 3868839 3869678 3869272.273 3868653 3872270 - gene protein_coding_gene TRUE TRUE AT5G11980.1 conserved oligomeric Golgi complex component-related / COG complex component-related similar to Os12g0538300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066940.1); similar to Gol (GB:CAL50480.1); contains InterPro domain Dor1-like protein; (InterPro:IPR007255) -0.440616007632107 -5.10116681949836 0.000751135389202448 0.0290734058792677 6.97803261068393 14.3945833976281 -0.440616007632107 0.0785801774142795 AT5G17710_at 8.54350151295766 8.61650091611712 9.01350199938972 8.97661329353305 9.11552758221744 8.89577691774874 9.04977759196823 9.2780252548694 9.01309665516064 9.21141339896547 9.68405518397586 10.0049496543909 9.52071733621293 9.62910646510371 9.95781836354912 9.7995086251686 9.33144633694725 9.45707634388386 9.03619889905001 0.121517104076950 0.118341959798461 0.126407832041735 0.119581207194244 0.122349405063644 0.128669230122558 0.123937052745498 0.120270667693622 0.127927154043823 0.12719333749547 0.119594860747918 0.118112395182193 0.126089615331376 0.119892747264247 0.119874635557584 0.119284808473813 0.126069120654223 0.122342327418545 0.128683017970968 5 5 - 5839585 5840604 5840155.364 5839345 5841726 - gene protein_coding_gene TRUE TRUE AT5G17710.1|AT5G17710.2 EMB1241 (EMBRYO DEFECTIVE 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization similar to co-chaperone grpE family protein [Arabidopsis thaliana] (TAIR:AT1G36390.2); similar to Molecular chaperone of the GrpE family (ISS) [Ostreococcus tauri] (GB:CAL54976.1); similar to Os04g0431100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052822.1); similar to Os02g0612000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047409.1); contains InterPro domain GrpE protein, head; (InterPro:IPR009012); contains InterPro domain GrpE protein; (InterPro:IPR000740) -0.397001309406148 -5.09359792800806 0.000758572038617801 0.0291890807604906 6.96945752566141 18.3161470201232 -0.397001309406148 0.0566280342226663 AT5G17310_at 7.93979797149696 7.87053456445286 9.25583686553047 9.01019965300454 8.63661889619443 8.55656782085386 9.61284737223112 9.50192560702786 8.17123703724983 8.90082055053498 9.06960557528886 9.23198372910214 9.30035668511028 9.0705833501934 8.66177032204102 9.65963494628352 9.83286882098157 9.06215363858684 8.58338977849355 0.105471155051827 0.102553982208913 0.106607875243447 0.105608947868272 0.103773784475488 0.102977395252596 0.107487912705312 0.103745757761875 0.123514001287093 0.105322876351959 0.106558538173173 0.102260159366159 0.104918879338189 0.107867403765079 0.108101271881613 0.102747276455726 0.107533172711298 0.107530093717714 0.103973224444149 5 0|5 /|- 5697083 5697572 5697311.25 5696647 5700924 - gene protein_coding_gene TRUE TRUE AT5G17310.1|AT5G17310.2 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative Identical to UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP- glucose pyrophosphorylase 1) (UDPGP 1) (UGPase 1) [Arabidopsis Thaliana] (GB:P57751;GB:Q3E9G5); similar to UGP (UDP-glucose pyrophosphorylase), UTP:glucose-1-phosphate uridylyltransferase [Arabidopsis thaliana] (TAIR:AT3G03250.1); similar to UDP-glucose pyrophosphorylase [Populus tremula x Populus tremuloides] (GB:ABB88893.1); similar to UDP-glucose pyrophosphorylase [Cucumis melo] (GB:ABD98820.1); similar to UDP-glucose pyrophosphorylase [Bambusa oldhamii] (GB:AAO48422.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618)|Identical to UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP- glucose pyrophosphorylase 1) (UDPGP 1) (UGPase 1) [Arabidopsis Thaliana] (GB:P57751;GB:Q3E9G5); similar to UGP (UDP-glucose pyrophosphorylase), UTP:glucose-1-phosphate uridylyltransferase [Arabidopsis thaliana] (TAIR:AT3G03250.1); similar to UDP-glucose pyrophosphorylase [Populus tremula x Populus tremuloides] (GB:ABB88893.1); similar to UDP-glucose pyrophosphorylase [Amorpha fruticosa] (GB:AAL33919.1); similar to UDP-glucose pyrophosphorylase [Cucumis melo] (GB:ABD98820.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618) -0.386146497214846 -5.09235109497933 0.00075980472805592 0.0291890807604906 6.96804396275333 17.6920088049530 -0.386146497214846 0.0501102698770596 AT5G17670_at 7.90547804521826 7.99981431992961 8.49077573609613 8.18655077161464 8.78058584526906 8.48784815844514 9.06796269956803 8.80929402026357 9.14794842749088 9.29514507398908 10.0320276537306 9.88329895742862 9.80618750103917 9.86676410713456 9.73526383363489 10.0900473465225 9.63643636072812 9.79046403479458 9.34405893250115 0.110909914871064 0.109544207933540 0.110269496546757 0.114077148809848 0.106258713602087 0.112871004661104 0.109129437643684 0.110155992888035 0.115418690828970 0.108067733431895 0.113875626290513 0.107540098809797 0.11611794113569 0.115646583863566 0.119407379905321 0.106683231915061 0.110281783394919 0.114496043615458 0.106258713602087 5 5|0 +|/ 5821886 5822570 5822306 5821062 5822738 + gene protein_coding_gene TRUE TRUE AT5G17670.1 similar to Os02g0129900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045780.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56717.1); contains InterPro domain PGAP1-like; (InterPro:IPR012908) -0.456024561925763 -5.05753939529676 0.000795113583658833 0.0301510259779771 6.92846534709563 18.0247613840691 -0.456024561925763 0.0872265893231956 AT5G14050_at 5.33537269453641 5.57688117140436 6.12510527945133 5.8106527371477 5.59864431275971 5.74642126735491 5.10142166748408 5.54658164144742 3.96754729135904 4.65792431580019 5.10099398059117 5.49213047788005 4.84076436269949 4.35926366419603 5.08352084324929 5.04562276263735 4.86963698392972 4.12544896733084 4.6082688670631 0.235544132090875 0.229505524553562 0.234359641135470 0.236180927771885 0.227501210356613 0.226201725174975 0.234332714763809 0.225875036133622 0.240433276802574 0.227191332396976 0.229838747036587 0.237615761135696 0.22555577546061 0.239248969132761 0.234440700492885 0.229590033590617 0.247147734988898 0.233388356978687 0.228990706134860 5 5 + 4534603 4535148 4534898.364 4533263 4535303 + gene protein_coding_gene TRUE TRUE AT5G14050.1 transducin family protein / WD-40 repeat family protein Identical to U3 small nucleolar RNA-associated protein 18 homolog [Arabidopsis Thaliana] (GB:Q9FMU5); similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G25150.1); similar to WD40-like [Medicago truncatula] (GB:ABD32295.1); similar to Inorganic pyrophosphatase; WD40-like [Medicago truncatula] (GB:ABE84702.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.501246532205838 -5.04990139521088 0.000803096217785623 0.030397646447017 6.91975254636662 10.2430948864757 -0.501246532205838 0.106286023667920 AT5G46920_at 5.85726446194626 5.92938991421889 6.79812385813032 6.97209554131736 6.53127280002536 6.58648636796518 6.02199546728205 5.90439809587819 5.12195022383262 5.17007505822695 5.35118525673235 5.46329140349089 6.05738891063234 5.48022998421871 5.76305084378129 6.48825586229737 6.18965046319516 6.08612391892534 5.71584817925722 0.231514528269666 0.229712515527587 0.232081137654433 0.232738589365548 0.230586534798428 0.2388070574881 0.228140798478800 0.234780639717447 0.232038744348770 0.239819746402904 0.231405127973652 0.230342016508286 0.237846217848158 0.233943253968256 0.226071705768327 0.226071705768327 0.235171989022801 0.226071705768327 0.240176408114609 5 5 + 19072556 19073014 19072753.636 19070855 19073234 + gene protein_coding_gene TRUE TRUE AT5G46920.1 intron maturase, type II family protein similar to intron maturase, type II family protein [Arabidopsis thaliana] (TAIR:AT1G30010.1); similar to intron maturase, type II family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97559.1); similar to Os10g0567500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065434.1); contains InterPro domain RNA-directed DNA polymerase (Reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) -0.367618486112949 -5.04510857303253 0.00080814962179483 0.0305326910157689 6.91427997667952 11.9230557637695 -0.367618486112949 0.0395935710504835 AT5G01510_at 4.50315673125818 5.02026063526875 5.1226523826743 4.5379603456889 6.18502470156967 5.79761621925334 6.22036653075043 5.90734953964147 4.54280523595005 4.86315820609747 5.69086555428575 5.90914419003862 5.47865537530693 5.78096669005879 5.35521718250207 5.6981067247609 5.0713202609567 5.43194065404591 5.34201877804741 0.220078305805656 0.219821779562139 0.226784483312388 0.220719627664990 0.219638288781069 0.237336986196589 0.218741822199458 0.220776956232314 0.229476481324483 0.221159082950371 0.224044403551341 0.220533816348441 0.226040082497551 0.222183029749744 0.228844130647592 0.224126448913900 0.222448351051510 0.229655157730976 0.218887579937114 5 5 + 203686 205105 204240.364 201605 205385 + gene protein_coding_gene TRUE TRUE AT5G01510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45890.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE84675.1); similar to Os01g0141600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041984.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) -0.648779462658665 -5.04067230353473 0.000812857808718993 0.0306542212970913 6.90921087600775 10.6458089619428 -0.648779462658665 0.160234619950102 AT5G55400_at 3.6767005912235 4.38769660912476 3.77680522343683 4.60961806350110 3.77093315540674 3.59920494830276 5.18894701447425 5.19503386312487 5.04478607066715 4.78304137165758 6.57637843973032 7.39353148556927 5.32151782632937 5.68247832781594 6.51248647081506 5.35163856131207 3.88727239194314 5.95798374364286 4.71009859753439 0.257100539960896 0.254259856821134 0.257861162468436 0.263704616920220 0.260189416850581 0.261556047215971 0.254259856821134 0.258942356800146 0.285894362709788 0.255031500999654 0.258394540217219 0.254259856821134 0.263468667643287 0.254298912053276 0.262116210114018 0.254259856821134 0.285552687093575 0.265471997410698 0.257662127288627 5 5 - 22472782 22473447 22473001.545 22472761 22476176 - gene protein_coding_gene TRUE TRUE AT5G55400.1 fimbrin-like protein, putative Identical to Putative fimbrin-like protein 3 (FIM3) [Arabidopsis Thaliana] (GB:Q9FJ70); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G35700.1); similar to ATFIM1 (Arabidopsis thaliana fimbrin 1), actin binding [Arabidopsis thaliana] (TAIR:AT4G26700.2); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT2G04750.1); similar to Os02g0588300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047274.1); similar to Os02g0719100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047943.1); similar to fimbrin/plastin-like [Triticum aestivum] (GB:AAC49813.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) -0.741322348121734 -5.02571279165892 0.000828954648328597 0.0311382591225757 6.89209150868345 9.61631055983158 -0.741322348121734 0.191819225031611 AT5G28740_at 7.2188579008232 7.10459604381599 7.67377084965268 8.00386138173697 7.53058813382768 7.50512235793517 7.18591972684345 7.29735210259992 6.98048616877913 6.55653913739059 7.47673653858171 7.84367879006212 7.0960376049253 7.33984213887593 7.92240031697073 7.61926283183624 7.36585768028541 7.59607961653972 6.87778193024744 0.161912185196324 0.172940352927324 0.165407897485768 0.162317606659482 0.164827027879835 0.169595785922004 0.164949803091407 0.159387460377426 0.172806445694334 0.167581659527079 0.159691979451485 0.161754473550497 0.162285477463378 0.168772346544404 0.160773439751256 0.161583503098805 0.162343539141373 0.156785384886541 0.156956324081052 5 5|0 +|/ 10783094 10783711 10783338.333 10780778 10783915 + gene protein_coding_gene TRUE TRUE AT5G28740.1 transcription-coupled DNA repair protein-related similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to XPA binding protein 2 [Danio rerio] (GB:NP_955466.1); similar to hypothetical protein LOC555321 [Danio rerio] (GB:NP_001038248.1); similar to Xab2 protein [Danio rerio] (GB:AAH56771.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.404043542578832 -5.0245335642389 0.000830238136221805 0.0311382591225757 6.89074032572877 14.6087199047704 -0.404043542578832 0.0636034658147348 AT5G61830_at 6.48466885682197 6.32247870336978 6.36410139893326 6.45273927093447 7.58908911466993 6.95930177485597 6.58113569900185 6.7897515869264 6.03504476842474 5.76365870330356 6.7229743570397 7.23501015908387 6.54798574118278 7.18383681983988 6.48618497105333 6.86167750050217 5.86623947823735 6.5134719176218 6.03481533443877 0.206286026295651 0.207724795989129 0.206808646217832 0.202936040860522 0.199896132921513 0.209194795739348 0.210888547093943 0.196858887724831 0.213329735311343 0.203414726758675 0.198995397558874 0.20306003787656 0.196491753197317 0.204009499947788 0.198460393511769 0.196491753197317 0.214822004129932 0.205507898498983 0.196491753197317 5 5 + 24855360 24855945 24855703.545 24854528 24856196 + gene protein_coding_gene TRUE TRUE AT5G61830.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G51030.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE80213.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.531584215869731 -5.0207292458315 0.00083439350980891 0.0312253775774582 6.886379567141 13.0037477440854 -0.531584215869731 0.119183665420897 AT5G22760_at 7.73373554301197 7.38768949608623 8.02104266710709 7.94343447163678 8.20759943521226 7.9841402287711 7.10300132730337 7.2584942396297 7.53792136667234 7.25518215986968 7.78152231858607 7.87433910220394 7.78328982694195 7.94837523249082 7.56668165814065 8.05458628501411 8.01795757526135 7.68331139121035 7.55269508431478 0.139277873494873 0.137758383214838 0.145237583474762 0.148133794543368 0.137126485084090 0.138632781176983 0.134812614473060 0.144432407262148 0.141695461982191 0.138024963405923 0.145423163709124 0.139509741544086 0.144817045988805 0.145133259485667 0.138775078367776 0.135311295884525 0.136540087383347 0.142709120055923 0.141511372445305 5 5 + 7577113 7577630 7577374.273 7571638 7577869 + gene protein_coding_gene TRUE TRUE AT5G22760.1 PHD finger family protein similar to peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein [Arabidopsis thaliana] (TAIR:AT5G35210.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX92741.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DDT; (InterPro:IPR004022) -0.431001953938377 -5.01960014747749 0.000835631131370085 0.0312253775774582 6.88508482343164 15.3485709064365 -0.431001953938377 0.0773697503474167 AT5G63000_at 5.78306951848429 5.75253139927601 6.41869280870987 6.17338179796031 6.51378563146492 6.19384619515736 5.82045906996154 5.73325132885356 5.46734873793802 5.58917066710776 5.8730727935031 6.55270670320395 6.11489565769374 6.27264977801996 6.42831694835164 5.96434216784894 5.60749727286893 6.07255514307682 5.31018250553197 0.170227956079086 0.167723454551374 0.171451903011854 0.172565887968489 0.162357815598198 0.171131741329256 0.162314080798079 0.164786166086711 0.173959764127658 0.168327284997589 0.163672971723714 0.164216850118566 0.16499919985041 0.167111429990158 0.161530925596128 0.161530925596128 0.179451914013438 0.162046652560272 0.172460967752221 5 5|0 -|/ 25297395 25297958 25297682.333 25297238 25298759 - gene protein_coding_gene TRUE TRUE AT5G63000.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57827.1); similar to Os01g0271000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042705.1) -0.418829411554479 -5.01681129403798 0.000838696566484346 0.0312253775774582 6.88188585319321 11.8317881495319 -0.418829411554479 0.0715778235038319 AT5G59480_at 6.30858652252857 6.57727281921237 7.0745183617648 7.23364283153054 7.03141997958202 6.74554182074464 8.58261972450556 8.34268213496042 6.61431728397474 6.6866693640807 8.38764220784029 9.11813364229752 7.94955450576929 7.76636921184914 8.31126401790943 7.71749343804605 7.68613520224004 8.0271259689294 6.39193532576685 0.214289216244608 0.209203390431154 0.208542868100823 0.214103897137487 0.203349389102769 0.208047572506161 0.20446522319111 0.212867005316024 0.224851253097252 0.203298278693456 0.209036249699341 0.203221353541667 0.203221353541667 0.213003204615929 0.203221353541667 0.203221353541667 0.210312918032891 0.216841950176772 0.221108643185669 5 5|0 -|/ 23996847 23997672 23997318.8 23996616 23998816 - gene protein_coding_gene TRUE TRUE AT5G59480.1|AT5G59480.2 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G02230.2); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85628.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Pyrimidine 5-nucleotidase; (InterPro:IPR010237); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834)|similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G02230.2); similar to HAD-superfamily hydrolase subfamily IA, variant 3 [Medicago truncatula] (GB:ABE82011.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85628.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Pyrimidine 5-nucleotidase; (InterPro:IPR010237); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.445491216483172 -5.01567559110994 0.000839948390531347 0.0312253775774582 6.88058274067512 14.5794215738374 -0.445491216483172 0.0842136861036342 AT5G53500_at 5.49736775704754 5.33034525220613 5.53545934769462 5.49193351451913 7.34295123186909 7.02572136008771 7.29688692725126 7.02785500828632 6.77964446624353 6.2930171203555 8.02246797169477 7.75428056348895 8.07250634211286 7.97806693167108 7.16868533506808 7.20318083597822 6.86161025420851 7.533647846804 6.15496108325301 0.205786736456001 0.213870416552255 0.211818826092064 0.207315715701762 0.205343313035318 0.220404272167529 0.204414977451066 0.202926648880898 0.208551169697579 0.202061698280633 0.205751639485386 0.20735236681317 0.200285683404897 0.215889780026651 0.203706538052711 0.200285683404897 0.205932659745025 0.206243351284030 0.203571870512823 5 5 - 21743395 21744010 21743627.818 21742667 21746526 - gene protein_coding_gene TRUE TRUE AT5G53500.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G24320.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE94388.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.431722632882824 -5.01412279214885 0.000841663233980785 0.0312253775774582 6.87880067680177 13.3103217082431 -0.431722632882824 0.077933027017951 AT5G41520_at 10.8534250429103 10.8485384657300 10.9864294483353 10.8526892951465 11.1076085497807 11.0529861302484 10.6082223338963 10.7420451107331 10.9984425444152 10.7823772870713 11.118787023358 11.3268738731301 11.0481152183314 11.0801504203826 11.4646320419420 10.8984711216389 10.8039923941301 11.0346097210237 10.8611796957204 0.0761797201865525 0.0737702997662735 0.0774271062297864 0.0793488360022516 0.0739636219727085 0.0779943686129317 0.0755416187483764 0.0752828509872343 0.0809384559345014 0.075313707505166 0.0737702997662735 0.0749663315442014 0.0737702997662735 0.0778123201076835 0.0792122402097395 0.0742073730359609 0.0805351751175876 0.0745324763795105 0.0771472261699501 5 5 - 16626605 16627659 16627168.909 16626381 16627920 - gene protein_coding_gene TRUE TRUE AT5G41520.1|AT5G41520.2 40S ribosomal protein S10 (RPS10B) Identical to 40S ribosomal protein S10-2 (RPS10B) [Arabidopsis Thaliana] (GB:Q9FFS8); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55398.1); contains InterPro domain Plectin/S10, N-terminal; (InterPro:IPR005326); contains InterPro domain Fe-only hydrogenase, small subunit; (InterPro:IPR008953)|Identical to 40S ribosomal protein S10-2 (RPS10B) [Arabidopsis Thaliana] (GB:Q9FFS8); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55361.1); contains InterPro domain Plectin/S10, N-terminal; (InterPro:IPR005326) -0.358601964336009 -5.01155868051046 0.000844503235303211 0.0312253775774582 6.87585704101121 21.8703032900031 -0.358601964336009 0.0340888923962685 AT5G42540_at 7.29494824331578 7.74267820624832 7.91341786775101 8.05358800718484 8.38024034764023 7.48484272373285 7.39341805233891 7.11253060559533 7.64804650272704 6.90509438521639 7.28628836933952 7.56060198059057 7.45463986890979 7.52390316755313 6.89476658197615 7.476330378886 7.23258161565952 7.46542768443464 7.62428348297368 0.204088326323500 0.197619740453695 0.194788157595364 0.194381308078375 0.193570045927927 0.204060769677730 0.196649349111183 0.200334878030367 0.205246041236112 0.198413758853943 0.190653441179960 0.192643530118929 0.193945859197792 0.207942339241477 0.192388922319092 0.196671563493732 0.197401813701771 0.189667539685097 0.189667539685097 5 5 + 17031244 17031729 17031406.182 17024641 17032029 + gene protein_coding_gene TRUE TRUE AT5G42540.1 XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ nucleic acid binding Encodes a putative exoribonuclease. similar to AIN1 (ACC INSENSITIVE 1), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G54490.1); similar to XRN3 (5'-3' exoribonuclease 3), 5'-3' exoribonuclease [Arabidopsis thaliana] (TAIR:AT1G75660.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to PREDICTED: similar to 5-3 exoribonuclease 2 [Bos taurus] (GB:XP_595586.2); similar to Zinc finger, CCHC-type; Putative 5-3 exonuclease [Medicago truncatula] (GB:ABE84268.1); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.708179792748431 -5.011367729622 0.000844715146814503 0.0312253775774582 6.87563777975318 15.0491041298381 -0.708179792748431 0.181562669813721 AT5G11650_at 7.00080517425911 7.58368619300483 8.0777147370214 8.42595275262079 8.21752109431016 7.93281697731787 8.04004995879885 8.27063119818732 7.21812449433603 7.19540931962736 7.37508812939093 7.3762639433212 7.82290127579512 7.99800729094647 6.27289095100388 8.27663270677633 7.76748247759708 7.46392910334005 7.17779505253462 0.179285981250981 0.179620673450504 0.182397773287748 0.194668014553483 0.178049463514526 0.182781165783444 0.178645360905351 0.185212550906451 0.197672411025726 0.178515514518404 0.176215579013240 0.176409636423834 0.17367473442781 0.180869928086655 0.22315922202293 0.172809485883484 0.194758440578186 0.181222561745832 0.187240425952505 5 5|0 +|/ 3746040 3746789 3746493.6 3744981 3747126 + gene protein_coding_gene TRUE TRUE AT5G11650.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G73480.1); similar to Os09g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063095.1); similar to Os01g0199400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042310.1); similar to putative monoglyceride lipase [Oryza sativa (japonica cultivar-group)] (GB:BAD26447.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.568933052081301 -5.00895363247112 0.000847399212165351 0.0312683575321397 6.8728652069803 15.3142768141587 -0.568933052081301 0.133515249662518 AT5G37130_at 5.47413892034146 5.1977155740551 6.00807638756448 5.86124563793868 5.77602723940051 5.55711383153262 4.93713387643488 4.96829694140932 5.27071314525505 5.59199733277966 5.93801262570845 5.97074711737987 5.82270517139471 5.98466190332652 5.98211149836777 6.06958482948003 6.08406043009352 5.71882917692112 5.43957710961564 0.176847136634686 0.174929288552723 0.179592034982660 0.176981887031753 0.172835763136011 0.176222526126731 0.18474699403449 0.171184189931998 0.182123976699128 0.172316634176404 0.179562152880865 0.174855362004966 0.171116434436566 0.171116434436566 0.180124023618662 0.174881379043633 0.172858967895229 0.177415437966521 0.171116434436566 5 5|0 +|/ 14703032 14703656 14703307.625 14698608 14703914 + gene protein_coding_gene TRUE TRUE AT5G37130.1 similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT5G17270.1); similar to Os07g0455100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059558.1); similar to tetratricopeptide repeat (TPR)-containing protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC65407.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105) -0.407183663942251 -5.00028328924908 0.000857115599713053 0.0315207447350943 6.86289879683893 11.1626860294017 -0.407183663942251 0.0663193141716438 AT5G55540_at 5.83523248866547 5.56026300313217 5.21590131993146 5.57564825799218 6.55686088068181 6.58331885268409 5.9844906881024 5.85313740507689 6.1210893596181 5.8535746045783 6.76332124248884 7.47138319613064 6.92563172392307 7.02524841882073 7.21544031402879 6.61847951907965 6.74891714198066 6.97718673682417 5.83145075279215 0.192217613857655 0.178183779253706 0.186116945488674 0.191818112273760 0.178102330814763 0.180098969593088 0.186371074464974 0.176564396496213 0.181761917432842 0.177812840480632 0.179699600193073 0.179772447203372 0.178010695894392 0.182255779273702 0.188809390759513 0.180785837482102 0.185667531142878 0.183496015105285 0.198007285227487 5 5 - 22513548 22514064 22513813.545 22513422 22517769 - gene protein_coding_gene TRUE TRUE AT5G55540.1 TRN1 (LOPPED 1, TORNADO 1) Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. similar to EMB2004 (EMBRYO DEFECTIVE 2004), protein binding [Arabidopsis thaliana] (TAIR:AT1G10510.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87265.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor type; (InterPro:IPR007091) -0.436400760311228 -4.97468003692698 0.000886518909120563 0.0322486667210388 6.83338988179758 12.3473929165279 -0.436400760311228 0.0817176851686442 AT5G01390_at 5.8750651073381 5.80997525093284 6.2852285177425 6.55009133134656 6.64437630281715 6.57776534415783 5.71643879099746 5.7231828722433 5.69755174991261 5.4256055258333 6.2264550512847 6.23076790641006 6.18159994835205 6.10376518684128 6.37441533153672 6.46191085336938 6.31128852393953 6.69476471783274 6.07888407969227 0.163536984281961 0.172194863264649 0.166764538201840 0.164362757150059 0.169015416961790 0.179887879113201 0.163624007022033 0.165804109533769 0.169655880827754 0.163346126404984 0.161366817674380 0.165215379127588 0.162735936971480 0.16409138284651 0.164551093777067 0.167625860675262 0.172988096316146 0.171523037133558 0.160357215175723 5 5|0 -|/ 160539 161665 160890 160263 162298 - gene protein_coding_gene TRUE TRUE AT5G01390.1 DNAJ heat shock protein, putative similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT3G08910.1); similar to DnaJ-like protein [Nicotiana tabacum] (GB:AAF05720.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.374310182670343 -4.96639579166134 0.000896265182592013 0.0324882018800022 6.82381681340608 12.1763328022429 -0.374310182670343 0.0486007938798479 AT5G20290_at 11.8807599608249 12.0075515995800 11.9897032456223 11.9529664174288 12.1831069791407 11.7007725141373 11.9436256351982 12.1196718782289 11.7194617931428 11.7823048724845 12.0199404791477 12.1446633649279 11.9233013391020 11.8360365827499 12.3314430130161 11.6259956705850 11.3954593069519 11.8110047836909 11.7494386279447 0.0670488751874849 0.0653180663646881 0.0659113123091783 0.0644433552395974 0.0652839283961433 0.0761284115557029 0.0640563582652259 0.0659881808218869 0.0743699262637313 0.0651000082327469 0.0641318064508163 0.0638801377837856 0.0646013937586543 0.0671327568787774 0.0638801377837856 0.065023498874897 0.0704824894172844 0.0683516646313429 0.0656651272146869 5 5|0 -|/ 6851868 6852454 6852118.7 6851454 6853066 - gene protein_coding_gene TRUE TRUE AT5G20290.1 40S ribosomal protein S8 (RPS8A) Identical to 40S ribosomal protein S8-1 (RPS8A) [Arabidopsis Thaliana] (GB:Q93VG5); similar to 40S ribosomal protein S8 (RPS8B) [Arabidopsis thaliana] (TAIR:AT5G59240.1); similar to Os04g0349500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052526.1); similar to 40S ribosomal protein S8 (GB:Q08069); contains InterPro domain Ribosomal protein S8E; (InterPro:IPR001047) -0.457267169766297 -4.95748494374982 0.00090687831353202 0.0328150363247348 6.81350595432436 23.7904609447929 -0.457267169766297 0.0917458289132114 AT5G16780_at 7.32547711836452 7.4059435556656 7.78463382014778 7.82924294459594 8.44952652505076 8.12163278087449 7.01243193124706 6.94025696895352 7.32871984935841 7.42710662291527 7.37284601918828 7.85485803450111 7.35340359283619 7.73550458725626 7.11472769846404 7.83355645920757 7.67713655206633 7.65653336986883 7.06447093701693 0.160703893293594 0.161452653623962 0.162262122674409 0.163452650267785 0.165121409631856 0.163618805768674 0.170357409349693 0.165488439652382 0.168912081340772 0.16248537372038 0.16427026831647 0.159635829227749 0.164171334338128 0.159635829227749 0.17714046310284 0.159635829227749 0.169853862591878 0.164737757393824 0.163570458718456 5 5|0 -|/ 5517807 5518682 5518247.9 5517493 5522261 - gene protein_coding_gene TRUE TRUE AT5G16780.1 SART-1 family protein Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14700.1); similar to SART-1 protein [Medicago truncatula] (GB:ABE84261.1); similar to SART-1 protein [Medicago truncatula] (GB:ABE88274.1); contains InterPro domain SART-1 protein; (InterPro:IPR005011) -0.391647757670266 -4.94523574837374 0.000921690200251178 0.0332339775922971 6.79930906124148 15.032769835081 -0.391647757670266 0.0602439933237569 AT5G36940_at 7.12759390791796 7.12026136569752 8.00175626653514 7.83861222970445 8.61829128140976 8.05526711552085 8.11885771784596 7.73796758394563 8.04730757771248 7.67336439901235 8.20199828935418 7.77287958731818 8.44649770027568 8.57320192528481 7.50978694074921 8.27819211180653 7.97443979740694 8.07936417637405 7.97794872227715 0.186050015160165 0.1799152382834 0.191025217871693 0.181881381459897 0.193671637747107 0.193477434054147 0.182612239881756 0.184347582006132 0.184559104377814 0.182020942939282 0.177152781593384 0.179245594502838 0.186664646812786 0.181974997595526 0.180587780534101 0.184138142743136 0.194459016902728 0.185571127091168 0.180917836748442 5 5|0 +|/ 14610372 14611339 14610965.556 14607396 14611614 + gene protein_coding_gene TRUE TRUE AT5G36940.1 CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At5g36940) similar to CAT4 (CATIONIC AMINO ACID TRANSPORTER 4), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT3G03720.1); similar to CAT2 (CATIONIC AMINO ACID TRANSPORTER 2), amino acid transporter [Arabidopsis thaliana] (TAIR:AT1G58030.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABD28534.1); similar to Amino acid permease-associated re (GB:ABE92408.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99422.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -0.526177438829674 -4.92553622315026 0.000946063202143303 0.0339935350686076 6.77642086467566 15.8293685831081 -0.526177438829674 0.120982817270343 AT5G22400_at 4.69956074909313 4.78180545359467 4.90579925643045 5.16402217977828 5.20239071126419 5.10160750408753 5.19821806353606 5.11898370259755 4.66490036342786 4.6402862737747 6.04648602480318 5.42304073441174 5.72999001124478 5.66438974834762 5.87538810550554 5.41292974623472 5.3897640349666 5.60527826715862 4.67602277423171 0.222178091823336 0.217771759401655 0.215572105036113 0.210427246379945 0.217661014017027 0.207851336450745 0.214695198998918 0.213051066292046 0.228487872087378 0.208936325315428 0.2171437268938 0.213025885091880 0.211894146157253 0.214918233483677 0.207851336450745 0.207851336450745 0.232866385692606 0.207851336450745 0.213127557566018 5 5 - 7423083 7423709 7423374.545 7422719 7425470 - gene protein_coding_gene TRUE TRUE AT5G22400.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT3G11490.1); similar to RhoGAP1 [Nicotiana tabacum] (GB:ABG85154.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.375330144176741 -4.91380081189306 0.000960913590799875 0.0343469912682291 6.76275287100564 10.1734541881622 -0.375330144176741 0.0518813750142667 AT5G57290_at 8.62369425522923 8.60863794116962 8.9342861492502 8.62686097777877 8.68073201758436 8.44010864442842 8.47062522430685 8.77586295191556 8.27739203746461 8.36531917185442 9.08300625462596 9.46470244485593 8.75819499061072 8.85620970602878 9.66715036382655 8.76702276290132 8.64152002875141 8.62103668647165 8.14019067121757 0.143650429006642 0.142447756717405 0.135241726138831 0.128899549379930 0.131509447707997 0.146497912685782 0.135210665336694 0.135330434899282 0.148067951377559 0.136602092661240 0.130660399714186 0.130644676268855 0.132694507349468 0.128600942802618 0.142806672301549 0.132643148739582 0.135808628159153 0.136696953784996 0.138210067393715 5 5 - 23224283 23225037 23224678.727 23224028 23225152 - gene protein_coding_gene TRUE TRUE AT5G57290.1 60S acidic ribosomal protein P3 (RPP3B) Identical to 60S acidic ribosomal protein P3-2 (RPP3B) [Arabidopsis Thaliana] (GB:Q9LVC9); similar to 60S acidic ribosomal protein P3 (RPP3A) [Arabidopsis thaliana] (TAIR:AT4G25890.1); similar to Os06g0701400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058484.1); similar to 60S acidic ribosomal protein P3 [Lactuca saligna] (GB:AAR22559.1); similar to 60S acidic ribosomal protein P3 [Lactuca saligna] (GB:AAR22560.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.437909527779553 -4.89146454515898 0.000989880309144432 0.0351379426768974 6.73667012223253 17.2667623693435 -0.437909527779553 0.0857985767593288 AT5G63480_at 4.86145173570377 5.10375570154735 5.24843550953589 4.66635266131355 6.57120028839351 6.19555629094125 5.30268779816866 5.17137381890424 5.94307959513013 5.13031055618304 6.03732888834118 5.97227600772445 5.98091079626973 5.93796292079862 5.08481674784805 5.42458394784281 5.72344835188574 5.37817232361749 5.05507749689644 0.267623134858878 0.263341910913802 0.271014819060535 0.273538352235998 0.263179327192854 0.263832126647595 0.265012857894510 0.271815697704214 0.269903655993753 0.270304819838202 0.268953414021179 0.26110210711207 0.267883648651683 0.266868727346894 0.270254128244708 0.26110210711207 0.296290560598809 0.272992388741901 0.270107107435729 5 5 + 25434551 25435673 25434873 25434491 25435861 + gene protein_coding_gene TRUE TRUE AT5G63480.1 similar to OSJNBa0053B21.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE05534.2); similar to OSIGBa0096P03.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66428.1); contains InterPro domain Apolipophorin III-like; (InterPro:IPR011000) -0.541557093486961 -4.87301435353003 0.00101452009942185 0.0358886177369872 6.71505785035903 10.9243984159523 -0.541557093486961 0.129025387343085 AT5G54250_at 6.62458879974193 6.83383817903195 7.48051445943309 7.57893944265116 7.86290168168215 7.51313942750704 7.25722380599005 7.49008926945219 6.98396249383183 6.9269660377055 7.5827344365337 7.26758423968944 7.44249813963713 7.5566138799328 7.34121314905296 7.53929521259176 7.67531385829361 7.42968060209125 6.70700650478759 0.165673003488884 0.167697187704595 0.186247639657702 0.173460413465368 0.164507473462705 0.173290380965956 0.161786819892892 0.161152423047081 0.177606237844471 0.164640514602967 0.165521318670056 0.165032297924535 0.16240112760646 0.170124008192217 0.172067729550179 0.159457638131163 0.165404227683155 0.166036053623185 0.174282855188529 5 5 - 22042942 22043909 22043383.273 22042512 22047286 - gene protein_coding_gene TRUE TRUE AT5G54250.1|AT5G54250.2 ATCNGC4 (DEFENSE, NO DEATH 2); calmodulin binding / cation channel/ cyclic nucleotide binding member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. Identical to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide- and calmodulin-regulated ion channel 4) (AtHLM1) (CNGC4) [Arabidopsis Thaliana] (GB:Q94AS9;GB:Q9XFS2); similar to DND1 (DEFENSE NO DEATH 1), calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G15410.1); similar to IQ calmodulin-binding re (GB:ABE84248.1); similar to cyclic nucleotide-gated ion channel 4 [Hordeum vulgare subsp. vulgare] (GB:AAY58304.1); similar to putative cyclic nucleotide and calmodulin-regulated ion channel [Oryza sativa (japonica cultivar-group)] (GB:BAD53284.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595) -0.429778861550501 -4.86809963895649 0.00102119491302155 0.0360626690671712 6.7092905396394 14.5061602341043 -0.429778861550501 0.0830000077434596 AT5G15850_at 8.239329418368 8.11848863478719 9.6016157194996 9.4023965851773 9.47588064682763 9.60996410402464 9.12097410915998 9.09760942013224 9.06727436204161 9.09327109222315 8.75966122880256 8.48070384659063 8.97268456417968 8.86211462191774 8.47926135070601 9.51093999205442 9.73342977594383 9.04907307116091 8.98573759400836 0.088571824464565 0.0876996801493593 0.0837053727101225 0.0873185916680854 0.0866143577381017 0.0874979131274977 0.086480207071968 0.0852038222764834 0.094666042091083 0.0861400734182416 0.0872956358225143 0.0822961776848832 0.0869886747474022 0.0856700212945342 0.0849046281650352 0.0853797846344472 0.091146436466456 0.0864027347766118 0.087805061649953 5 5|0 -|/ 5176347 5176975 5176666 5176094 5177900 - gene protein_coding_gene TRUE TRUE AT5G15850.1 COL1 (CONSTANS-LIKE 1); transcription factor/ zinc ion binding Homologous to the flowering-time gene CONSTANS. Identical to Zinc finger protein CONSTANS-LIKE 1 (COL1) [Arabidopsis Thaliana] (GB:O50055); similar to CO (CONSTANS), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15840.1); similar to COL1 protein [Brassica nigra] (GB:AAN09808.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.362698627085697 -4.84861250206627 0.00104813221867359 0.0367612832733206 6.68638019224942 18.0981546160023 -0.362698627085697 0.0466975242307436 AT5G47870_at 6.3761461463934 6.31533196961723 7.23770539868843 6.93305955281837 7.25493359784018 6.91951404575349 6.71103402560537 6.69102384438483 7.3321689606693 6.90039647676776 7.80280623521344 7.54611447065022 7.72176495074351 7.74973114249751 7.7070430989465 7.98151839316033 7.41776911605716 7.8216968124847 6.97180655110083 0.193105372372429 0.19145250793036 0.197998278292254 0.203786358597418 0.193371487874040 0.197831250274436 0.197639040143366 0.201813065342417 0.197275668531884 0.196916897794040 0.188029123178090 0.196891935725828 0.190163159508401 0.19015343370059 0.192405491517288 0.188491069204603 0.196269241346790 0.189947036827525 0.193155869845198 5 5|0 -|/ 19401785 19402992 19402480.8 19401594 19403095 - gene protein_coding_gene TRUE TRUE AT5G47870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71310.1); similar to Os03g0851500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051915.1); similar to Os09g0512800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063645.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34413.1) -0.419557604091944 -4.84273843466303 0.00105640196915558 0.0369882095405966 6.67946090381638 14.1981833344619 -0.419557604091944 0.0791929111532477 AT5G65180_at 5.19687907148991 5.32147715870633 5.87761825514917 5.83620699754055 6.37810921107648 6.25302802116822 5.39142543803185 5.35375334875032 5.10467498414245 5.10264924715499 5.68632049582833 5.51768108452658 5.78897421483823 5.48384090383654 6.07549897264674 5.57168053562891 5.96294111810126 5.58679750517082 5.34718959258103 0.189194455804974 0.190763486930885 0.201552636612616 0.190140643017674 0.195524468129152 0.1969377248571 0.188952437397961 0.19784404816319 0.192010227934184 0.195316357481421 0.193709906985811 0.19337095845232 0.196670696027313 0.196756001986472 0.188498298675990 0.191877121658284 0.192228131630116 0.193819032027184 0.193162583991284 5 5 + 26064246 26065002 26064749.364 26062587 26065257 + gene protein_coding_gene TRUE TRUE AT5G65180.1|AT5G65180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10060.1); similar to 4D11_9 [Brassica rapa subsp. pekinensis] (GB:AAZ67523.1); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072); contains InterPro domain Protein of unknown function DUF618; (InterPro:IPR006903)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10060.1); similar to 4D11_9 [Brassica rapa subsp. pekinensis] (GB:AAZ67523.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.343384949474595 -4.82864978303361 0.00107652544381538 0.0375648113834583 6.66284013241712 11.1480895852966 -0.343384949474595 0.0320520718383349 AT5G44680_at 9.26821436327106 9.17833484170604 8.93826477401228 8.87956628683221 10.0352888824179 9.58850677267044 9.69071866165406 9.34476286264358 9.93146786526034 9.4188456981294 10.7881087714847 10.6461504428828 10.4940374423778 10.6111516046457 10.436997078999 10.3772391137613 9.431191672085 10.0518360231351 10.3165484832476 0.0983067886973697 0.0973252408288445 0.102608027159272 0.101441106558264 0.0963173924020002 0.099625120646095 0.0973483014447778 0.098292507820044 0.103512924363896 0.0966755601343843 0.0966845932802527 0.0945639155470609 0.0941092114795541 0.0941092114795541 0.0980242467326252 0.0941092114795541 0.101147617787054 0.106370057066918 0.0984323755343784 5 5 - 18041689 18042481 18041985.455 18041442 18043218 - gene protein_coding_gene TRUE TRUE AT5G44680.1 methyladenine glycosylase family protein similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT3G12710.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine glycosylase; (InterPro:IPR005019); contains InterPro domain DNA glycosylase; (InterPro:IPR011257) -0.463052780370922 -4.82671296216951 0.00107932413889284 0.0375986357383283 6.6605524290217 19.4872286977595 -0.463052780370922 0.0995362993409655 AT5G50240_at 5.6604382948995 5.29357321567329 6.87018965417924 6.23793720843368 6.18931635843616 6.48996099660736 6.86461787093687 6.73899902071512 5.63189233451787 5.9169527070278 5.34362582781286 5.87403203053892 6.15843292048283 6.59946084478999 6.18170841806449 6.91751688889599 6.61790152678111 6.73017333178815 5.41848149685992 0.23852119055394 0.238572552797560 0.231495357138545 0.254307915595223 0.259521074379071 0.23742384818459 0.257351776614916 0.235712881871111 0.246400224618132 0.237520980467396 0.238215332206666 0.231495357138545 0.233040640173854 0.241239268539507 0.238145041391282 0.231495357138545 0.252396447680090 0.231495357138545 0.232117879743772 5 5|0 +|/ 20468870 20469521 20469278.167 20468454 20469795 + gene protein_coding_gene TRUE TRUE AT5G50240.1|AT5G50240.2 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase|PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced. similar to PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1), protein-L-isoaspartate (D-aspartate) O-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G48330.2); similar to Protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) (GB:Q43209); similar to Os08g0557000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062480.1); similar to OSJNBb0011N17.10 [Oryza sativa (japonica cultivar-group)] (GB:CAD41093.2); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Protein-L-isoaspartate(D-aspartate) O-methyltransferase; (InterPro:IPR000682) -0.560988265112218 -4.82215145059 0.00108594661827310 0.0377653231129783 6.65516187775016 12.2724450707082 -0.560988265112218 0.138497847157595 AT5G02500_at 12.9560690723385 13.1203280414520 13.1599301238781 13.2408445245620 13.2301385674023 13.3725981254992 13.0467280883075 13.3227227919516 13.4623533125247 13.2876454318668 13.7175396416449 13.2778266860356 13.5003793515549 13.4084466496976 13.1739255677916 13.1948553332404 13.1210246492194 13.3124098312204 13.5103127278466 0.0496823445355929 0.0480075365614819 0.0480075365614819 0.048553563541611 0.0496067775249197 0.0539695399861312 0.0501747513015873 0.0494871971716474 0.0528025751231953 0.0487948298822707 0.0500346994955259 0.0484290284803744 0.0483682904981921 0.0493459311204524 0.0491568035512274 0.048051091984204 0.0541416707489308 0.0496916455641048 0.0480340637898234 5 5 - 554066 554598 554288.182 553743 556439 - gene protein_coding_gene TRUE TRUE AT5G02500.1 HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding encodes a member of heat shock protein 70 family. Identical to Heat shock cognate 70 kDa protein 1 (Hsc70.1) (HSC70-1) [Arabidopsis Thaliana] (GB:P22953;GB:Q9LZ52); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G02490.1); similar to heat shock protein 70-3 [Nicotiana tabacum] (GB:AAR17080.1); similar to heat shock cognate protein 70 [Thellun (GB:AAS09825.1); similar to heat shock cognate protein HSC70 [Brassica napus] (GB:AAB88009.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.385320112171312 -4.81826196476064 0.00109162813462874 0.0378987793160277 6.65056254403465 26.5603723108639 -0.385320112171312 0.0623947747546762 AT5G58130_at 6.2670106731281 6.0441415105565 6.66149199242396 6.3473193240961 6.80368936096589 6.7197904142655 5.58081086988947 5.86738086531357 6.1674662078678 5.76572150120319 6.3808572019249 6.99020150605781 6.62491726189093 6.5205502360591 6.76414863566127 6.66708115668374 6.12247337282088 6.71518938744011 6.24169909802442 0.20065613138979 0.191092579683538 0.195429877607954 0.205875563847583 0.192129149060668 0.211523107127839 0.191803053493449 0.191854806189075 0.208326668900798 0.191092579683538 0.193707645513129 0.194448290906191 0.193755276413307 0.203663240079830 0.198481261339035 0.195053852248955 0.221787678306121 0.200177643327806 0.196676689829970 5 5 - 23538500 23538854 23538682.909 23538275 23541023 - gene protein_coding_gene TRUE TRUE AT5G58130.1 RNA recognition motif (RRM)-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Os02g0138200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045836.1); similar to marker Xucw84 [Triticum tur (GB:ABI15899.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.428019912173675 -4.81586752842848 0.00109514174761658 0.0379566477937445 6.64772976391098 12.6146908499211 -0.428019912173675 0.084342895649477 AT5G12400_at 5.41636745288352 5.16158459497133 5.89717057552138 5.91882106199602 6.3070447326365 5.9030461046304 5.13830629497862 5.07815457228998 5.43048737725411 5.13503394500067 5.3917643997341 5.77515846565062 5.31942654875095 5.79248369950609 5.52697891367503 5.80389148660918 5.37791405631673 5.82238283342128 5.29952701336027 0.239073703203888 0.233699107865910 0.245755399923508 0.235464750464893 0.246820769893000 0.243607194307741 0.241922356520656 0.233857326167924 0.256801654891530 0.251929866936032 0.241847599838195 0.246338240065514 0.238726413502330 0.23880698071777 0.237488226664854 0.241862585369163 0.242202597766448 0.247830165548916 0.244185171531935 5 5 + 4020319 4020840 4020632.364 4013814 4020910 + gene protein_coding_gene TRUE TRUE AT5G12400.1 PHD finger transcription factor, putative similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G22760.1); similar to PHD finger transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31424.1); similar to Os07g0661500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060538.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DDT; (InterPro:IPR004022); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.425538172596159 -4.81065225780688 0.00110283704856446 0.0381590110513681 6.64155618822267 11.0473616715700 -0.425538172596159 0.0833929882577304 AT5G58120_at 7.08004438195661 6.9085327480036 8.43844057317592 8.27291945208404 7.51190026166331 7.66288412493438 7.1917164704637 6.30321872585279 5.86832835130835 7.0650925505342 5.22076026248559 5.81845225338235 6.13727007385696 6.78112614201005 5.42625880967575 7.45591675470753 7.47410867115048 6.06041571144569 6.76643334416057 0.223987523306685 0.210977401841818 0.220505646357201 0.213821008603304 0.210977401841818 0.222244883807015 0.217342205565494 0.215071713431919 0.247943099259801 0.212989779090587 0.216455763348874 0.214689081648679 0.214948798556902 0.219061579985897 0.220130393750259 0.214009754389105 0.224553736150796 0.218069148681890 0.217631617803754 5 5 + 23537578 23537964 23537756.273 23534718 23538293 + gene protein_coding_gene TRUE TRUE AT5G58120.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63730.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G63750.3); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.620643062442156 -4.79840731144685 0.00112113550111082 0.0386247795919064 6.6270420682996 13.8529104256870 -0.620643062442156 0.161325364247486 AT5G16060_at 6.74540961563188 7.08832660032488 7.7326911691375 7.89420744860245 7.20206029311821 7.22076308225014 6.85024543196962 7.21139310654974 6.2597978550338 6.58956267527449 7.22538548770526 7.32724658270934 6.69873523168487 7.50840443464674 7.732382610978 7.18265644220746 6.9965508646768 7.07877779857651 6.8899429636957 0.167248754444713 0.167512365091091 0.178930802141063 0.166435734947884 0.173273010912671 0.167746802827830 0.168403539655598 0.169479153110597 0.180778730217458 0.180576432117184 0.168196979240982 0.168433666765613 0.174928160770956 0.170937057231394 0.168049263174893 0.172068136537628 0.178675889504454 0.177123743409064 0.167914980761864 5 5|0 +|/ 5246167 5247188 5246636.111 5246125 5247434 + gene protein_coding_gene TRUE TRUE AT5G16060.1 similar to hypothetical protein [Cleome spinosa] (GB:ABD96913.1) -0.439477730487208 -4.79070494962646 0.00113281356964755 0.0389340396770302 6.61789856871725 14.1424047249394 -0.439477730487208 0.0906609920933064 AT5G13980_at 8.48622853054187 8.44931214063056 8.66885764941017 8.49368070551897 9.0818636321923 8.45129864670534 8.53071802247534 8.50218260645045 8.49335917165952 8.87195987973099 9.37491123910957 9.6204160265797 9.18762496726555 8.9883601098567 9.4447835477596 9.23479025327531 8.77911332566998 9.3261826468484 9.06779419258337 0.123220374760094 0.115663883559959 0.121721754922921 0.134223935762247 0.119562106850952 0.124326748424041 0.120002721897839 0.132809218882430 0.144566730146516 0.124904246014794 0.120351018247808 0.122978686629107 0.11920948140862 0.121126002670157 0.121872969096693 0.115663883559959 0.122226715740431 0.127514849241141 0.125380330140481 5 0|5 /|+ 4513522 4514299 4513906.333 4508498 4514668 + gene protein_coding_gene TRUE TRUE AT5G13980.1|AT5G13980.2|AT5G13980.3 glycosyl hydrolase family 38 protein|alpha-mannosidase similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT3G26720.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G66150.1); similar to Glycosyl hydrolases family 38 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22500.1); similar to Glycosyl hydrolases family 38 C-terminal domain, putative [Medicago truncatula] (GB:ABE88173.1); similar to glycosyl hydrolase family 38 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65906.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Glycosyl hydrolases 38, C-terminal; (InterPro:IPR011682); contains InterPro domain Glycoside hydrolase, family 38; (InterPro:IPR000602) -0.492950162620039 -4.78860896966472 0.00113601412636864 0.0389788586188079 6.61540858275486 17.6107979980091 -0.492950162620039 0.113542357444280 AT5G14660_at 8.69113505739376 8.61977769409139 8.6899546971456 8.84529893949678 9.15345441512189 8.80248629876458 9.26936327479029 9.4121555749523 9.0507623295269 8.86151400417275 9.57947825457947 9.97750006878762 9.7208247764332 9.86488186504313 9.79237162543685 9.9543687215071 9.48811766541781 9.7363082854255 8.86729543522252 0.120310308936880 0.116971165960485 0.120021338768453 0.117990296705005 0.130400717570671 0.117762020216181 0.115293874147984 0.118462247996986 0.131014587759737 0.113220109567137 0.116822547494857 0.114905070385154 0.117855766433360 0.114926073885031 0.120411386298083 0.113733622825776 0.123694290010713 0.122760826753211 0.11838875587383 5 5|0 -|/ 4727182 4728311 4727894.714 4726644 4728749 - gene protein_coding_gene TRUE TRUE AT5G14660.1|AT5G14660.2 PDF1B (PEPTIDE DEFORMYLASE 1B); peptide deformylase encodes a peptide deformylase-like protein Identical to Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) (PDF1B) [Arabidopsis Thaliana] (GB:Q9FUZ2;GB:Q8LEH0;GB:Q949U8;GB:Q9LYJ4); similar to PDF1A (PEPTIDE DEFORMYLASE 1A), peptide deformylase [Arabidopsis thaliana] (TAIR:AT1G15390.1); similar to Peptide deformylase, chloroplast precursor (PDF) (Polypeptide deformylase) (GB:Q9FV54); contains InterPro domain Formylmethionine deformylase; (InterPro:IPR000181) -0.400258520791552 -4.78613665379306 0.00113980191055589 0.0390436435013752 6.61247050409734 18.2808309093710 -0.400258520791552 0.0719358006616183 AT5G49510_at 7.85389114505664 7.94916173185653 8.4205513982675 8.57505192540372 8.78573345429424 8.13729810580975 8.28031053899413 8.2879503215651 7.43342492459885 7.45667662581758 7.849088439751 7.85961186630169 8.04312346241834 8.07799109142235 8.01532793298626 8.03237284970958 7.64958789816386 7.80207060067579 7.49460979621911 0.209963719904233 0.201296400414413 0.201560925721372 0.208466023251576 0.205423970149066 0.211371819031347 0.199146087669393 0.199585670651379 0.209566182470354 0.197672998417632 0.206650061011428 0.196131771701712 0.199675636359130 0.206197505557592 0.196341462992214 0.203325689228075 0.214847026703972 0.211186769008107 0.203581445277957 5 5|0 +|/ 20097959 20099641 20098819 20097840 20100147 + gene protein_coding_gene TRUE TRUE AT5G49510.1|AT5G49510.2 VHL binding protein, putative / prefoldin, putative|protein binding Identical to Probable prefoldin subunit 3 [Arabidopsis Thaliana] (GB:P57741); similar to Vbp1-prov protein [Xenopus laevis] (GB:AAH54252.1); similar to Os12g0562900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067032.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin alpha-like; (InterPro:IPR004127) -0.49816647821932 -4.76748353244235 0.00116882361064308 0.0399711563451439 6.59026797217277 15.9751021859345 -0.49816647821932 0.116535795063323 AT5G03300_at 9.54432437537463 9.64688166262649 9.89443604289215 9.80954754888377 9.46998239618374 9.65047678788661 9.85341184671974 9.96346723475663 9.49434890813073 9.6176114899174 10.3980957352236 10.6440241796963 10.0038170856542 10.1826154697093 10.6545090313061 9.98263707181757 9.90823441513843 10.1800093068681 9.48051550435877 0.100715037930152 0.100715037930152 0.108755115206073 0.100715037930152 0.107983848026834 0.109975536330962 0.107115786538219 0.100715037930152 0.119207886361397 0.107065507855602 0.102983917121733 0.103324415524691 0.101419079282559 0.107603435816833 0.104804471999304 0.108706228847170 0.109796762999213 0.109991226537552 0.104467174745361 5 5|0 +|/ 797921 798970 798457.9 796441 799175 + gene protein_coding_gene TRUE TRUE AT5G03300.1 ADK2 (ADENOSINE KINASE 2); kinase Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion. Identical to Adenosine kinase 2 (EC 2.7.1.20) (AK 2) (Adenosine 5'- phosphotransferase 2) (ADK2) [Arabidopsis Thaliana] (GB:Q9LZG0); similar to ADK1 (ADENOSINE KINASE 1) [Arabidopsis thaliana] (TAIR:AT3G09820.1); similar to adenosine kinase isoform 2S [Nicotiana tabacum] (GB:AAU14833.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Adenosine kinase; (InterPro:IPR001805); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -0.350587614711666 -4.74882955954216 0.00119864644710479 0.0407874328935088 6.5680020454814 19.61660003078 -0.350587614711666 0.0432340522060455 AT5G13770_at 9.99633314936792 10.2147226352626 10.6931756015353 10.7666664071382 11.0002369539982 10.8478091957382 10.8907466757687 10.9487529411235 11.57209936975 11.5186944706940 11.7891986430202 11.7503771391890 11.5919002819799 11.6948898616689 11.6323986310454 12.0381955575478 11.3685679766380 11.6903119158130 11.6819995077879 0.0729422334449597 0.0665221487496673 0.0652673275043811 0.0677278060948299 0.0652875684602424 0.0721422357302267 0.0676661111906637 0.06742497443439 0.0756088209685346 0.0666610283640893 0.067165373619082 0.0652673275043811 0.0652673275043811 0.0652673275043811 0.0684914264889475 0.0652673275043811 0.0767852517835937 0.0690676132571493 0.0652673275043811 5 5 + 4446779 4447231 4447091.273 4445426 4447479 + gene protein_coding_gene TRUE TRUE AT5G13770.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G42310.1); similar to Os01g0852900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044829.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE94700.1); similar to Os04g0583000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053661.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.358161845790818 -4.7473350008857 0.00120107116545523 0.0408023873687688 6.56621539762717 22.3125110034616 -0.358161845790818 0.0488534923161419 AT5G18570_at 6.0378105613036 6.37412923674029 6.09988568379616 6.70541839798206 6.93490713539396 6.45740026061889 6.47928386506797 6.4583345020321 5.64488706204694 6.2318705065471 6.37739571915475 6.83634823534303 6.6394260615676 6.7019960281463 7.59260033997689 7.06329932711785 6.85006002469608 6.3074203891431 6.2944773765707 0.243662188415002 0.236098964216246 0.252312934345212 0.236098964216246 0.251087221300194 0.244806762759207 0.241391414991423 0.238407119822548 0.248030172494735 0.238854889647015 0.240790120006912 0.241572184165308 0.241754355444336 0.247609387626444 0.245853537537914 0.243708259335607 0.245651218969329 0.241660822809672 0.236098964216246 5 5 - 6171737 6172639 6172279.778 6171663 6174835 - gene protein_coding_gene TRUE TRUE AT5G18570.1 GTP1/OBG family protein similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G07615.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83597.1); similar to Os07g0669200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060586.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP1/OBG subdomain; (InterPro:IPR006169) -0.570707014846734 -4.74255308676424 0.0012088648201925 0.0409993832216708 6.56049623985684 12.8699694957159 -0.570707014846734 0.145636764748825 AT5G44510_at 5.09599372064138 4.64124254944892 5.67712976257457 5.56552674708938 5.43861203257627 4.93224914966575 5.0529810895194 4.97213140766325 4.79191785810402 5.03425920573883 5.44047151879081 5.69537754511347 5.57395844020272 5.41415127351040 5.18482411031358 5.5786518879387 5.28718278780931 5.05176886684744 5.07943054560818 0.225210601727406 0.218604872640467 0.229518962426569 0.219381764307632 0.214637682533965 0.219321604406543 0.221875123215356 0.219886619179687 0.235461302858696 0.226658019917020 0.214203409387621 0.220382727298071 0.218167563672512 0.224659061761199 0.226796314973728 0.224767674508913 0.234246429728026 0.223323085168512 0.226816902178662 5 5|0 -|/ 17946914 17948123 17947811.75 17946900 17951415 - gene protein_coding_gene TRUE TRUE AT5G44510.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to RPP1 (RECOGNITION OF PERONOSPORA PARASITICA 1) [Arabidopsis thaliana] (TAIR:AT3G44480.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G14080.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.501081762063985 -4.70955182160507 0.00126416252331840 0.042663632245844 6.5209150765962 10.3579003942138 -0.501081762063985 0.120169475178524 AT5G57990_at 7.5211638815933 7.5608854464901 8.18536876668376 8.37965798875437 8.40484106380607 7.9608992098496 8.07022051665704 7.9143193923396 6.88347868817949 8.0674719206858 8.25394548355488 8.70859761306575 8.11682282585086 7.9562513241508 8.14339808058356 8.34561699478047 7.95976789013397 8.07358223429855 8.04331811241083 0.150956792292131 0.145131954612969 0.147135305036799 0.148465620879274 0.148575135044445 0.152917440954221 0.143525581651278 0.146229550610187 0.168828035407526 0.145547005758342 0.149522368685031 0.148724948831055 0.144418462520807 0.153979164569960 0.147039073211137 0.142640371159451 0.155722179945585 0.151735185910742 0.151579847684057 5 5 - 23487527 23488286 23488035.273 23487240 23491330 - gene protein_coding_gene TRUE TRUE AT5G57990.1 UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT4G31670.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 [Medicago truncatula] (GB:ABE85427.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.424354048235238 -4.67957721587968 0.00131675936240689 0.0443658481471497 6.48479495200258 15.9294215563856 -0.424354048235238 0.0883622662924648 AT5G58140_at 10.5931163303555 10.4562920697542 10.9742813465255 10.9190780307893 11.1928843091134 10.9327425793051 11.3172645399687 11.0330592778705 10.9678039052810 11.1226036884276 11.2260048113640 11.3506726495458 11.3570566095696 11.2620629289513 11.0900557578871 11.4513405467247 11.2613055936631 11.2920760769343 11.1194280355192 0.0689859375579143 0.0671258962580378 0.0704110577076702 0.0699030094553048 0.0692705870277589 0.072407426547808 0.068237935749795 0.0688271849826128 0.0790219369967672 0.0714866065792528 0.0683678329163788 0.0673816700831595 0.0708492906647039 0.0713646795367189 0.0674794128292424 0.0689687025235163 0.0746502562066577 0.0710402077097629 0.0690483527916509 5 5|0 +|/ 23546215 23547193 23546597.5 23541653 23550337 + gene protein_coding_gene TRUE TRUE AT5G58140.1|AT5G58140.2|AT5G58140.3|AT5G58140.4 PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Identical to Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast avoidance protein 1) (Non phototropic hypocotyl 1-like protein 1) (NPH1-like 1) (AtKin7) (PHOT2) [Arabidopsis Thaliana] (GB:P93025;GB:O81204;GB:Q8RWE6); similar to PHOT1 (phototropin 1), kinase [Arabidopsis thaliana] (TAIR:AT3G45780.2); similar to phototropin [Phaseolus vulgaris] (GB:BAD89968.1); similar to nonphototrophic hypocotyl 1b [Oryza sativa (japonica cultivar-group)] (GB:BAA84779.1); similar to phototropin-2 [Lycopersicon esculentum] (GB:ABI48276.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold; (InterPro:IPR013767)|Identical to Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast avoidance protein 1) (Non phototropic hypocotyl 1-like protein 1) (NPH1-like 1) (AtKin7) (PHOT2) [Arabidopsis Thaliana] (GB:P93025;GB:O81204;GB:Q8RWE6); similar to PHOT1 (phototropin 1), kinase [Arabidopsis thaliana] (TAIR:AT3G45780.2); similar to phototropin [Phaseolus vulgaris] (GB:BAD89968.1); similar to nonphototrophic hypocotyl 1b [Oryza sativa (japonica cultivar-group)] (GB:BAA84779.1); similar to phototropin-2 [Lycopersicon esculentum] (GB:ABI48276.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold-3; (InterPro:IPR013655)|Identical to Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast avoidance protein 1) (Non phototropic hypocotyl 1-like protein 1) (NPH1-like 1) (AtKin7) (PHOT2) [Arabidopsis Thaliana] (GB:P93025;GB:O81204;GB:Q8RWE6); similar to PHOT1 (phototropin 1), kinase [Arabidopsis thaliana] (TAIR:AT3G45780.2); similar to phototropin [Phaseolus vulgaris] (GB:BAD89968.1); similar to nonphototrophic hypocotyl 1b [Oryza sativa (japonica cultivar-group)] (GB:BAA84779.1); similar to phototropin-2 [Lycopersicon esculentum] (GB:ABI48276.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold-3; (InterPro:IPR013655) -0.389926895799495 -4.67465534666105 0.00132561925972209 0.0444604830797062 6.47884860280057 22.1054733512466 -0.389926895799495 0.0713972947870666 AT5G64920_at 6.89640170417764 7.04562749226635 7.48557892634496 7.01922511624326 7.79514285647413 7.47108623590097 6.87551878889543 6.4497748782597 7.31793594291425 7.6369725703237 8.32076693387777 8.20309889943056 7.69763248877907 7.84136822012 8.05569462890883 8.19222761744346 7.36392330078744 7.61690765683916 7.78101021091224 0.177886871219689 0.169683922599073 0.170105026357252 0.175003484412816 0.167451977863283 0.174947941161518 0.175307495907301 0.180721832435166 0.182051441083627 0.177235137350898 0.168027306643698 0.169662550904678 0.171113705912047 0.179763350748366 0.180670772776088 0.167451977863283 0.178315313999810 0.180364060044713 0.168350443948726 5 5 - 25961601 25962088 25961840.818 25961114 25962668 - gene protein_coding_gene TRUE TRUE AT5G64920.1 CIP8 (COP1-INTERACTING PROTEIN 8); protein binding / zinc ion binding Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. Identical to E3 ubiquitin-protein ligase CIP8 (EC 6.3.2.-) (COP1-interacting protein 8) (CIP8) [Arabidopsis Thaliana] (GB:Q9SPL2); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G13430.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89663.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.510629338615964 -4.67441266921014 0.00132605776576915 0.0444604830797062 6.47855530020587 14.8748405213153 -0.510629338615964 0.125512335489898 AT5G14460_at 7.97434172753395 7.89409740997689 8.25412272882128 8.33791309793717 8.67083809611464 8.3631743029623 8.02377502928727 8.15642955236933 7.88278844235514 7.85712682193305 8.3389481858467 8.70909197011865 8.39415381915683 8.4312703563628 8.43308772992942 8.95818761815652 8.52567851193315 8.47090837058134 7.97285588082342 0.141191433601379 0.144732047591895 0.151167531885463 0.143046434888207 0.141191433601379 0.151229837842409 0.151704947495712 0.146655716753979 0.174612962920283 0.147182495815183 0.157309998739746 0.143121250939267 0.141191433601379 0.141191433601379 0.150836590616967 0.148899984805874 0.162737819838481 0.163216565721025 0.143160696772775 5 5|0 -|/ 4660527 4661301 4661055.333 4660062 4662671 - gene protein_coding_gene TRUE TRUE AT5G14460.1 pseudouridylate synthase TruB family protein similar to NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) [Arabidopsis thaliana] (TAIR:AT3G57150.1); similar to putative tRNA synthase [Oryza sativa (japonica cultivar-group)] (GB:AAU44133.1); similar to Os05g0108000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054428.1); similar to putative tRNA synthase [Oryza sativa] (GB:AAK73131.1); contains InterPro domain tRNA pseudouridine synthase B; (InterPro:IPR004510); contains InterPro domain Pseudouridylate synthase TruB, N-terminal; (InterPro:IPR002501) -0.37137192389933 -4.66573790782096 0.00134183584948562 0.0446284469043984 6.46806396645085 16.4277979274410 -0.37137192389933 0.061358606910556 AT5G17400_at 4.26670460159349 4.06994138690022 4.9776504492397 4.99416085149356 6.05033924236317 5.43537894507689 5.1741872558763 5.12214638511726 5.39690099020224 5.62097822749214 6.16821292091295 5.79522698554156 5.77797537439459 5.90818871460526 5.68199633948982 6.56153096524559 5.63423558348137 5.63284061936489 5.81517362523685 0.208755447187012 0.201418854914409 0.198240834590015 0.194922159402305 0.19526897438354 0.193308008290322 0.192702420441789 0.196476537813963 0.206604455817555 0.197765252141463 0.197695144776257 0.194180455728172 0.193650873352114 0.193970996682543 0.196180626862162 0.192702420441789 0.196442634976699 0.199700389758705 0.204889476407203 5 5 - 5729043 5729628 5729317.727 5728793 5730378 - gene protein_coding_gene TRUE TRUE AT5G17400.1 ADP, ATP carrier protein, mitochondrial, putative / ADP/ATP translocase, putative / adenine nucleotide translocator, putative similar to AAC3 (ADP/ATP CARRIER 3), ATP:ADP antiporter/ binding [Arabidopsis thaliana] (TAIR:AT4G28390.1); similar to Adenine nucleotide translocator 1 [Medicago truncatula] (GB:ABE81429.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.476895434022753 -4.66540442173911 0.00134244643841945 0.0446284469043984 6.46766037657152 10.7643354158025 -0.476895434022753 0.112135252670514 AT5G65700_at 6.3033426552917 7.16247805886256 5.5655712402469 5.71072423787115 6.02415396535846 6.0637668749015 6.48125313650007 7.12876115770547 6.02992756190502 6.5430180941168 8.07096881239324 8.96116507478131 8.36750541753453 8.10983099610112 8.40269142287102 8.59477318338354 7.12698175869021 7.62417652915962 6.93605752696851 0.252625207863188 0.239347546683854 0.248642494298351 0.248858075962496 0.241456667045029 0.253702764438680 0.248528024187012 0.240889615511908 0.258057272748722 0.245250266986643 0.242880530733341 0.243704272264936 0.243176798480694 0.239347546683854 0.246155326127204 0.239347546683854 0.248938544398977 0.239347546683854 0.239387483288733 5 5 + 26301467 26302129 26301809.273 26298983 26302473 + gene protein_coding_gene TRUE TRUE AT5G65700.1 BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to CLV1 (CLAVATA 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G75820.1); similar to BAM3 (big apical meristem 3), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G20270.1); similar to receptor-like protein kinase 2 [Glycine max] (GB:AAF91323.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to receptor-like protein kinase 3 [Glycine max] (GB:AAF91324.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.677211101908009 -4.664504422129 0.00134409576891583 0.0446284469043984 6.46657108415016 13.6351377710228 -0.677211101908009 0.187986984443445 AT5G15950_at 7.54459707788586 7.78635214047649 9.32822476221724 9.06852449319403 8.57075150395356 8.1746455199858 10.5506176617996 10.2410711711665 9.38342751674374 9.47382266400885 9.55682766010622 9.87540813210718 10.4125237769904 10.1532558320083 9.67629369095916 10.8805495920816 10.8581418169069 10.4144437693546 9.49334629130936 0.180761751706193 0.155716361317505 0.137778738876174 0.143701859369740 0.136055148165901 0.1647812798361 0.134442030381873 0.134442030381873 0.147789680866142 0.142265218508887 0.147134165769572 0.134442030381873 0.135941758021016 0.143735622869052 0.136738367162621 0.137346505411490 0.145757473489525 0.134442030381873 0.135277724462396 5 5 + 5207201 5207723 5207450.909 5205872 5208039 + gene protein_coding_gene TRUE TRUE AT5G15950.1|AT5G15950.2 adenosylmethionine decarboxylase family protein|adenosylmethionine decarboxylase Identical to S-adenosylmethionine decarboxylase proenzyme 2 (EC 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain] (SAMDC2) [Arabidopsis Thaliana] (GB:Q9S7T9); similar to SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT3G02470.3); similar to S-adenosyl-L-methionine decarboxylase [Brassica juncea] (GB:AAR15894.1); similar to S-adenosylmethionine decarboxylase proenzyme 2 (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain] (GB:O49972); contains InterPro domain S-adenosylmethionine decarboxylase; (InterPro:IPR001985) -0.463219846952835 -4.66217621904438 0.00134837255966678 0.0446982401679678 6.46375252821876 18.7474127202523 -0.463219846952835 0.106482592043624 AT5G20080_at 8.54839243416945 8.53379530653595 9.10997375222855 8.94947567369328 8.66627066152034 8.23195104673709 8.71968147318341 8.6903537798054 8.4387921587666 8.24142232786131 8.82150174628964 9.0985853388774 8.86113426559572 9.00290925958226 9.22122588159941 8.91110656904928 8.75408745484267 9.10238978907607 8.05990980251853 0.0975684977190013 0.101166715875015 0.101870188440610 0.102713093892207 0.101972915124159 0.113197568074283 0.100951652565923 0.105717555458039 0.108180546495778 0.100363952394939 0.0975006408448766 0.100256968587706 0.0975006408448766 0.0998810836136144 0.0983077409946638 0.0975006408448766 0.108502016719489 0.104257261003052 0.106469254540670 5 0|5 /|+ 6784579 6786311 6785412.667 6782568 6786666 + gene protein_coding_gene TRUE TRUE AT5G20080.1 NADH-cytochrome b5 reductase, putative Identical to NADH-cytochrome b5 reductase-like protein (EC 1.6.2.2) (B5R) [Arabidopsis Thaliana] (GB:P83291;GB:Q8LBD3); similar to ATCBR (NADH:CYTOCHROME B5 REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT5G17770.1); similar to Flavoprotein pyridine nucleotide cytochrome reductase [Medicago truncatula] (GB:ABE86503.1); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain NADH:cytochrome b5 reductase (CBR); (InterPro:IPR001834); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) -0.401771922152907 -4.61152200664244 0.00144514969282603 0.0472961075141784 6.40218980625523 17.2903995832323 -0.401771922152907 0.0803291249561633 AT5G62440_at 5.84150590718666 5.58169764071786 6.54106827780696 6.13402371979242 6.08352078477617 5.85671701053643 6.51743119320896 5.87492660362266 4.21030428235149 4.55399236731853 5.25364835352497 5.46343273754540 5.3436711046633 5.05426136350045 5.22557260964463 5.24649205172628 5.35091878522813 4.93798940923755 4.949701468832 0.171918189290487 0.168967141723881 0.175394775892749 0.172617279138929 0.170276630224506 0.171854322370203 0.174407385501498 0.178125516398237 0.183700163449987 0.171440456572449 0.170735500618136 0.170014212899483 0.170775081356100 0.167461475287605 0.167990907781283 0.171202234803194 0.175111139661998 0.170063036767829 0.172503525588833 5 5 - 25089917 25091098 25090433.8 25089694 25091215 - gene protein_coding_gene TRUE TRUE AT5G62440.1 similar to defective chloroplasts and leaves protein-related / DCL protein-related [Arabidopsis thaliana] (TAIR:AT1G45230.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94367.1); similar to Os03g0187000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049206.1) -0.550013562313223 -4.59459929526435 0.00147912903575667 0.0481780160186636 6.38152056071422 10.9567768962316 -0.550013562313223 0.144522684499444 AT5G25130_at 3.8152074312733 3.40922917365044 5.85102268027686 5.63944438781234 5.69056614482954 5.35973780966135 5.73006824138486 5.7498555243506 5.9253934922169 5.95207694257873 6.3258265145526 5.16684384507939 5.97018931601931 6.6740522536959 5.19881015387085 6.21893194173196 6.21435313040181 6.24980057028705 5.69713737983775 0.220056485918191 0.21846640660615 0.167963032198841 0.163979874811923 0.163799887351437 0.165648626092714 0.172540237198943 0.166894881810818 0.165309248748586 0.166702325670322 0.163799887351437 0.164767005178040 0.163799887351437 0.165845447430576 0.169808032226865 0.165919593259573 0.170500868771304 0.167275553195856 0.169295050601935 5 5 + 8669567 8670059 8669780.909 8668302 8670197 + gene protein_coding_gene TRUE TRUE AT5G25130.1 CYP71B12 (cytochrome P450, family 71, subfamily B, polypeptide 12); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B12 (EC 1.14.-.-) (CYP71B12) [Arabidopsis Thaliana] (GB:Q9ZU07); similar to CYP71B14 (cytochrome P450, family 71, subfamily B, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G25180.1); similar to CYP71B11 (cytochrome P450, family 71, subfamily B, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G25120.1); similar to CYP71B13 (cytochrome P450, family 71, subfamily B, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G25140.1); similar to Cytochrome P450 71B1 (CYPLXXIB1) (GB:P49264); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.436163885001024 -4.58632742073136 0.00149605062795733 0.0485752214514952 6.3713987646391 11.0859182094462 -0.436163885001024 0.0978061486137203 AT5G04420_at 5.73361440924006 5.69797972746083 6.06183868742281 5.95560318246329 6.58589094925065 6.34470918729971 5.8829074391032 5.54534081775475 6.07340840980303 6.30825274183786 7.15825246012486 7.58836638207216 6.74331437797973 7.13894661968574 7.27727457542279 6.74542665611069 6.29321785763648 7.31190353616906 6.33951213358219 0.163779225900016 0.16032623120138 0.161894927520084 0.164743025505783 0.172511491701027 0.169873007937117 0.170524734490175 0.167256687557232 0.181323634767452 0.164001064915683 0.164305739346971 0.170616021770808 0.165813156007512 0.170740396445845 0.162079898230254 0.167305593387525 0.178292496235705 0.165489378076271 0.162358739027579 5 5|0 -|/ 1246887 1247678 1247301.111 1246605 1249944 - gene protein_coding_gene TRUE TRUE AT5G04420.1|AT5G04420.2|AT5G04420.3 kelch repeat-containing protein similar to ACBP4 (ACYL-COA BINDING PROTEIN 4, ACYL-COA-BINDING DOMAIN 4), acyl-CoA binding [Arabidopsis thaliana] (TAIR:AT3G05420.2); similar to Os02g0822800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048563.1); similar to putative transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAR88580.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.387680784320133 -4.58162524570147 0.00150576264973276 0.0487657558212784 6.3656395519969 12.6122250016117 -0.387680784320133 0.0743683524842229 AT5G19570_at 4.88678010405462 4.94146090554346 4.69161899452498 4.46594843792990 5.38370228535406 5.32385818199191 4.38791646057736 4.77009295216195 4.30719897805537 4.45697465887414 5.38312043016792 6.05338516336116 5.15355359343599 5.28149859717273 5.4159973892594 5.19745463557854 5.180085415929 4.82123517112456 4.72880116765438 0.250452962361294 0.247945962260563 0.261082516137920 0.257508302909354 0.245920823697083 0.253718951702934 0.25194087724987 0.249871311503946 0.256307758677802 0.249163410947795 0.250209935592425 0.250360869544969 0.251585447335682 0.250060517076064 0.253607040367109 0.245920823697083 0.245920823697083 0.252714371375866 0.246142971008393 5 5 + 6606759 6607130 6606909.273 6606702 6607205 + gene protein_coding_gene TRUE TRUE AT5G19570.1 similar to Os05g0188300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054840.1); similar to hypothetical protein DDB_0232155 [Dictyostelium discoideum AX4] (GB:XP_642584.1) -0.394201901841337 -4.57509900482757 0.00151935487440503 0.0490221099406831 6.35763969131268 9.76064707411642 -0.394201901841337 0.078077649689435 AT5G65810_at 6.94620939870096 6.94663045236596 6.53942876507708 6.4897214964105 7.57666405833153 7.2792426784578 7.83908865401649 7.11331402469748 7.27515407205757 7.28647104761829 8.82484647924265 8.8726671818339 8.23073501435667 8.48488605548356 8.79820264837223 8.12035683003769 7.89365836435208 8.42051262668203 7.33234871896775 0.178658435769204 0.172786317143034 0.18473272403789 0.186075426347251 0.172786317143034 0.185110963543190 0.180713946692104 0.175507425003432 0.183620128511089 0.189339353933203 0.176617038026571 0.185906943160054 0.186183883698221 0.192847677197097 0.181017052844082 0.177714174415091 0.179590611868743 0.187374399656603 0.183686003388205 5 5 - 26355074 26355770 26355492.455 26354895 26356965 - gene protein_coding_gene TRUE TRUE AT5G65810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49720.2); similar to Os01g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042001.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78370.1); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) -0.525232941246102 -4.56899326038756 0.00153219105338046 0.0493344989533308 6.35014839684695 14.9681496558037 -0.525232941246102 0.136008115907085 AT5G65050_at 4.99069109131787 4.83635472570022 4.96486800129081 5.40262269194196 5.64456921241816 5.42408463786365 4.76954635446366 5.10438163228567 4.89830778564741 4.80110001487711 5.44517745698355 5.44233616334404 5.37086736264879 5.16169649867076 5.4147617428043 5.62948938507844 5.32184736876545 5.10334561555034 4.74910722080308 0.138748504514169 0.148881513137194 0.151015705786192 0.138890315983993 0.148419535087664 0.146937685937967 0.139675653542495 0.14713329958716 0.148629595115403 0.142935717378344 0.138748504514169 0.144078246527690 0.143654053380007 0.142948795022990 0.140409941994121 0.142631052808203 0.138748504514169 0.138748504514169 0.147419995008898 5 0 / Inf -Inf NA 25999480 26003552 + gene protein_coding_gene TRUE FALSE AT5G65050.1|AT5G65050.2 AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31); transcription factor|AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31) Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. Identical to Agamous-like MADS-box protein AGL31 (Protein MADS AFFECTING FLOWERING 2) (AGL31) [Arabidopsis Thaliana] (GB:Q9FPN7;GB:Q84NB5;GB:Q9FGD9); similar to MAF3 (MADS AFFECTING FLOWERING 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65060.1); similar to 80C09_24 [Brassica rapa subsp. pekinensis] (GB:AAZ41835.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.452876822332906 -4.56594726508414 0.00153863831464316 0.0493344989533308 6.34640870182434 10.2308207299135 -0.452876822332906 0.106140083206729 AT5G65060_at 4.99069109131787 4.83635472570022 4.96486800129081 5.40262269194196 5.64456921241816 5.42408463786365 4.76954635446366 5.10438163228567 4.89830778564741 4.80110001487711 5.44517745698355 5.44233616334404 5.37086736264879 5.16169649867076 5.4147617428043 5.62948938507844 5.32184736876545 5.10334561555034 4.74910722080308 0.138748504514169 0.148881513137194 0.151015705786192 0.138890315983993 0.148419535087664 0.146937685937967 0.139675653542495 0.14713329958716 0.148629595115403 0.142935717378344 0.138748504514169 0.144078246527690 0.143654053380007 0.142948795022990 0.140409941994121 0.142631052808203 0.138748504514169 0.138748504514169 0.147419995008898 5 0 / Inf -Inf NA 26004655 26008541 + gene protein_coding_gene TRUE FALSE AT5G65060.1|AT5G65060.2 MAF3 (MADS AFFECTING FLOWERING 3); transcription factor MADS domain protein - flowering regulator that is closely related to FLC similar to MAF1 (MADS AFFECTING FLOWERING 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G77080.4); similar to 80C09_24 [Brassica rapa subsp. pekinensis] (GB:AAZ41835.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.452876822332906 -4.56594726508414 0.00153863831464316 0.0493344989533308 6.34640870182434 10.2308207299135 -0.452876822332906 0.106140083206729